Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LN28 |
| ProteomeId | EsuBft733_6 |
| Protein domains | Coil |
| Protein domains | PTHR19303 |
| Protein domains | IPR007889 |
| Protein domains | IPR004875 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Max annot lvl | 2759|Eukaryota |
| Length | 330 |
| Hectar predicted targeting category | other localisation |
| Evalue | 6.97e-68 |
| EggNOG OGs | 2CZS4@1|root,2SBGG@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | DDE superfamily endonuclease |
| COG category | S |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003677 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft733_6a-0001 ID=EsuBft733_6a-0001|Name=EsuBft733_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3309bp|location=Sequence derived from alignment at Scaffold_544:100812..104399+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TCTTCGGCCTTCTGCTGATTTTGCTGATAAGCATGGGCCGCCGCAGGGTG
GACGCACAGCAAGCCCAGAAGGCTTGTGAAGCCGTGAGAGGTGGCATGTC
CGTTAGGAAGGCTGCTAAGGTCTATGATATTGATCGGCTTTCGCTCAAAC
GGCGCCTCGATGGAGAGGTGGCCATGGATGCAAAAGTAGGTCCTGGGACT
GTCATGAGTGAGGAGGAGGAAAATTCGATTGAAGATTGTCTGCTGTACGC
TGGTCGTAACTGCCTAGCTGTGAGTCGGCTCCACCTGCTGGAAACCGTAA
GACTGCTCTGCCTGGACCGCAAGACCCCGTGGGATCCAGAGAAGGGCCCG
GGGAAGGATTGGCTAGCTGGCTTCCTCGAAAGGCACCCGCGGGTTAGGGA
GCGCACCACTCGCATCTACGAGGCCAACAGAGTCACCGATGAGAGCGAAC
CTCGCATCGTAGAGTTCTACAGGAAGTGGGCAGCTCTCCTCGAGGACCTC
AAGCCGGAGGCCGACCACGTGCACAACACGGATGAGACAGGTACCACTCC
GCAAGGCAACAAGACCATGAAGGCCTACTGTCAGGCAGGGCAGAAGGTGG
TCGAGTCGGTTCGGGCCAACTCGCGAGAGAACACCACCTTGGTCACCACC
ATCAGCGCTGATGGCTCCACGTGGGCGCCGACTATCATCTTCAAAGGGCA
GCGACTCCAGCCTGACTGGTTTGCGGAGAAGAACGGGCCGCCGGACGCGA
GGTACACTTGTACGGATTCTTCGTTCATGCAGGGTAACGTGTTCATCAAG
TACCTTAAAGACTTCCACCAGCAGCTTTGCAAACGAGGCTTGATCGACGG
AAAGCCGCACATCCTCCTGCTTGATGGACACGCATCGCACGTGAGCGTCG
AGGTCATCCAACTGGCCATGGAACTCAACATCGTCCTCTTTCAGCTGCCG
TCCCACACGTCGCACATCACCCAGCCCTTGGACGTCGTCGCCTTCGGAGC
