EsuBft740_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft740_4a-0001
Unique NameEsuBft740_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_94contigScaffold_94:28494..31533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FZ07
ProteomeIdEsuBft740_4
Protein domainsIPR001876
Protein domainsSSF90209
Protein domainsPTHR12999
Ownerapollo_admin@sb-roscoff.fr
Notezinc finger ran-binding domain-containing protein 2 os:gallus gallus gn:zranb2 pe:2 sv:1 [Automatic annotation]
Nb exon5
Max annot lvl2759|Eukaryota
Length1512
Hectar predicted targeting categoryother localisation
Evalue1.29e-132
EggNOG OGsKOG1995@1|root,KOG1995@2759|Eukaryota
Ec32 ortholog descriptionZinc finger, RanBP2-type
Ec32 orthologEc-06_002040.1
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K13098,ko:K14651
KEGG Pathwayko03022,ko05202,map03022,map05202
GOsGO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006366,GO:0006367,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010646,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0023051,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1901796,GO:1902531,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
DescriptionRNA binding
COG categoryJ
BRITEko00000,ko00001,ko03019,ko03021,ko03041
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
GO0005730
GO0005622
GO0008270
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft740_4aEsuBft740_4aEctocarpus subulatus male Bft15bgeneScaffold_94 28494..31533 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft740_4a-0001EsuBft740_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_94 28920..31362 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft740_4a-0001-exonEsuBft740_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_94 28494..28998 -
EsuBft740_4a-0001-exonagat-exon-32001Ectocarpus subulatus male Bft15bexonScaffold_94 29296..29376 -
EsuBft740_4a-0001-exonagat-exon-32000Ectocarpus subulatus male Bft15bexonScaffold_94 29823..30088 -
EsuBft740_4a-0001-exonagat-exon-31999Ectocarpus subulatus male Bft15bexonScaffold_94 30276..30413 -
EsuBft740_4a-0001-exonagat-exon-32002Ectocarpus subulatus male Bft15bexonScaffold_94 31012..31533 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft740_4a-0001-exonagat-three_prime_utr-20928Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_94 28494..28919 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft740_4a-0001-cdsEsuBft740_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_94 