EsuBft733_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft733_3a-0001
Unique NameEsuBft733_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_544contigScaffold_544:130478..133099 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft733_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length262
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft733_3aEsuBft733_3aEctocarpus subulatus male Bft15bgeneScaffold_544 130478..133099 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft733_3a-0001-exonEsuBft733_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_544 130478..133099 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft733_3a-0001-exonagat-three_prime_utr-20837Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_544 130478..132880 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft733_3a-0001-cdsEsuBft733_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_544 132881..133099 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft733_3a-0001EsuBft733_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_544 132881..133099 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft733_3a-0001 ID=EsuBft733_3a-0001|Name=EsuBft733_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2622bp|location=Sequence derived from alignment at Scaffold_544:130478..133099- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGATCTGAATTGCGTGACGGATAGGTGTGGTGACGCACTCTTCGG
CTGCTCGGCCTCGAGTGGTCTCTGCCCTTCCCTCTTCCCTCTAATACAAG
ACTTTCCCATCTCGGCCCTCACTGGCCGAGCTGCCTTTCTCCACAAACCT
ACAAGCTTCGGCCTACCCGGTTTATCCAACACGCTAGCGTCAACGACTTT
GTCGAGGGTGACTGGGTAGCGCCGATGGGCAGCCGCATGCACGGCTGACG
ACACCCAACCAGACGAAGAGGCCACCAACGGCGAGGGCCTGCACAGCAGC
AGCAACCCCAAGACCTACAGCAGCGCCATCGTCAGCTGCAGCCCGCCGTC
TACTTGGGTAGTAGGCCCGCTCAGGCACGTGATGACTTTTCAGTTTCCTA
CTGGACTGTTGTTGGTATCAACACACCCATTGCGGTGATGCGGTACTCAT
AGTGCCGTCCGATTCTAAACGCGGCAATACGCCGTGCGGTACTGCCGTCA
AACGCCAACGCTAACGCCACCTCCACCTCCACCCGGCACGGCCGTCAAAC
GCTCTCTCCTACTCTTTCTCTAGTATAATCGCGGCAACACGCTGCGCGGT
AATGCCGTCAAACGCCAACGCTTACTCAATCAAAACGCGACAATACGTCG
TGCGGTACTGCCGTCAAACTCCACCGCTCGGTCAAAGGCCGACTACCTGT
AGCACATGGGTAGACCCAACCTAGGTTACCAGTAATCCTCAAAAACTGAT
GCCAGTTTCTAAACTGATGATATGATGTGTGCGTGTAGCATGGTATTAGA
AATAGTATTGTGCGTAATGAAATGCAGTGATCGGCGAGGTTTTTGCTTTG
TCATCCTGACAGCCGTGCTGAGACCAACTTTCTCTCCCCGGCAATAGCGT
GATCAACGTTTTATCTGGGCTCTCTTTGGTAGCTACTTTTTGAGCAGCAG
GTTTAGCCTGATCAAAAATGCGTGATCAACGTTTTATCTGGACTCTTTTT
GGGTAGCAGGTTTAACCTGATCAAAAACTTTTCATGTCTTGGTTATATCA
CCGAGTACCTTAGACGTGTCAAGTCTCATCGACGTGCAACATTGGAACCT
TTTGTTGCAGATGAAAATTCCACAATACAGCAGTAGCACAGACGAAATAC
TGATTTCCGAAGATTGTTACACTTTGTCTTGAGGTTACTATTGTTGTGAG
ATTGCCGTTCCAAAATTGTGAAGGTTTTGACGTAGGATTGATTACCCTAT
GGTTAGAACAGTAGCAGCAGCTTTATTACTATTTTGCAACAGAGGACTAA