CTTCAAGAGGGAGGTGACTAAGGTGCTGTCAGACTACTACCGCGTGTCCG
GCGGGTTGCTTCCACAGAAGCGTGACGTCCCCGGCGTTATCGCGGCGGCT
TGGGGGGCGACTTTCACATCGGAGCGAAATAGATCATCCTTCGCCGGGGC
GGGCCTGTGGCCTGTGAACATGGAGCGAGCGATGAGCCGGCTTCGGGGCA
CAGCAAAGAGGAACGAGAACCAGACCGGGCGCCCTCCCCTAAAAGACGTC
CCCATCGCTGTAGGCAACGAGCAGCTCGAGCAGGACATCGGAGAGAGGGG
CATGAGGCAGCTGAAGGCGGCTGGACATCTAACCACGGGACTCAGGGTGA
GCACGGTGATGCTCGGCAGCGTCATCCGTCAGAGGAAGCGCGCCAAGAAA
ATGGCGACCTCGCGGGGCTCTTTGGGCCTTCCCGACGGCGGCAACATCAC
CGCGGAAGACTTCCTGGCAAAGGTTGCCGAGAAGGAGCGCGCAGACAAGG
AGGAGAGTGACGCAAAAGCGGAGAGGGCCAGGGAGCGCGAAAGGAAGAGG
GCAGAGAGGGCGGCGGCGGAGCTGGCACGGCAGGCGAACACGGGCGGTCG
AGGACGCGGGCGAGGGCGGCAGGGAGGAGGGAGGGGGGGCGAGCGGGGCG
GGGGAACGGGGGCGGGGACGGGAGGGCGCAATGTCAATGCCGGGCAGGGA
GCAGGGCGAGGGGGGCGAGGAGAGCCAGCGGGGCGAGGGGGGCGAGGGGG
GCGCGGCGGGCGAGGGGAGCCAGAGGGGCGAGGGGGGCGAGGGGGGCGCG
GGAGAGGGGGGGGGCGTGAGGCGAGCGGACAAGGGAGGGGCCGCGGGGCC
GCGGCGGGGGGACGCGGCCGAGGAGGGGGTGGAAGAGGGGCCTCACCTGG
CCGGGGACGAGGAGTGGCTGGAGCAGAAGAAACGGCTTTGCCCGAACGCC
AACCGGCACCCTCCGTGTCCCGGGTTGGACGACAACGGACGCCGACACCC
ATTGTTGACGTGTAGCCGCATCATGCTCCAAACTTCTGCAATTTTTACGT
GGAGTCGATGCGTACCCTATTGCACAATGTTTGTTGCCGGTAAGGTAGTC
AACGGTGGCTTCGAGCGTGCCAGTACCGTGGGGGGAGGGGGTGGCGGATT
TTTCCCGAAACCCGGGGATGTCGGGTTTCCGTCCCCCGGTGTTGTCCCCG
GGTGTCTTCCATTTTTTTTTTCGTTGCGCATGAGTGTTTCTCAATCATAT
TTGGACGTTCCCTCCAAAAGGCTGGTCGTGGAAATAAAACGTTGGCTTGA
TTTGTCGTTATGATCGGCGTGAATTCTTGCCCTACCGGTAAGCCGATTCG
GCAAAATGTACCCGTATTAACCGTAGAGAACGTCGTGAGTTGTACTCCAA
ATGACGTCAAATTTCACGCGGATTCGGCTTGCACGCCATAAAATGTGATA
TGTTGTTCGTAGACTTGCTACGGTGACAAGAGAGCGTGCCAGTACGGTTG
GGGGGGACGGGGGGGGGGTCGGCGGCTGGTTTTGCCCGAAACCCGGGGAT
ATCGTCATTCCGTCCCCGGGTGGCCTCCAAACTTATTTATTTTTTTCGAT
TAATGCTTCTAACTCCTATTTGGGTGTTCCCCCAAAATTTCATGTCCTGG
GGGTGTATGAAAAGCCCAGAACAGGCGATACAGCAGTAGTCGGTGCACGG
CGCTGATTCGTATCATGGCGGCAAGCAAAACAACGAAAATATACCAATTT
TTGAACAAGCATTATTTTTTGACCACAACTCCTTTCGGCATAATTTTTTT
TTTCGAGGTCAGAAAATGACAGGATGAAGCCAACTATGCTTCAAAACTGT
TGTTTGGATTCGTTTTTGACGGATTATCACGCCGTACAGGCAAACGGCGG