28920..28998 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft740_4a-0001-exonagat-five_prime_utr-13452Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_94 31363..31533 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft740_4a-0001 ID=EsuBft740_4a-0001|Name=EsuBft740_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1512bp|location=Sequence derived from alignment at Scaffold_94:28494..31533- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCAAGTAAGCACAGCTCCTGTTGCTTGTGTACTAAACTTTGCTTGGTGAC
CACTGCGTATTGACGCGCTGTGTAATCGGCCTGCTGCAGCCGTGGTCTCC
ATCGCCCGGTGCGGGATCGACTGGCATCATTTTTAGCGTTCTATACACAG
CAGCAGTAGCGAGCGAGGGAGATGTCTGAGGGCGAAGCGTACGATCCGGC
CGCTGCGGCTGTCCCAGCCGGAGGCAGGGGCGATGGGGGTGGAAGAGGAA
GGGGGAGGGGGCGAGGACGGGGTGGCGGAGGCGTCGCCATCGCAGGGATC
GCGGAGCTTGATGCCAGCATGGGCCGGGGAGCGCCTGTTCCTCCCGCTGG
CGGAGGTGGCAAGCCTCTCCCCAAGAAGGAGCAGAAGGACTTCAGAGGAC
CGGCGGGGCTGTTCAAGAAGGGCGACTGGACGTGCACCGCGTGCGGCAAC
GTCAACTGGGAGCGCCGGGCGACCTGCAACAAGTGTAACAACCCGAAGCC
TAACCTTGCAGCCACGGATGAGGCTCGAGAGGGGCTCGGCGGTGGCTTCA
ACGAGCGCCAGGACCGGGCGTCTGTTGCGACGGTGGAGGTCGACGAGGAT
GGCTTCGACGACTTCGGCCGGAAGAAGATCAAGGCTCGCGTCGACAAGAA
GGCCAAGGAGGATGCAGCTCTGGCACGCCTCCACAAGTCGTTCGGAGGTG
GGATCCTGGGCGGGACCAGCCTGGCCCCCGTCGGCAAACCTCCGGTGCCG
GGGCAGTTCGACGATGCGTTGCCCGCCCCATCCGTGACCACGTATGATAA
GTTCGGACGCCCCAGGCTTGCGGGCGGCGGGCGCAACGGCGGCGGCGGCG
GCGACAATGGGGTTTCGACGGCGGCGACGACGAGTGGAGGAGACAGGGAC
GGGCGAGGGGGAGACCATAGAGACGGGGACAGACGGGACAGCCGAGACAA
GGACAGACGAAGGGGAGCGAGAAGCAGGAGCAGGAGCAGGAGCAGGAGCC
GAGAGAGGAGCAGCAGAGACGACAAGGATAGGTCGAGACGGAGGCGGAGT
CGCTCAAGGAGCCGCGACCGTGACCGTCGTCGCTGACCAATCAAAGGCCA
GACACACATCGCCATACATAATTCATGGTGGTCACACTGTCGCGTTTCTA
CTGGAGCCGGCCGGCTATCAGGGCTGGTGGACTGATTAGTGGCAATCACA
GCAACGATATTGGGCTGCTGTCAGTATCCCGCAGATTGGCATGGCGGATT
CGGCATGCACACCGGCAGATTGCTTGTGTTGAACCCACCGTCAGATTCAT
GTGTCGGCACTGAGCGGGCGCGTCGATACGGTGCAGGGCACCGTACTACG
CATCCCCATGGCTGGAATTTTGCGCGCAGTGTATGAACAGCGGCGGAAGA
TGCGCTAGGTTCTTTTGCGAGGGGCAATTTTTCGCGGTTGGCGGGATGGA
GGATGGAGGCGTTTTCGGTTTTGGCAAGAGCGAACAAAGATCGTGCGAGG
AGAACATGGATC
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protein sequence of EsuBft740_4a-0001

>EsuBft740_4 ID=EsuBft740_4|Name=EsuBft740_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=304bp
MSEGEAYDPAAAAVPAGGRGDGGGRGRGRGRGRGGGGVAIAGIAELDASM
GRGAPVPPAGGGGKPLPKKEQKDFRGPAGLFKKGDWTCTACGNVNWERRA
TCNKCNNPKPNLAATDEAREGLGGGFNERQDRASVATVEVDEDGFDDFGR
KKIKARVDKKAKEDAALARLHKSFGGGILGGTSLAPVGKPPVPGQFDDAL
