EsuBft733_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft733_4a-0001
Unique Name	EsuBft733_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_544	contig	Scaffold_544:114338..115530 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft733_4
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	119
Hectar predicted targeting category	no signal peptide or anchor
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft733_4a	EsuBft733_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_544 114338..115530 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft733_4a-0001-exon	EsuBft733_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_544 114338..115530 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft733_4a-0001-cds	EsuBft733_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_544 114338..114511 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft733_4a-0001-exon	agat-three_prime_utr-20838	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_544 114512..115530 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft733_4a-0001	EsuBft733_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_544 114338..114511 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_544:114338..115530+
coding sequence from alignment at Scaffold_544:114338..115530+

spliced messenger RNA

>EsuBft733_4a-0001 ID=EsuBft733_4a-0001|Name=EsuBft733_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1193bp|location=Sequence derived from alignment at Scaffold_544:114338..115530+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGTGCCTTTGAACCACTCCATGATGTCGACTCGTCTGCGCCACTC
GATGGAGATGAAGGGTCGTTCTCTGGCGGGTTCTCGCCTCGCCCACGCTG
CAGACACGGGGATGAACGAGTGGGAGGCGACATGCTCGAACCCCTCGACA
AAGGTGACGAGACTTCACTGCTGACTTCCTGCGTACCTCCTCCACGTGCA
CGCGAGGTAGGGACCACGTCTACGACCAAGCTGGAGCTGCTGCCGGAGTC
GCTCTCCTCTCCGGTCGCACTGCTGTCCATGCAACCACTCAGGGACGCCC
CCTCCTCCTTCTCCTCCTGCCCACTCACAGACGGCCGGGCTCTTTCCGCC
TGGGCTCCTGCCGCCTCGCGCTGAGTCGCGATCCTCTCTCCTCTTCCAGA
GGCCTTCCTACCTCGATCAAAGATGATCCAGTTCAAAATATAACGCGAGC
TGCTCTTCCGCTGCACGCGGGCACCAAGAACCTTCTCGCGCGCCCGAATC
CCGACCTAACAACTGCACATACGTTGCTGTGAAAGAAACCCCAGTCTCCG
CTGCTCAGCCTCCTGCGCACGGAGCGCTTGATTGCGTGCGCTCGTACGTG
CCGCTTCGTTCCGTCCTCGACGGAAAAAGTTGCCGGCGTATTTCTTCCGG
CCAACAAAAACTGAAAATCTTCAACAAATAACCCGGTGGATTTTTCCGTC
GGGACCCGGCCCAGACGGAAAAAAATCGCCCAACCGGAAAAAATCGGCCC
AAACGGACAAAAATTGGCGGACGGGGAAACCCGGGAATACCCCCTCTTTG
TTTAAATGTCCGCAAAATACGGAACACGCGGCGGCGTGATTTGGCGTGAT
GTTGGCACGCGCGTTGACGTCCTGAAGCAACTGGCGCGCCTACAGCGTAG
TAAGATTCGGCATGAGAGGCATAGCCAAATCATGCAGATGATTACGGCGG
CTCTGCTGTGTGCGGTGGCTGGAGAAGAGGAGCTTTTCCTCGTCCTGGCG
GTAGTGGCAATGCGGCAACTCCAATGCGTTCCCAACTCAAACCACGCTCC
CAACTCGAACCACGCCGCCGGGTGAACTGTGCTAACAACCCTGACTTCCA
AGCACTTGACCGCTGCTGTGACTGATGACTCGCTACCTCCCTCAAGGGGC
GGGGATGCACACGAGGTCCGCCGTAGGAGAGGCGGCTACCGCG

protein sequence of EsuBft733_4a-0001

>EsuBft733_4 ID=EsuBft733_4|Name=EsuBft733_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=57bp
MTVPLNHSMMSTRLRHSMEMKGRSLAGSRLAHAADTGMNEWEATCSNPST
KVTRLHC

mRNA from alignment at Scaffold_544:114338..115530+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft733_4a-0001 ID=EsuBft733_4a-0001|Name=EsuBft733_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1193bp|location=Sequence derived from alignment at Scaffold_544:114338..115530+ (Ectocarpus subulatus male Bft15b)
ATGACGGTGCCTTTGAACCACTCCATGATGTCGACTCGTCTGCGCCACTC
GATGGAGATGAAGGGTCGTTCTCTGGCGGGTTCTCGCCTCGCCCACGCTG
CAGACACGGGGATGAACGAGTGGGAGGCGACATGCTCGAACCCCTCGACA
AAGGTGACGAGACTTCACTGCTGACTTCCTGCGTACCTCCTCCACGTGCA
CGCGAGGTAGGGACCACGTCTACGACCAAGCTGGAGCTGCTGCCGGAGTC
GCTCTCCTCTCCGGTCGCACTGCTGTCCATGCAACCACTCAGGGACGCCC
CCTCCTCCTTCTCCTCCTGCCCACTCACAGACGGCCGGGCTCTTTCCGCC
TGGGCTCCTGCCGCCTCGCGCTGAGTCGCGATCCTCTCTCCTCTTCCAGA
GGCCTTCCTACCTCGATCAAAGATGATCCAGTTCAAAATATAACGCGAGC
TGCTCTTCCGCTGCACGCGGGCACCAAGAACCTTCTCGCGCGCCCGAATC
CCGACCTAACAACTGCACATACGTTGCTGTGAAAGAAACCCCAGTCTCCG
CTGCTCAGCCTCCTGCGCACGGAGCGCTTGATTGCGTGCGCTCGTACGTG
CCGCTTCGTTCCGTCCTCGACGGAAAAAGTTGCCGGCGTATTTCTTCCGG
CCAACAAAAACTGAAAATCTTCAACAAATAACCCGGTGGATTTTTCCGTC
GGGACCCGGCCCAGACGGAAAAAAATCGCCCAACCGGAAAAAATCGGCCC
AAACGGACAAAAATTGGCGGACGGGGAAACCCGGGAATACCCCCTCTTTG
TTTAAATGTCCGCAAAATACGGAACACGCGGCGGCGTGATTTGGCGTGAT
GTTGGCACGCGCGTTGACGTCCTGAAGCAACTGGCGCGCCTACAGCGTAG
TAAGATTCGGCATGAGAGGCATAGCCAAATCATGCAGATGATTACGGCGG
CTCTGCTGTGTGCGGTGGCTGGAGAAGAGGAGCTTTTCCTCGTCCTGGCG
GTAGTGGCAATGCGGCAACTCCAATGCGTTCCCAACTCAAACCACGCTCC
CAACTCGAACCACGCCGCCGGGTGAACTGTGCTAACAACCCTGACTTCCA
AGCACTTGACCGCTGCTGTGACTGATGACTCGCTACCTCCCTCAAGGGGC
GGGGATGCACACGAGGTCCGCCGTAGGAGAGGCGGCTACCGCG

Coding sequence (CDS) from alignment at Scaffold_544:114338..115530+

>EsuBft733_4a-0001 ID=EsuBft733_4a-0001|Name=EsuBft733_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=174bp|location=Sequence derived from alignment at Scaffold_544:114338..115530+ (Ectocarpus subulatus male Bft15b)
ATGACGGTGCCTTTGAACCACTCCATGATGTCGACTCGTCTGCGCCACTC
GATGGAGATGAAGGGTCGTTCTCTGGCGGGTTCTCGCCTCGCCCACGCTG
CAGACACGGGGATGAACGAGTGGGAGGCGACATGCTCGAACCCCTCGACA
AAGGTGACGAGACTTCACTGCTGA