EsuBft740_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft740_3a-0001
Unique Name	EsuBft740_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_94	contig	Scaffold_94:24379..28000 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft740_3
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	292
Hectar predicted targeting category	other localisation
Ec32 ortholog description	hypothetical protein
Ec32 ortholog	Ec-06_002050.1
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft740_3a	EsuBft740_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_94 24379..28000 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft740_3a-0001	EsuBft740_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_94 25192..26748 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft740_3a-0001-exon	EsuBft740_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_94 24379..24437 +
EsuBft740_3a-0001-exon	agat-exon-31998	Ectocarpus subulatus male Bft15b	exon	Scaffold_94 25133..28000 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft740_3a-0001-exon	agat-five_prime_utr-13450	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_94 24379..24437 +
EsuBft740_3a-0001-exon	agat-five_prime_utr-13451	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_94 25133..25191 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft740_3a-0001-cds	EsuBft740_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_94 25192..26748 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft740_3a-0001-exon	agat-three_prime_utr-20927	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_94 26749..28000 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_94:24379..28000+
coding sequence from alignment at Scaffold_94:24379..28000+

spliced messenger RNA

>EsuBft740_3a-0001 ID=EsuBft740_3a-0001|Name=EsuBft740_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2927bp|location=Sequence derived from alignment at Scaffold_94:24379..28000+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCCCCGCAACAAGCAATCACAACCCAGCGGCATTGGTTGGATGCACACG
AGAACATCGGTACACCCCCCCAGGTATTCCCCAAACAGCCAGACGTATCT
CCAGCAAGCTCTTTCAGCATGCCCACTACTCCGGCGGGTGGCAAGGAGAA
CATTGGCAGCGGCGACCCAGACGCCAACATTACCAAGGCCCCAAAGCCTG
CTCGCCGTGGCGTAGGCCCGCGGAGTGGGACGAAAAACGCCTCTCCCCGG
GTTTCTATCGCCGGCTCTTCTGTTGGGCTAGTCGCTGCAAAGAAGTCGTC