CGGAAAACGGTCCCAAGCATCTGCGCCGAAAACCCGGGGATATCTCGTAT
TCATCCCCGGGAGCCTTTAAAAAAAAAAAAACGTCGTTTTTCTTTGTGTT
CATCGTATTGGACGATTGTGTGCAAAATCTTGGCTCTTGAAACGCATTTT
AACCCGCGCAATCAGCACCTCGTAAAAGTGGTTCTTAATACCCTCCAACC
GGATTCTGTGGTACTTCCAACTTCAACTTAGGCAAAATAGCTACAGCCTT
AACTCGTTACCAATAACTTTTTTTTTTTTTTTCTTTGACAGGTAGTTGAT
CATGTTAGCTATCCTTCGGTACCTAGACATCATCCTATCTCGTTAAACTG
ACCAAGAACGAGCTCTTGGCGCGGGGGGTGGCTTAAGTGGTTCTTAATAC
CCGCCGCTA back to topprotein sequence of EsuBft733_6a-0001 >EsuBft733_6 ID=EsuBft733_6|Name=EsuBft733_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=660bp
MGRRRVDAQQAQKACEAVRGGMSVRKAAKVYDIDRLSLKRRLDGEVAMDA
KVGPGTVMSEEEENSIEDCLLYAGRNCLAVSRLHLLETVRLLCLDRKTPW
DPEKGPGKDWLAGFLERHPRVRERTTRIYEANRVTDESEPRIVEFYRKWA
ALLEDLKPEADHVHNTDETGTTPQGNKTMKAYCQAGQKVVESVRANSREN
TTLVTTISADGSTWAPTIIFKGQRLQPDWFAEKNGPPDARYTCTDSSFMQ
GNVFIKYLKDFHQQLCKRGLIDGKPHILLLDGHASHVSVEVIQLAMELNI
VLFQLPSHTSHITQPLDVVAFGAFKREVTKVLSDYYRVSGGLLPQKRDVP
GVIAAAWGATFTSERNRSSFAGAGLWPVNMERAMSRLRGTAKRNENQTGR
PPLKDVPIAVGNEQLEQDIGERGMRQLKAAGHLTTGLRVSTVMLGSVIRQ
RKRAKKMATSRGSLGLPDGGNITAEDFLAKVAEKERADKEESDAKAERAR
ERERKRAERAAAELARQANTGGRGRGRGRQGGGRGGERGGGTGAGTGGRN
VNAGQGAGRGGRGEPAGRGGRGGRGGRGEPEGRGGRGGRGRGGGREASGQ
GRGRGAAAGGRGRGGGGRGASPGRGRGVAGAEETALPERQPAPSVSRVGR
QRTPTPIVDV back to topmRNA from alignment at Scaffold_544:100812..104399+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft733_6a-0001 ID=EsuBft733_6a-0001|Name=EsuBft733_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3588bp|location=Sequence derived from alignment at Scaffold_544:100812..104399+ (Ectocarpus subulatus male Bft15b)
TCTTCGGCCTTCTGCTGATTTTGCTGATAAGCATGGGCCGCCGCAGGGTG
GACGCACAGCAAGCCCAGAAGGCTTGTGAAGCCGTGAGAGGTGGCATGTC
CGTTAGGAAGGCTGCTAAGGTCTATGATATTGATCGGCTTTCGCTCAAAC
GGCGCCTCGATGGAGAGGTGGCCATGGATGCAAAAGTAGGTCCTGGGACT
GTCATGAGTGAGGAGGAGGAAAATTCGATTGAAGATTGTCTGCTGTACGC
TGGTCGTAACTGCCTAGCTGTGAGTCGGCTCCACCTGCTGGAAACCGTAA
