EsuBft733_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft733_9a-0001
Unique NameEsuBft733_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_544contigScaffold_544:45174..46955 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft733_9
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length74
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft733_9aEsuBft733_9aEctocarpus subulatus male Bft15bgeneScaffold_544 45174..46955 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft733_9a-0001-exonagat-exon-57210Ectocarpus subulatus male Bft15bexonScaffold_544 45174..45865 -
EsuBft733_9a-0001-exonEsuBft733_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_544 46901..46955 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft733_9a-0001-cdsEsuBft733_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_544 45174..45833 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft733_9a-0001-exonagat-five_prime_utr-13379Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_544 45834..45865 -
EsuBft733_9a-0001-exonagat-five_prime_utr-13380Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_544 46901..46955 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft733_9a-0001EsuBft733_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_544 45174..45833 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft733_9a-0001 ID=EsuBft733_9a-0001|Name=EsuBft733_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=747bp|location=Sequence derived from alignment at Scaffold_544:45174..46955- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CAAGCCACCGTCGGGCGGGCATTCCTTTAAACTTGGCGTCAATCTGGCAG
GCACGAAGCAGAAATGTCGGAGAAGTCGGAGGAACTGATGGACTTTGAAG
AAGAGGAGGTGGAGAACGCGTCCCAGTCTTCACAGGGGGAGGACGCATCC
CAGTCTTCCCCGGACCATCGTGAAGTCTATGGACAAGGTCTTCTTCGCGA
CATCGAGGCGGCCCGCCCCAAGGCTCTGGCTGCAGCTTACCGCTCGGGCA
GCATCACCCTCCGGGACATTGTGGACGCGGCCCGCCTTTCCTCCCCCCAC
CCCCTTGCCGTCCCCACTGTTGACTTTGACCTAGACGAGGAGGAGTTCGT
GGAGATGTCAAACGATGAAGCCGACGCGTGGACACAACTTCAGACCATCT
TCAACCAGCGGCTGCAGGCTGAGCTCGACCAGGCGGCGGAGGACGCGGAG
CAACGGGCCCGAGATGAGGAGGCCGCTCGGAGGGCTCGGGAGCTAACAGC
TCAGCGGGAGAGGGAGGAAGAAGCTGCGCGGGCCGTGCAACGGGAGCGGG
AGCGCGAGGAAGCGGAGAGGCGCGCGATAGAACAGCGGCGAGCGGCCAGG
AGGCAACTATACAACGACACGGTGAAGGCTCGCCACGAGTTCGAAGAAAG
GAGGAATCGTCTTCGCCCCGTCGAGACATCGGCCGCTCCGTCCCTCTCTG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNN
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protein sequence of EsuBft733_9a-0001

>EsuBft733_9 ID=EsuBft733_9|Name=EsuBft733_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=220bp
MDFEEEEVENASQSSQGEDASQSSPDHREVYGQGLLRDIEAARPKALAAA
YRSGSITLRDIVDAARLSSPHPLAVPTVDFDLDEEEFVEMSNDEADAWTQ
LQTIFNQRLQAELDQAAEDAEQRARDEEAARRARELTAQREREEEAARAV
QREREREEAERRAIEQRRAARRQLYNDTVKARHEFEERRNRLRPVETSAA
PSLSAPPPPPPPPPPPPPXX
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mRNA from alignment at Scaffold_544:45174..46955-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft733_9a-0001 ID=EsuBft733_9a-0001|Name=EsuBft733_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1782bp|location=Sequence derived from alignment at Scaffold_544:45174..46955- (Ectocarpus subulatus male Bft15b)