CGCGGTGTCTCCCGCGCCATCGAAGACGCGGCCGGCGGCGGCTAGGCCAT
CGAGCAGCAGCAGCAGCAGGAGCAGGAGCACGGCCATTGCCGCCACAGGC
CCTCGTGCTCTCGCCGCCAAGGCCTCCTCTTCGGGCCGAGGGGTAACGGC
AGCAGCGTCGGCTCGGCAAGGCTCTGCTGCGGGCAAGCCCCAGATGCAGC
AGAAGCAGAAGCGGTTGCGGCCGGCGGTGCTGGTGTCCTCGCCGGCGCCG
CCTCGTGTAGCATGCGATGTGAGCGGCAGCAGCGGCGGAAGCGGTAGCGG
CGGCGGCGGCGGAAAGAAGAGGAAGAGCGCCGTTGTCGGGGGTGAGGGGT
GCGGGAAGAAGCAGCAGCAGCAGCGGGGGTCGATGGGCAGGAAGAGGCTC
CAGCCCAACAAGGAAAAAAACAGGCAGACCAAGGTCATCAGTCACCCGGC
GGCGAGGTCAAGCGCCCCGCCTCTCCGCTTACCCTCTCGAGGCCGATCGG
ATTTCGATTTCGATTCCGACGACTCAGCGGCGGACGACGAAAACCGTGCG
TGGAATGCCGTACCCGCAGCGGTGGAGCCGGCGAGCAGGAAGAAGGCACG
GGGCGGGGGTGCTGCCGGGAACAAGGTGAAGCGAATGCGTGCATCGTCGG
GCGGCAGGCGAGAGGCGGCGGACGGTAGCAGAGCGCGACCCCTGGAGGGG
TTTGCGGCAACGAGTCCGGCCCCTGGCACCCGCGGTGCAGGCACGAAAGC
GACGACGACCGCAGCTAGTCCTTCCTCTTCTCCGAAGCAGACGGCTCACC
ACAGCAGTACTTCAACGGCAAGGAGCGGTGGTGGCAGCAGCGAGGCTAGT
GCATCATTCTCTCCGCGGGGACCGTGGCGCCTCGGCGCTCTGTTCGCAGA
CTCAGACGACGACGACTCCGAGGGAGACGGGGAGGGGGGCGGGGGTCTCG
CAGGGTGCAACTGGAGGCTGTCTGATGACGAGAACGAAGGCGACGACGAG
ATCGACCTGCACAAGAGGAGGAGCCCACGGCGGTTTGCTGCCAGGAAAGA
GGGTCCCGTGTCTGCCAGGAAAAAAATGCGCAGGGCGAGCGGCGGCGGCG
GCGGCGGTAGGGGAAGCGATGGATGCAATTCCGCTGGCGGTAGTGGCGGC
CGGGGGGGAGGTAGTGGAGCCATGGTGGAGAAGGCTGGTGGTGGTGCCGA
CGGTAGTCTCTCGCCGTCCGTCCCCGTCGTCGATGGTACAGCTGCTGGCG
GTAGCCCAGGCAAGGCTTCGACGAGCCAGCAGGGCATCGAGGAGCAGGCG
GAGCATGCCGAGCTGGAAGCGATTCGAGCGCAGTTCAGGAAGGTGGACTC
CCACCGTCTGAGCCTGTCGCGCTAGACAGTGTCGTGTGATGTGCCGGCCG
CGCGGCGGACGGGACCCCCCGGTATAGGCAACGCGCTCTTGCATGTGGCA
TACGGCGGTATTGCGAGTACCGGTGGTGCGGCGGGACTGTTGAGAATGTC
CGGAGATAGATAGATATTGTGGTTCCAGGGAGGTAGGCGTGCGGCACCCC
CTTGTTGTCTTTGAAGTGATGCATGCTACGCTGGCGCGGAGCGACCCTGA
GGGCTGCGAAGAAAGGGCGATGGGGGTTGGTCATGCAGCGGATCAATGTG
CAGCTATTTCAAATGAGGTGTTTCACTGTTGTAAGTAAGGGTTTCCTCGG
TATTTACGAGGAGTTACGTTTGAATGTTCCGCAGGGGCCTCGGAGAGAGA
GAGCGTTTTGACTCAAAAATGTTTGGATGTGTGACCGTCGCTCGTCCTTA
TGGGTGTTAAAACGAGAGGAACGGCAGTACGAGCCAGTGTAGAATATCGG
CGATGGTGGTCTTACCTTGTGTAGTTGCAGATGGTATGTGTTGTGTACAC
TAGTATGTTGTCGGCATCTAGCCCTCGCAAAAGTCAGGCTTTGCGTCCCT
CGTGAGCGGGACGCGCTGCTTCCGGCTGTGGCTTTGAGACGCCGTGGAGG
CGACACGAGACCCGGTCAAGGCGTGCTGGGTACTTTGTCAGCGTGGACGT
TGAGAGGGTTGGAGTCGGAGAACAGCAAGAGCGATTTTCTTGGCAGCATT
GGAAGTTGGCTAGGAAAGAAATATATATGTTCTACAAGACTCGCGTGCGC
ACTCCCGGTGCAGTCAAGGTATCTTAGTGAGGGGTGTTGTAGCGCTTCGT
TGTGGGGAGAAAGGGGTTCGAAGAAGCTCATCACGGACGCGTCACGTAGT
GTTGTTTCTCGGTATTCAAAGGGCTGTGTTGTGTGCATCAAACAGGTTCA