GACTGCTCTGCCTGGACCGCAAGACCCCGTGGGATCCAGAGAAGGGCCCG
GGGAAGGATTGGCTAGCTGGCTTCCTCGAAAGGCACCCGCGGGTTAGGGA
GCGCACCACTCGCATCTACGAGGCCAACAGAGTCACCGATGAGAGCGAAC
CTCGCATCGTAGAGTTCTACAGGAAGTGGGCAGCTCTCCTCGAGGACCTC
AAGCCGGAGGCCGACCACGTGCACAACACGGATGAGACAGGTGAGATGTA
CCTGTAGACTAGTCTAGACTAGTGTGGTATCAACAGGAGCTGTATTAGGC
GAGCTCCTGTGCAAAGATCTCGAAGGTAGCATGTCAATATCTGGCGGAGT
TCTGCCGTCGGCCGGACTTGCGTGCGGCGTTTTGGTGTGTACACAGCAGT
ATCTACTCTAGGACCCGGTCTTCATTGCATGGTTTTTGTGCGTGGGTAAA
CCTTCGCATCTTGTATGTGCCTTTACGTTTCTCTCCCCCTGTTCTCCTCC
TCTCTCGCGATTGATTTAGGTACCACTCCGCAAGGCAACAAGACCATGAA
GGCCTACTGTCAGGCAGGGCAGAAGGTGGTCGAGTCGGTTCGGGCCAACT
CGCGAGAGAACACCACCTTGGTCACCACCATCAGCGCTGATGGCTCCACG
TGGGCGCCGACTATCATCTTCAAAGGGCAGCGACTCCAGCCTGACTGGTT
TGCGGAGAAGAACGGGCCGCCGGACGCGAGGTACACTTGTACGGATTCTT
CGTTCATGCAGGGTAACGTGTTCATCAAGTACCTTAAAGACTTCCACCAG
CAGCTTTGCAAACGAGGCTTGATCGACGGAAAGCCGCACATCCTCCTGCT
TGATGGACACGCATCGCACGTGAGCGTCGAGGTCATCCAACTGGCCATGG
AACTCAACATCGTCCTCTTTCAGCTGCCGTCCCACACGTCGCACATCACC
CAGCCCTTGGACGTCGTCGCCTTCGGAGCCTTCAAGAGGGAGGTGACTAA
GGTGCTGTCAGACTACTACCGCGTGTCCGGCGGGTTGCTTCCACAGAAGC
GTGACGTCCCCGGCGTTATCGCGGCGGCTTGGGGGGCGACTTTCACATCG
GAGCGAAATAGATCATCCTTCGCCGGGGCGGGCCTGTGGCCTGTGAACAT
GGAGCGAGCGATGAGCCGGCTTCGGGGCACAGCAAAGAGGAACGAGAACC
AGACCGGGCGCCCTCCCCTAAAAGACGTCCCCATCGCTGTAGGCAACGAG
CAGCTCGAGCAGGACATCGGAGAGAGGGGCATGAGGCAGCTGAAGGCGGC
TGGACATCTAACCACGGGACTCAGGGTGAGCACGGTGATGCTCGGCAGCG
TCATCCGTCAGAGGAAGCGCGCCAAGAAAATGGCGACCTCGCGGGGCTCT
TTGGGCCTTCCCGACGGCGGCAACATCACCGCGGAAGACTTCCTGGCAAA
GGTTGCCGAGAAGGAGCGCGCAGACAAGGAGGAGAGTGACGCAAAAGCGG
AGAGGGCCAGGGAGCGCGAAAGGAAGAGGGCAGAGAGGGCGGCGGCGGAG
CTGGCACGGCAGGCGAACACGGGCGGTCGAGGACGCGGGCGAGGGCGGCA
GGGAGGAGGGAGGGGGGGCGAGCGGGGCGGGGGAACGGGGGCGGGGACGG
GAGGGCGCAATGTCAATGCCGGGCAGGGAGCAGGGCGAGGGGGGCGAGGA
GAGCCAGCGGGGCGAGGGGGGCGAGGGGGGCGCGGCGGGCGAGGGGAGCC
AGAGGGGCGAGGGGGGCGAGGGGGGCGCGGGAGAGGGGGGGGGCGTGAGG
CGAGCGGACAAGGGAGGGGCCGCGGGGCCGCGGCGGGGGGACGCGGCCGA
GGAGGGGGTGGAAGAGGGGCCTCACCTGGCCGGGGACGAGGAGTGGCTGG