PAPSVTTYDKFGRPRLAGGGRNGGGGGDNGVSTAATTSGGDRDGRGGDHR
DGDRRDSRDKDRRRGARSRSRSRSRSRERSSRDDKDRSRRRRSRSRSRDR
DRRR
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mRNA from alignment at Scaffold_94:28494..31533-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft740_4a-0001 ID=EsuBft740_4a-0001|Name=EsuBft740_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3040bp|location=Sequence derived from alignment at Scaffold_94:28494..31533- (Ectocarpus subulatus male Bft15b)
CCAAGTAAGCACAGCTCCTGTTGCTTGTGTACTAAACTTTGCTTGGTGAC
CACTGCGTATTGACGCGCTGTGTAATCGGCCTGCTGCAGCCGTGGTCTCC
ATCGCCCGGTGCGGGATCGACTGGCATCATTTTTAGCGTTCTATACACAG
CAGCAGTAGCGAGCGAGGGAGATGTCTGAGGGCGAAGCGTACGATCCGGC
CGCTGCGGCTGTCCCAGCCGGAGGCAGGGGCGATGGGGGTGGAAGAGGAA
GGGGGAGGGGGCGAGGACGGGGTGGCGGAGGCGTCGCCATCGCAGGGATC
GCGGAGCTTGATGCCAGCATGGGCCGGGGAGCGCCTGTTCCTCCCGCTGG
CGGAGGTGGCAAGCCTCTCCCCAAGAAGGAGCAGAAGGACTTCAGAGGAC
CGGCGGGGCTGTTCAAGAAGGGCGACTGGACGTGCACCGCGTGCGGCAAC
GTCAACTGGGAGCGCCGGGCGACCTGCAACAAGTGTAACAACCCGAAGCC
TAACCTTGCAGCCACGGATGAGGTGAGTTTCGGTGTTACCTGCTGTTGGC
TTTCCCAACTACTGCTGACCGGTACCCTCGTTTCATGGTACGTTGGTAGC
ACACGGCAGGAGCGGTGCTGATGGTGTTGAGAGTCCACCACAAGCTGGTT
TTAACAGCAGCGGTAGACTACACATAGATGTATTGCTCCCGCAGACTGTG
TGGCAATACCATTTAGCGCCCTTTGACTGTCGTTCGTTTTGTCAATGAAT
CACCGCCATATCCTCTCTCTCTGATGTACCGATGTACGGCCTACCTCTAC
GGATTCACGTTTGGCACATATCTTTGCTGCCAAAGATTTCCACCACCTTT
CGACAGCAATACATGCTGCAGGTCACGATGGAACTCGGCCGCCCACAATA
TTCGCTGCATCATGCCACTTGCTCTATGGTGACCGACCCCCTCTTGACCC
ATCCATGTTCCCGATAAGATAACGCTACAGTAGCAGCACCTTCATGTTCA
TCTTTCCCTTCTCCCCGGGATTTCAAGCCCCTAAACCAGTCCCCCCTGGG
TCGGTTCCTACTCGAACGCGATTGGTTGCTTCGATCATCCCGCATGCTTC
CGCTTCACAACGCTTGGCAGGCTCGAGAGGGGCTCGGCGGTGGCTTCAAC
GAGCGCCAGGACCGGGCGTCTGTTGCGACGGTGGAGGTCGACGAGGATGG
CTTCGACGACTTCGGCCGGAAGAAGATCAAGGCTCGCGTCGACAAGAAGG
CCAAGGAGGTGAGTCCGTACATCCGCATCCGGGCCGGCAGCAGTCCCCTG
ATGGTTCCCAAAGAAACACGGCGACCGCGCTGCTCTCCCGCCTGTGGCGG
CGGTCTGTCGCCAGGAGGCGGAAAAAAAATGGGCACGTGATACCAAACCC
ATTTGTTGGCCTTAGCACGCCCGCCCTATCATCATGCCGTAACAGGATGC
AGCTCTGGCACGCCTCCACAAGTCGTTCGGAGGTGGGATCCTGGGCGGGA
CCAGCCTGGCCCCCGTCGGCAAACCTCCGGTGCCGGGGCAGTTCGACGAT
GCGTTGCCCGCCCCATCCGTGACCACGTATGATAAGTTCGGACGCCCCAG
GCTTGCGGGCGGCGGGCGCAACGGCGGCGGCGGCGGCGACAATGGGGTTT
CGACGGCGGCGACGACGAGTGGAGGAGACAGGGACGGGCGAGGGGGAGAC
CATAGAGACGGGTGGGTGCGGGGAACTCTGTGGCTATCGTGCTCACGCGA
AGCGTGCGTGCGTGTATTTGTTGTGTGGGCATGCAATGGGGACTTGTGGC
TGCATGGTTTTGTTCGGGGCTAGAGTTCCAGCCATCATTTTGGTTGCTTG
CAGGCTTGCGCACCGAACGGTTTTGTTTCCGGTGCGCCTTTCGCGACAGC
AGCTTAGATGCTCGTATTGAGGCGTTGTGCCCATCCCCGCCGTGGCGTCA