GAAGGCCACAAGAGCTCGGAGCACGGGCCGCCCTTGCCTGTGTGGTTGTG
CCCTCTCGGTGCCACTGCATTTCCACGTAATAGTAGATGCACCGCGTGCC
TTTGTAGCTTTTCGGGTCCAACCCAAAATATTGTCTTGTGCTCACTCGCA
GCACTCTTTCGATGAACAGTAAACATCGCATACCGGACGTACAAGCTGTA
GAGTCTGTGTCTTCGGTAGGACATCCGTTTCGTGCACGAGGGGCTGAACG
TCTTTGCAGAATCAATCTTCCACCTTGCGAGTAGTTTTCGGAGACGAAGA
AGTGGCTGTATTTTTTTTTTTGCGAAT

protein sequence of EsuBft740_3a-0001

>EsuBft740_3 ID=EsuBft740_3|Name=EsuBft740_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=518bp
MPTTPAGGKENIGSGDPDANITKAPKPARRGVGPRSGTKNASPRVSIAGS
SVGLVAAKKSSAVSPAPSKTRPAAARPSSSSSSRSRSTAIAATGPRALAA
KASSSGRGVTAAASARQGSAAGKPQMQQKQKRLRPAVLVSSPAPPRVACD
VSGSSGGSGSGGGGGKKRKSAVVGGEGCGKKQQQQRGSMGRKRLQPNKEK
NRQTKVISHPAARSSAPPLRLPSRGRSDFDFDSDDSAADDENRAWNAVPA
AVEPASRKKARGGGAAGNKVKRMRASSGGRREAADGSRARPLEGFAATSP
APGTRGAGTKATTTAASPSSSPKQTAHHSSTSTARSGGGSSEASASFSPR
GPWRLGALFADSDDDDSEGDGEGGGGLAGCNWRLSDDENEGDDEIDLHKR
RSPRRFAARKEGPVSARKKMRRASGGGGGGRGSDGCNSAGGSGGRGGGSG
AMVEKAGGGADGSLSPSVPVVDGTAAGGSPGKASTSQQGIEEQAEHAELE
AIRAQFRKVDSHRLSLSR

mRNA from alignment at Scaffold_94:24379..28000+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft740_3a-0001 ID=EsuBft740_3a-0001|Name=EsuBft740_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3622bp|location=Sequence derived from alignment at Scaffold_94:24379..28000+ (Ectocarpus subulatus male Bft15b)
CCCCCCGCAACAAGCAATCACAACCCAGCGGCATTGGTTGGATGCACACG
AGAACATCGGTGAGAGAAGAAAGAGTTGGTTTTGGTTATGCTGGTCCGTT
TGCTCCTAGCCATAACATCGCAAGCGAGATATATTGCAAAGGCGCGCAAC
CGGCATCGTTTTCACTCCAAAATAGCCGAATTCGCGCCGGGCGCTGGGCG
TAAGCCGCACGCATGATATTGCTACTTGCCGTTGGCCGCGCTGCTGTTGA
TTGTTCATACCACTGCTTCTTGTTTGACCTGTTACCTGTGGTTCGATGCT
ACGTCTCGTGGCACGTGTCGGGCTGTGCTAAACCTTCTCGGTGCATCTGT
CGTATTTCCGACCTAAAGCGTGGGGTTTCGCCTGTGTAACTGCAACCGTG
TAAATTATACCTTTGTGACCGCTGTGACGGTGCGAGTCTATAGGTAGAAC
GTTGTAGCACGCCTGGGGTTCACGACGAGGGAGGGCCGGGAGCATGATCG
CCATCGGGTGTTTCAAATGAGCTTGATGTGAACGGAATCACCGAGGGTTG
TATTGCCTTCCATCCTACCAGCTCCTGTTGATGCTTTCATATTTCGAATC
TGTCTAGTCTACCGCTGTACATACCTATGCTCAGCAGCGGTTGACGTGTA
TCGACCGTGGCGCGACGCTGTGTGTACGCTCATGATACGCAGCAGCACTC
ACATTTTGTCGGCGTCGTCATTCTCTCCGCGCGCTTTTCGCCTGCCCCCC
CTAGGTACACCCCCCCAGGTATTCCCCAAACAGCCAGACGTATCTCCAGC
AAGCTCTTTCAGCATGCCCACTACTCCGGCGGGTGGCAAGGAGAACATTG
GCAGCGGCGACCCAGACGCCAACATTACCAAGGCCCCAAAGCCTGCTCGC
CGTGGCGTAGGCCCGCGGAGTGGGACGAAAAACGCCTCTCCCCGGGTTTC