AGCAGAAGAAACGGCTTTGCCCGAACGCCAACCGGCACCCTCCGTGTCCC
GGGTTGGACGACAACGGACGCCGACACCCATTGTTGACGTGTAGCCGCAT
CATGCTCCAAACTTCTGCAATTTTTACGTGGAGTCGATGCGTACCCTATT
GCACAATGTTTGTTGCCGGTAAGGTAGTCAACGGTGGCTTCGAGCGTGCC
AGTACCGTGGGGGGAGGGGGTGGCGGATTTTTCCCGAAACCCGGGGATGT
CGGGTTTCCGTCCCCCGGTGTTGTCCCCGGGTGTCTTCCATTTTTTTTTT
CGTTGCGCATGAGTGTTTCTCAATCATATTTGGACGTTCCCTCCAAAAGG
CTGGTCGTGGAAATAAAACGTTGGCTTGATTTGTCGTTATGATCGGCGTG
AATTCTTGCCCTACCGGTAAGCCGATTCGGCAAAATGTACCCGTATTAAC
CGTAGAGAACGTCGTGAGTTGTACTCCAAATGACGTCAAATTTCACGCGG
ATTCGGCTTGCACGCCATAAAATGTGATATGTTGTTCGTAGACTTGCTAC
GGTGACAAGAGAGCGTGCCAGTACGGTTGGGGGGGACGGGGGGGGGGTCG
GCGGCTGGTTTTGCCCGAAACCCGGGGATATCGTCATTCCGTCCCCGGGT
GGCCTCCAAACTTATTTATTTTTTTCGATTAATGCTTCTAACTCCTATTT
GGGTGTTCCCCCAAAATTTCATGTCCTGGGGGTGTATGAAAAGCCCAGAA
CAGGCGATACAGCAGTAGTCGGTGCACGGCGCTGATTCGTATCATGGCGG
CAAGCAAAACAACGAAAATATACCAATTTTTGAACAAGCATTATTTTTTG
ACCACAACTCCTTTCGGCATAATTTTTTTTTTCGAGGTCAGAAAATGACA
GGATGAAGCCAACTATGCTTCAAAACTGTTGTTTGGATTCGTTTTTGACG
GATTATCACGCCGTACAGGCAAACGGCGGCGGAAAACGGTCCCAAGCATC
TGCGCCGAAAACCCGGGGATATCTCGTATTCATCCCCGGGAGCCTTTAAA
AAAAAAAAAACGTCGTTTTTCTTTGTGTTCATCGTATTGGACGATTGTGT
GCAAAATCTTGGCTCTTGAAACGCATTTTAACCCGCGCAATCAGCACCTC
GTAAAAGTGGTTCTTAATACCCTCCAACCGGATTCTGTGGTACTTCCAAC
TTCAACTTAGGCAAAATAGCTACAGCCTTAACTCGTTACCAATAACTTTT
TTTTTTTTTTTCTTTGACAGGTAGTTGATCATGTTAGCTATCCTTCGGTA
CCTAGACATCATCCTATCTCGTTAAACTGACCAAGAACGAGCTCTTGGCG
CGGGGGGTGGCTTAAGTGGTTCTTAATACCCGCCGCTA back to topCoding sequence (CDS) from alignment at Scaffold_544:100812..104399+ >EsuBft733_6a-0001 ID=EsuBft733_6a-0001|Name=EsuBft733_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1983bp|location=Sequence derived from alignment at Scaffold_544:100812..104399+ (Ectocarpus subulatus male Bft15b)
ATGGGCCGCCGCAGGGTGGACGCACAGCAAGCCCAGAAGGCTTGTGAAGC
CGTGAGAGGTGGCATGTCCGTTAGGAAGGCTGCTAAGGTCTATGATATTG
ATCGGCTTTCGCTCAAACGGCGCCTCGATGGAGAGGTGGCCATGGATGCA