CAAGCCACCGTCGGGCGGGCATTCCTTTAAACTTGGCGTCAATCTGGCAG
GCACGGTAAGAGAGAATTGGACGCGATTCTTCCCTTTCGTGCGCCGAGGC
ACGTTTTGCTCACGACCACCACACTGCTTGTTGTTAGGTCTCACCACCCA
CGAGAATTTAGACTTCGCCCTTATTGGCGATTACCTGCGGGATGCCGGCT
CATGATGCTTTCGCTCGTCGCTCACGAGACTGGGACCTTGCTAGTGATAC
GCGCATAGGAGGGCGCCGCGGTGATTCTCCCGATTTTTCTTACATGAAAT
GCCCATCACGAGCCATTTTGTCTGCTTCGGGAGTGCATGAAGTTCTTTCT
GTGGCGGATACGTTGTGGCGGCAGCGGCCTGAGCTGCAACCCCTGTTTAG
TGGGGCTCGAGATGACAGCATGCTCCCCGCTTCTACTACTGCTCCTACTG
CTTTTGTGCCGGCTTACCGGCCTGCATCCGCCGACTTCCCCGTGGTGCTC
TCTGATTTGACTCCACGTATTTCGACATGGCGAATTTTATGTGTACACAA
GTTGGGCGTTCGATACACCACCGATCTGCCCTTCATTTTTCGAGAACAAC
TCACGTTTTTTTTTTGGGCCATCGGCTATGCATGAAAAAGACCTCGAGTT
GGAGCCTTTGCTGCCGCGCAAACCCACTGCGGTCTTTCCCCGCACCTCAG
CGCCTGTTGCGGCAAAACGTCGTGCTGCGCTGCGCGAGTTTTGGACAGAC
AAACTAGTCTCCTCGTATAACACAGGCCCTTTTGTGCTAGCTTCTACTGC
TGTTGGTACATGGCATGGAGTGCTTCTGGATGCCTTTTATGATTGGTTGG
ATCCGCTTCAACCAAGGGTACATCAAGCTTTTCTGGCCGGGCGTATGCTC
TCTTGCGGATATCTTCGCTTTCCGTTTGGACCAAGGCAGGACCCTCCGGC
CGTCGCACCCACTTTTACCGTGTCTTCTGTCCCTGGCTCTGCTGTCCCTG
GCTCTGCTGTTGCCCCCACGGCCGTGGCCCCCGCCATTGCTGTTTCTACT
CGTGATCGGGAATACCCCGGTTCTCTCGCTTTTTTTTCAGAAGCAGAAAT
GTCGGAGAAGTCGGAGGAACTGATGGACTTTGAAGAAGAGGAGGTGGAGA
ACGCGTCCCAGTCTTCACAGGGGGAGGACGCATCCCAGTCTTCCCCGGAC
CATCGTGAAGTCTATGGACAAGGTCTTCTTCGCGACATCGAGGCGGCCCG
CCCCAAGGCTCTGGCTGCAGCTTACCGCTCGGGCAGCATCACCCTCCGGG
ACATTGTGGACGCGGCCCGCCTTTCCTCCCCCCACCCCCTTGCCGTCCCC
ACTGTTGACTTTGACCTAGACGAGGAGGAGTTCGTGGAGATGTCAAACGA
TGAAGCCGACGCGTGGACACAACTTCAGACCATCTTCAACCAGCGGCTGC
AGGCTGAGCTCGACCAGGCGGCGGAGGACGCGGAGCAACGGGCCCGAGAT
GAGGAGGCCGCTCGGAGGGCTCGGGAGCTAACAGCTCAGCGGGAGAGGGA
GGAAGAAGCTGCGCGGGCCGTGCAACGGGAGCGGGAGCGCGAGGAAGCGG
AGAGGCGCGCGATAGAACAGCGGCGAGCGGCCAGGAGGCAACTATACAAC
GACACGGTGAAGGCTCGCCACGAGTTCGAAGAAAGGAGGAATCGTCTTCG
CCCCGTCGAGACATCGGCCGCTCCGTCCCTCTCTGCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNN
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Coding sequence (CDS) from alignment at Scaffold_544:45174..46955-

>EsuBft733_9a-0001 ID=EsuBft733_9a-0001|Name=EsuBft733_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=660bp|location=Sequence derived from alignment at Scaffold_544:45174..46955- (Ectocarpus subulatus male Bft15b)
ATGGACTTTGAAGAAGAGGAGGTGGAGAACGCGTCCCAGTCTTCACAGGG
GGAGGACGCATCCCAGTCTTCCCCGGACCATCGTGAAGTCTATGGACAAG
GTCTTCTTCGCGACATCGAGGCGGCCCGCCCCAAGGCTCTGGCTGCAGCT
TACCGCTCGGGCAGCATCACCCTCCGGGACATTGTGGACGCGGCCCGCCT
TTCCTCCCCCCACCCCCTTGCCGTCCCCACTGTTGACTTTGACCTAGACG
AGGAGGAGTTCGTGGAGATGTCAAACGATGAAGCCGACGCGTGGACACAA
CTTCAGACCATCTTCAACCAGCGGCTGCAGGCTGAGCTCGACCAGGCGGC
GGAGGACGCGGAGCAACGGGCCCGAGATGAGGAGGCCGCTCGGAGGGCTC
GGGAGCTAACAGCTCAGCGGGAGAGGGAGGAAGAAGCTGCGCGGGCCGTG
CAACGGGAGCGGGAGCGCGAGGAAGCGGAGAGGCGCGCGATAGAACAGCG
GCGAGCGGCCAGGAGGCAACTATACAACGACACGGTGAAGGCTCGCCACG
AGTTCGAAGAAAGGAGGAATCGTCTTCGCCCCGTCGAGACATCGGCCGCT
CCGTCCCTCTCTGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCNNNNN
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