TCAACCTCCGTTTCAGGATGATATTCAGCTATTTGTGGTGTGGCGATATC
GCATCGGCAATCAATTTCAGACAAACCATTCCACAAGTAGGGTCCGACGA
CTTGAACGTGTGTTTCATTTATTGATTTTTCTGCTGCAGTCACTACTGTG
CAGAACCGGGGGGAATGTTCATGGTATGTGGTTCTCCTCAGTAGTGCTGG
TTTGTTCGGAACTAACCTGCCGCCATCTTTCCCTCCGAACGCGCGACCTG
CCCTACACCACCGCCGAGTCAATCCTACGGGAGCGACAATTGTTCTTCCT
CCACTTCAGGCGGACGCAAACATCCAAGCTCGAGCCGCGGCCAGCCGGAA
AATATGAAAGGAGATAGGCGACCGCGGCGAAGGCGTGCGAAATATCCGCT
GGGGGGGGGAGAAACAATGGCTTGGGCAATGGGTTAAGCGCTGGAGCTTG
ATGCGCCGGCAAATGTAGGGGTTCGAGTGTTATTGTTTTGGTATTGGATT
GTGTTGGTTGGATTGGATTTTGGTCTTGGTGTTGAATTGATTTCTAGCAT
TTGGGTTGTGAACGTTGTTTTGGCATTGGATTTGATTTGTTTTTGGTGTT
TCGTCGGGATTTATTTGTAGCAGGTTTGTTTTTCTTGAGTTTCGACTGGA
TGAATTTTGAATGTTGTTCTTTTGTTCTATGGTTCTGACTCCAACCCAAA
TCAGGGGGGCGGATCTCCCAGAGCAGGGGGGCACGTTGTTCTTTCGGAAG
GAATTCACTGTAGCTGGTGCTAAGTTTCTAGGGAGAAACAGTAAGGAAAA
TACTCGCTCGCGTATGTTCTGCTCAAATGATCTCAACGCTGAACGAATGT
TTGGGGATGGATGTTATTTGATCGGAAGTGTGAGAGTTGAGGATTGGTAC
CATGCCCAGAAGCGTTTTATCTGCGAAGTGGGCATGAAACGTATACTTTG
GTTTGTGTTCGAAAGTTTGTGTATTTTTGGTAGGATTCGTAGTCGGATGA
ACGTAGTCGGATGCACAACAAAGAAGGCGATTTTCTACGAATTGATCCGT
GTTTTGGAAAGAAAATGAAGAGGAGTTCCACAGACAGGTTTGACTCGATA
GATTGTTTAAGGCTTTCAGTTGTGCGAGGGACATAAGTACTTTGCGGGTG
TCGTTGCGGCGAAGGGCTGAGAAAGGATGGACCAGAGGAAGAGCGTTTTG
CAGAGAAGAAATGAAGACGATGGGACAAGACGTTGTGGGTTCAGGAACAC
TTGCATAATCGAATTCATTCTCGGTTACTTGTTTGTCATGGAGGAGTAGG
ATCCACGTTTTGGGTCTCATGG
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protein sequence of EsuBft733_3a-0001

>EsuBft733_3 ID=EsuBft733_3|Name=EsuBft733_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=72bp
MSDLNCVTDRCGDALFGCSASSGLCPSLFPLIQDFPISALTGRAAFLHKP
TSFGLPGLSNTLASTTLSRVTG
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mRNA from alignment at Scaffold_544:130478..133099-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft733_3a-0001 ID=EsuBft733_3a-0001|Name=EsuBft733_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2622bp|location=Sequence derived from alignment at Scaffold_544:130478..133099- (Ectocarpus subulatus male Bft15b)
ATGAGTGATCTGAATTGCGTGACGGATAGGTGTGGTGACGCACTCTTCGG
CTGCTCGGCCTCGAGTGGTCTCTGCCCTTCCCTCTTCCCTCTAATACAAG
ACTTTCCCATCTCGGCCCTCACTGGCCGAGCTGCCTTTCTCCACAAACCT
ACAAGCTTCGGCCTACCCGGTTTATCCAACACGCTAGCGTCAACGACTTT
GTCGAGGGTGACTGGGTAGCGCCGATGGGCAGCCGCATGCACGGCTGACG
ACACCCAACCAGACGAAGAGGCCACCAACGGCGAGGGCCTGCACAGCAGC
AGCAACCCCAAGACCTACAGCAGCGCCATCGTCAGCTGCAGCCCGCCGTC
TACTTGGGTAGTAGGCCCGCTCAGGCACGTGATGACTTTTCAGTTTCCTA
CTGGACTGTTGTTGGTATCAACACACCCATTGCGGTGATGCGGTACTCAT
AGTGCCGTCCGATTCTAAACGCGGCAATACGCCGTGCGGTACTGCCGTCA
AACGCCAACGCTAACGCCACCTCCACCTCCACCCGGCACGGCCGTCAAAC
GCTCTCTCCTACTCTTTCTCTAGTATAATCGCGGCAACACGCTGCGCGGT
AATGCCGTCAAACGCCAACGCTTACTCAATCAAAACGCGACAATACGTCG