AAAGTAGGTCCTGGGACTGTCATGAGTGAGGAGGAGGAAAATTCGATTGA
AGATTGTCTGCTGTACGCTGGTCGTAACTGCCTAGCTGTGAGTCGGCTCC
ACCTGCTGGAAACCGTAAGACTGCTCTGCCTGGACCGCAAGACCCCGTGG
GATCCAGAGAAGGGCCCGGGGAAGGATTGGCTAGCTGGCTTCCTCGAAAG
GCACCCGCGGGTTAGGGAGCGCACCACTCGCATCTACGAGGCCAACAGAG
TCACCGATGAGAGCGAACCTCGCATCGTAGAGTTCTACAGGAAGTGGGCA
GCTCTCCTCGAGGACCTCAAGCCGGAGGCCGACCACGTGCACAACACGGA
TGAGACAGGTACCACTCCGCAAGGCAACAAGACCATGAAGGCCTACTGTC
AGGCAGGGCAGAAGGTGGTCGAGTCGGTTCGGGCCAACTCGCGAGAGAAC
ACCACCTTGGTCACCACCATCAGCGCTGATGGCTCCACGTGGGCGCCGAC
TATCATCTTCAAAGGGCAGCGACTCCAGCCTGACTGGTTTGCGGAGAAGA
ACGGGCCGCCGGACGCGAGGTACACTTGTACGGATTCTTCGTTCATGCAG
GGTAACGTGTTCATCAAGTACCTTAAAGACTTCCACCAGCAGCTTTGCAA
ACGAGGCTTGATCGACGGAAAGCCGCACATCCTCCTGCTTGATGGACACG
CATCGCACGTGAGCGTCGAGGTCATCCAACTGGCCATGGAACTCAACATC
GTCCTCTTTCAGCTGCCGTCCCACACGTCGCACATCACCCAGCCCTTGGA
CGTCGTCGCCTTCGGAGCCTTCAAGAGGGAGGTGACTAAGGTGCTGTCAG
ACTACTACCGCGTGTCCGGCGGGTTGCTTCCACAGAAGCGTGACGTCCCC
GGCGTTATCGCGGCGGCTTGGGGGGCGACTTTCACATCGGAGCGAAATAG
ATCATCCTTCGCCGGGGCGGGCCTGTGGCCTGTGAACATGGAGCGAGCGA
TGAGCCGGCTTCGGGGCACAGCAAAGAGGAACGAGAACCAGACCGGGCGC
CCTCCCCTAAAAGACGTCCCCATCGCTGTAGGCAACGAGCAGCTCGAGCA
GGACATCGGAGAGAGGGGCATGAGGCAGCTGAAGGCGGCTGGACATCTAA
CCACGGGACTCAGGGTGAGCACGGTGATGCTCGGCAGCGTCATCCGTCAG
AGGAAGCGCGCCAAGAAAATGGCGACCTCGCGGGGCTCTTTGGGCCTTCC
CGACGGCGGCAACATCACCGCGGAAGACTTCCTGGCAAAGGTTGCCGAGA
AGGAGCGCGCAGACAAGGAGGAGAGTGACGCAAAAGCGGAGAGGGCCAGG
GAGCGCGAAAGGAAGAGGGCAGAGAGGGCGGCGGCGGAGCTGGCACGGCA
GGCGAACACGGGCGGTCGAGGACGCGGGCGAGGGCGGCAGGGAGGAGGGA
GGGGGGGCGAGCGGGGCGGGGGAACGGGGGCGGGGACGGGAGGGCGCAAT
GTCAATGCCGGGCAGGGAGCAGGGCGAGGGGGGCGAGGAGAGCCAGCGGG
GCGAGGGGGGCGAGGGGGGCGCGGCGGGCGAGGGGAGCCAGAGGGGCGAG
GGGGGCGAGGGGGGCGCGGGAGAGGGGGGGGGCGTGAGGCGAGCGGACAA
GGGAGGGGCCGCGGGGCCGCGGCGGGGGGACGCGGCCGAGGAGGGGGTGG
AAGAGGGGCCTCACCTGGCCGGGGACGAGGAGTGGCTGGAGCAGAAGAAA
CGGCTTTGCCCGAACGCCAACCGGCACCCTCCGTGTCCCGGGTTGGACGA
CAACGGACGCCGACACCCATTGTTGACGTGTAG back to top
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