TATCGCCGGCTCTTCTGTTGGGCTAGTCGCTGCAAAGAAGTCGTCCGCGG
TGTCTCCCGCGCCATCGAAGACGCGGCCGGCGGCGGCTAGGCCATCGAGC
AGCAGCAGCAGCAGGAGCAGGAGCACGGCCATTGCCGCCACAGGCCCTCG
TGCTCTCGCCGCCAAGGCCTCCTCTTCGGGCCGAGGGGTAACGGCAGCAG
CGTCGGCTCGGCAAGGCTCTGCTGCGGGCAAGCCCCAGATGCAGCAGAAG
CAGAAGCGGTTGCGGCCGGCGGTGCTGGTGTCCTCGCCGGCGCCGCCTCG
TGTAGCATGCGATGTGAGCGGCAGCAGCGGCGGAAGCGGTAGCGGCGGCG
GCGGCGGAAAGAAGAGGAAGAGCGCCGTTGTCGGGGGTGAGGGGTGCGGG
AAGAAGCAGCAGCAGCAGCGGGGGTCGATGGGCAGGAAGAGGCTCCAGCC
CAACAAGGAAAAAAACAGGCAGACCAAGGTCATCAGTCACCCGGCGGCGA
GGTCAAGCGCCCCGCCTCTCCGCTTACCCTCTCGAGGCCGATCGGATTTC
GATTTCGATTCCGACGACTCAGCGGCGGACGACGAAAACCGTGCGTGGAA
TGCCGTACCCGCAGCGGTGGAGCCGGCGAGCAGGAAGAAGGCACGGGGCG
GGGGTGCTGCCGGGAACAAGGTGAAGCGAATGCGTGCATCGTCGGGCGGC
AGGCGAGAGGCGGCGGACGGTAGCAGAGCGCGACCCCTGGAGGGGTTTGC
GGCAACGAGTCCGGCCCCTGGCACCCGCGGTGCAGGCACGAAAGCGACGA
CGACCGCAGCTAGTCCTTCCTCTTCTCCGAAGCAGACGGCTCACCACAGC
AGTACTTCAACGGCAAGGAGCGGTGGTGGCAGCAGCGAGGCTAGTGCATC
ATTCTCTCCGCGGGGACCGTGGCGCCTCGGCGCTCTGTTCGCAGACTCAG
ACGACGACGACTCCGAGGGAGACGGGGAGGGGGGCGGGGGTCTCGCAGGG
TGCAACTGGAGGCTGTCTGATGACGAGAACGAAGGCGACGACGAGATCGA
CCTGCACAAGAGGAGGAGCCCACGGCGGTTTGCTGCCAGGAAAGAGGGTC
CCGTGTCTGCCAGGAAAAAAATGCGCAGGGCGAGCGGCGGCGGCGGCGGC
GGTAGGGGAAGCGATGGATGCAATTCCGCTGGCGGTAGTGGCGGCCGGGG
GGGAGGTAGTGGAGCCATGGTGGAGAAGGCTGGTGGTGGTGCCGACGGTA
GTCTCTCGCCGTCCGTCCCCGTCGTCGATGGTACAGCTGCTGGCGGTAGC
CCAGGCAAGGCTTCGACGAGCCAGCAGGGCATCGAGGAGCAGGCGGAGCA
TGCCGAGCTGGAAGCGATTCGAGCGCAGTTCAGGAAGGTGGACTCCCACC
GTCTGAGCCTGTCGCGCTAGACAGTGTCGTGTGATGTGCCGGCCGCGCGG
CGGACGGGACCCCCCGGTATAGGCAACGCGCTCTTGCATGTGGCATACGG
CGGTATTGCGAGTACCGGTGGTGCGGCGGGACTGTTGAGAATGTCCGGAG
ATAGATAGATATTGTGGTTCCAGGGAGGTAGGCGTGCGGCACCCCCTTGT
TGTCTTTGAAGTGATGCATGCTACGCTGGCGCGGAGCGACCCTGAGGGCT
GCGAAGAAAGGGCGATGGGGGTTGGTCATGCAGCGGATCAATGTGCAGCT
ATTTCAAATGAGGTGTTTCACTGTTGTAAGTAAGGGTTTCCTCGGTATTT
ACGAGGAGTTACGTTTGAATGTTCCGCAGGGGCCTCGGAGAGAGAGAGCG
TTTTGACTCAAAAATGTTTGGATGTGTGACCGTCGCTCGTCCTTATGGGT
GTTAAAACGAGAGGAACGGCAGTACGAGCCAGTGTAGAATATCGGCGATG
GTGGTCTTACCTTGTGTAGTTGCAGATGGTATGTGTTGTGTACACTAGTA
TGTTGTCGGCATCTAGCCCTCGCAAAAGTCAGGCTTTGCGTCCCTCGTGA
GCGGGACGCGCTGCTTCCGGCTGTGGCTTTGAGACGCCGTGGAGGCGACA
CGAGACCCGGTCAAGGCGTGCTGGGTACTTTGTCAGCGTGGACGTTGAGA
GGGTTGGAGTCGGAGAACAGCAAGAGCGATTTTCTTGGCAGCATTGGAAG
TTGGCTAGGAAAGAAATATATATGTTCTACAAGACTCGCGTGCGCACTCC
CGGTGCAGTCAAGGTATCTTAGTGAGGGGTGTTGTAGCGCTTCGTTGTGG