TGCGGTACTGCCGTCAAACTCCACCGCTCGGTCAAAGGCCGACTACCTGT
AGCACATGGGTAGACCCAACCTAGGTTACCAGTAATCCTCAAAAACTGAT
GCCAGTTTCTAAACTGATGATATGATGTGTGCGTGTAGCATGGTATTAGA
AATAGTATTGTGCGTAATGAAATGCAGTGATCGGCGAGGTTTTTGCTTTG
TCATCCTGACAGCCGTGCTGAGACCAACTTTCTCTCCCCGGCAATAGCGT
GATCAACGTTTTATCTGGGCTCTCTTTGGTAGCTACTTTTTGAGCAGCAG
GTTTAGCCTGATCAAAAATGCGTGATCAACGTTTTATCTGGACTCTTTTT
GGGTAGCAGGTTTAACCTGATCAAAAACTTTTCATGTCTTGGTTATATCA
CCGAGTACCTTAGACGTGTCAAGTCTCATCGACGTGCAACATTGGAACCT
TTTGTTGCAGATGAAAATTCCACAATACAGCAGTAGCACAGACGAAATAC
TGATTTCCGAAGATTGTTACACTTTGTCTTGAGGTTACTATTGTTGTGAG
ATTGCCGTTCCAAAATTGTGAAGGTTTTGACGTAGGATTGATTACCCTAT
GGTTAGAACAGTAGCAGCAGCTTTATTACTATTTTGCAACAGAGGACTAA
TCAACCTCCGTTTCAGGATGATATTCAGCTATTTGTGGTGTGGCGATATC
GCATCGGCAATCAATTTCAGACAAACCATTCCACAAGTAGGGTCCGACGA
CTTGAACGTGTGTTTCATTTATTGATTTTTCTGCTGCAGTCACTACTGTG
CAGAACCGGGGGGAATGTTCATGGTATGTGGTTCTCCTCAGTAGTGCTGG
TTTGTTCGGAACTAACCTGCCGCCATCTTTCCCTCCGAACGCGCGACCTG
CCCTACACCACCGCCGAGTCAATCCTACGGGAGCGACAATTGTTCTTCCT
CCACTTCAGGCGGACGCAAACATCCAAGCTCGAGCCGCGGCCAGCCGGAA
AATATGAAAGGAGATAGGCGACCGCGGCGAAGGCGTGCGAAATATCCGCT
GGGGGGGGGAGAAACAATGGCTTGGGCAATGGGTTAAGCGCTGGAGCTTG
ATGCGCCGGCAAATGTAGGGGTTCGAGTGTTATTGTTTTGGTATTGGATT
GTGTTGGTTGGATTGGATTTTGGTCTTGGTGTTGAATTGATTTCTAGCAT
TTGGGTTGTGAACGTTGTTTTGGCATTGGATTTGATTTGTTTTTGGTGTT
TCGTCGGGATTTATTTGTAGCAGGTTTGTTTTTCTTGAGTTTCGACTGGA
TGAATTTTGAATGTTGTTCTTTTGTTCTATGGTTCTGACTCCAACCCAAA
TCAGGGGGGCGGATCTCCCAGAGCAGGGGGGCACGTTGTTCTTTCGGAAG
GAATTCACTGTAGCTGGTGCTAAGTTTCTAGGGAGAAACAGTAAGGAAAA
TACTCGCTCGCGTATGTTCTGCTCAAATGATCTCAACGCTGAACGAATGT
TTGGGGATGGATGTTATTTGATCGGAAGTGTGAGAGTTGAGGATTGGTAC
CATGCCCAGAAGCGTTTTATCTGCGAAGTGGGCATGAAACGTATACTTTG
GTTTGTGTTCGAAAGTTTGTGTATTTTTGGTAGGATTCGTAGTCGGATGA
ACGTAGTCGGATGCACAACAAAGAAGGCGATTTTCTACGAATTGATCCGT
GTTTTGGAAAGAAAATGAAGAGGAGTTCCACAGACAGGTTTGACTCGATA
GATTGTTTAAGGCTTTCAGTTGTGCGAGGGACATAAGTACTTTGCGGGTG
TCGTTGCGGCGAAGGGCTGAGAAAGGATGGACCAGAGGAAGAGCGTTTTG
CAGAGAAGAAATGAAGACGATGGGACAAGACGTTGTGGGTTCAGGAACAC
TTGCATAATCGAATTCATTCTCGGTTACTTGTTTGTCATGGAGGAGTAGG
ATCCACGTTTTGGGTCTCATGG
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Coding sequence (CDS) from alignment at Scaffold_544:130478..133099-

>EsuBft733_3a-0001 ID=EsuBft733_3a-0001|Name=EsuBft733_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=219bp|location=Sequence derived from alignment at Scaffold_544:130478..133099- (Ectocarpus subulatus male Bft15b)
ATGAGTGATCTGAATTGCGTGACGGATAGGTGTGGTGACGCACTCTTCGG
CTGCTCGGCCTCGAGTGGTCTCTGCCCTTCCCTCTTCCCTCTAATACAAG
ACTTTCCCATCTCGGCCCTCACTGGCCGAGCTGCCTTTCTCCACAAACCT
ACAAGCTTCGGCCTACCCGGTTTATCCAACACGCTAGCGTCAACGACTTT
GTCGAGGGTGACTGGGTAG
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