TGCAGCGTCGTCGGTCAGCTTGCGACCAACCTTGGATACTTCATTTGACG
CGGTGTGGGTTTGCTCGTGTGATTGTGGCGTTCGCACGACGCCCTGCGGA
AGTTGCGGGTGGCAAAACCGTTCGTGGTTCAACATTTTCGGCCGGAACTT
TTCTGATTATGCTGTGAACCGTTCTATTCTTGCCGTTCTTTTGCATCACG
GGGACAGGGACAGACGGGACAGCCGAGACAAGGACAGACGAAGGGGAGCG
AGAAGCAGGAGCAGGAGCAGGAGCAGGAGCCGAGAGAGGTGAGACACTAG
CCCACGTTGTAGCCCCAGGCGATGGCTTGCTCTCGGTCTTGAGACTGTCA
CGGAATGCCAAAGTTCGCTGCTTACGTATGTGCGACTATTCGCGCAGAAT
TGTGTGTATCGTGTCTGTTCGTGTGGTGGCATTCGTCTATAGACTAGGCC
GGCGAAAACCCGGCACATCCCTCCGTCCCGGTAGTGTAGGGATGCGAGGT
CAATGGTCTAGCGACATCAGCATGCGTTAACACGTGTACCCCCCCCCTCC
CCCCCTCCCCTCGCATCACCAACATCCGCTGACAGGAGCAGCAGAGACGA
CAAGGATAGGTCGAGACGGAGGCGGAGTCGCTCAAGGAGCCGCGACCGTG
ACCGTCGTCGCTGACCAATCAAAGGCCAGACACACATCGCCATACATAAT
TCATGGTGGTCACACTGTCGCGTTTCTACTGGAGCCGGCCGGCTATCAGG
GCTGGTGGACTGATTAGTGGCAATCACAGCAACGATATTGGGCTGCTGTC
AGTATCCCGCAGATTGGCATGGCGGATTCGGCATGCACACCGGCAGATTG
CTTGTGTTGAACCCACCGTCAGATTCATGTGTCGGCACTGAGCGGGCGCG
TCGATACGGTGCAGGGCACCGTACTACGCATCCCCATGGCTGGAATTTTG
CGCGCAGTGTATGAACAGCGGCGGAAGATGCGCTAGGTTCTTTTGCGAGG
GGCAATTTTTCGCGGTTGGCGGGATGGAGGATGGAGGCGTTTTCGGTTTT
GGCAAGAGCGAACAAAGATCGTGCGAGGAGAACATGGATC
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Coding sequence (CDS) from alignment at Scaffold_94:28494..31533-

>EsuBft740_4a-0001 ID=EsuBft740_4a-0001|Name=EsuBft740_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=915bp|location=Sequence derived from alignment at Scaffold_94:28494..31533- (Ectocarpus subulatus male Bft15b)
ATGTCTGAGGGCGAAGCGTACGATCCGGCCGCTGCGGCTGTCCCAGCCGG
AGGCAGGGGCGATGGGGGTGGAAGAGGAAGGGGGAGGGGGCGAGGACGGG
GTGGCGGAGGCGTCGCCATCGCAGGGATCGCGGAGCTTGATGCCAGCATG
GGCCGGGGAGCGCCTGTTCCTCCCGCTGGCGGAGGTGGCAAGCCTCTCCC
CAAGAAGGAGCAGAAGGACTTCAGAGGACCGGCGGGGCTGTTCAAGAAGG
GCGACTGGACGTGCACCGCGTGCGGCAACGTCAACTGGGAGCGCCGGGCG
ACCTGCAACAAGTGTAACAACCCGAAGCCTAACCTTGCAGCCACGGATGA
GGCTCGAGAGGGGCTCGGCGGTGGCTTCAACGAGCGCCAGGACCGGGCGT
CTGTTGCGACGGTGGAGGTCGACGAGGATGGCTTCGACGACTTCGGCCGG
AAGAAGATCAAGGCTCGCGTCGACAAGAAGGCCAAGGAGGATGCAGCTCT
GGCACGCCTCCACAAGTCGTTCGGAGGTGGGATCCTGGGCGGGACCAGCC
TGGCCCCCGTCGGCAAACCTCCGGTGCCGGGGCAGTTCGACGATGCGTTG
CCCGCCCCATCCGTGACCACGTATGATAAGTTCGGACGCCCCAGGCTTGC
GGGCGGCGGGCGCAACGGCGGCGGCGGCGGCGACAATGGGGTTTCGACGG
CGGCGACGACGAGTGGAGGAGACAGGGACGGGCGAGGGGGAGACCATAGA
GACGGGGACAGACGGGACAGCCGAGACAAGGACAGACGAAGGGGAGCGAG
AAGCAGGAGCAGGAGCAGGAGCAGGAGCCGAGAGAGGAGCAGCAGAGACG
ACAAGGATAGGTCGAGACGGAGGCGGAGTCGCTCAAGGAGCCGCGACCGT
GACCGTCGTCGCTGA
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