GGAGAAAGGGGTTCGAAGAAGCTCATCACGGACGCGTCACGTAGTGTTGT
TTCTCGGTATTCAAAGGGCTGTGTTGTGTGCATCAAACAGGTTCAGAAGG
CCACAAGAGCTCGGAGCACGGGCCGCCCTTGCCTGTGTGGTTGTGCCCTC
TCGGTGCCACTGCATTTCCACGTAATAGTAGATGCACCGCGTGCCTTTGT
AGCTTTTCGGGTCCAACCCAAAATATTGTCTTGTGCTCACTCGCAGCACT
CTTTCGATGAACAGTAAACATCGCATACCGGACGTACAAGCTGTAGAGTC
TGTGTCTTCGGTAGGACATCCGTTTCGTGCACGAGGGGCTGAACGTCTTT
GCAGAATCAATCTTCCACCTTGCGAGTAGTTTTCGGAGACGAAGAAGTGG
CTGTATTTTTTTTTTTGCGAAT

Coding sequence (CDS) from alignment at Scaffold_94:24379..28000+

>EsuBft740_3a-0001 ID=EsuBft740_3a-0001|Name=EsuBft740_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1557bp|location=Sequence derived from alignment at Scaffold_94:24379..28000+ (Ectocarpus subulatus male Bft15b)
ATGCCCACTACTCCGGCGGGTGGCAAGGAGAACATTGGCAGCGGCGACCC
AGACGCCAACATTACCAAGGCCCCAAAGCCTGCTCGCCGTGGCGTAGGCC
CGCGGAGTGGGACGAAAAACGCCTCTCCCCGGGTTTCTATCGCCGGCTCT
TCTGTTGGGCTAGTCGCTGCAAAGAAGTCGTCCGCGGTGTCTCCCGCGCC
ATCGAAGACGCGGCCGGCGGCGGCTAGGCCATCGAGCAGCAGCAGCAGCA
GGAGCAGGAGCACGGCCATTGCCGCCACAGGCCCTCGTGCTCTCGCCGCC
AAGGCCTCCTCTTCGGGCCGAGGGGTAACGGCAGCAGCGTCGGCTCGGCA
AGGCTCTGCTGCGGGCAAGCCCCAGATGCAGCAGAAGCAGAAGCGGTTGC
GGCCGGCGGTGCTGGTGTCCTCGCCGGCGCCGCCTCGTGTAGCATGCGAT
GTGAGCGGCAGCAGCGGCGGAAGCGGTAGCGGCGGCGGCGGCGGAAAGAA
GAGGAAGAGCGCCGTTGTCGGGGGTGAGGGGTGCGGGAAGAAGCAGCAGC
AGCAGCGGGGGTCGATGGGCAGGAAGAGGCTCCAGCCCAACAAGGAAAAA
AACAGGCAGACCAAGGTCATCAGTCACCCGGCGGCGAGGTCAAGCGCCCC
GCCTCTCCGCTTACCCTCTCGAGGCCGATCGGATTTCGATTTCGATTCCG
ACGACTCAGCGGCGGACGACGAAAACCGTGCGTGGAATGCCGTACCCGCA
GCGGTGGAGCCGGCGAGCAGGAAGAAGGCACGGGGCGGGGGTGCTGCCGG
GAACAAGGTGAAGCGAATGCGTGCATCGTCGGGCGGCAGGCGAGAGGCGG
CGGACGGTAGCAGAGCGCGACCCCTGGAGGGGTTTGCGGCAACGAGTCCG
GCCCCTGGCACCCGCGGTGCAGGCACGAAAGCGACGACGACCGCAGCTAG
TCCTTCCTCTTCTCCGAAGCAGACGGCTCACCACAGCAGTACTTCAACGG
CAAGGAGCGGTGGTGGCAGCAGCGAGGCTAGTGCATCATTCTCTCCGCGG
GGACCGTGGCGCCTCGGCGCTCTGTTCGCAGACTCAGACGACGACGACTC
CGAGGGAGACGGGGAGGGGGGCGGGGGTCTCGCAGGGTGCAACTGGAGGC
TGTCTGATGACGAGAACGAAGGCGACGACGAGATCGACCTGCACAAGAGG
AGGAGCCCACGGCGGTTTGCTGCCAGGAAAGAGGGTCCCGTGTCTGCCAG
GAAAAAAATGCGCAGGGCGAGCGGCGGCGGCGGCGGCGGTAGGGGAAGCG
ATGGATGCAATTCCGCTGGCGGTAGTGGCGGCCGGGGGGGAGGTAGTGGA
GCCATGGTGGAGAAGGCTGGTGGTGGTGCCGACGGTAGTCTCTCGCCGTC
CGTCCCCGTCGTCGATGGTACAGCTGCTGGCGGTAGCCCAGGCAAGGCTT
CGACGAGCCAGCAGGGCATCGAGGAGCAGGCGGAGCATGCCGAGCTGGAA
GCGATTCGAGCGCAGTTCAGGAAGGTGGACTCCCACCGTCTGAGCCTGTC
GCGCTAG