EsuBft733_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft733_2a-0001
Unique NameEsuBft733_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_544contigScaffold_544:136259..137169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G715
ProteomeIdEsuBft733_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length69
Hectar predicted targeting categoryother localisation
Evalue1.41e-43
EggNOG OGs2CYGC@1|root,2S47N@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionSulfotransferase family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft733_2aEsuBft733_2aEctocarpus subulatus male Bft15bgeneScaffold_544 136259..137169 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft733_2a-0001-exonEsuBft733_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_544 136259..136317 +
EsuBft733_2a-0001-exonagat-exon-57184Ectocarpus subulatus male Bft15bexonScaffold_544 136533..137169 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft733_2a-0001-cdsEsuBft733_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_544 136259..136317 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft733_2a-0001EsuBft733_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_544 136259..137169 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft733_2a-0001 ID=EsuBft733_2a-0001|Name=EsuBft733_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=696bp|location=Sequence derived from alignment at Scaffold_544:136259..137169+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGTCAATTGGCGAGTTTCCCTGGAAGTCAAACTCAACCAACTTCA
ATATAAGTGCCCGATACCACGGCTTGTGAGCGCATACTTTTACTGCAAGC
AGAACGGTTGGGACGAGCTCTGCGCGTCCATGGTCTTGAAGGCGGGCAAT
ACAGACCTGCATACGTTCGCCAAACACTGGGGCAACTATGGCTTGCGTCA
ATTCTCCCTCGCGTTTGTCGGAGCAGAAGACGTATTTGCTGCAGAGCAGG
AACGTGGAATAGATGGACGACCGGTGATGTTTCCCGGATGGTATAGAGTC
AAGGAGTACTTCGAAAATCAATTTGACGTGGAACAAGAACGGGCCCTCAT
GCAGGAAACCGGAGCATCAAATGACCTTGCAATGTCCTACTTACTCCAGC
CTGTGGAGGACCTGCTGAGCAGAAACTACTCCGCTGTGGGAATACTAGAG
AAGTGGGAAACGAGCATGACACTCTTCAATAAAGCTCTCAAGGTGCCGAG
TTTCAACTGGCAAACGGCTTCTCGCAACCTCGGGCGAAAAAATGTTGACA
AGAGACTCCATGACGAGGAGGCCCATGCGCTACGCGCTGCGTGGGATGAC
CCGGTCCTCGCAAAAACGTTGTGGCTTGACATTTTCCTGTATGACCACGC
TGTCGCCGTCCACAACAAGCAGGTCGAAGAACATGGCATTGTGTAG
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protein sequence of EsuBft733_2a-0001

>EsuBft733_2 ID=EsuBft733_2|Name=EsuBft733_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=231bp
MEVNWRVSLEVKLNQLQYKCPIPRLVSAYFYCKQNGWDELCASMVLKAGN
TDLHTFAKHWGNYGLRQFSLAFVGAEDVFAAEQERGIDGRPVMFPGWYRV
KEYFENQFDVEQERALMQETGASNDLAMSYLLQPVEDLLSRNYSAVGILE
KWETSMTLFNKALKVPSFNWQTASRNLGRKNVDKRLHDEEAHALRAAWDD
PVLAKTLWLDIFLYDHAVAVHNKQVEEHGIV
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mRNA from alignment at Scaffold_544:136259..137169+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft733_2a-0001 ID=EsuBft733_2a-0001|Name=EsuBft733_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=911bp|location=Sequence derived from alignment at Scaffold_544:136259..137169+ (Ectocarpus subulatus male Bft15b)
ATGGAAGTCAATTGGCGAGTTTCCCTGGAAGTCAAACTCAACCAACTTCA
ATATAAGTGGTATTTCTCGACTTCCAAGGGAGAATAATTGTAGCTCTTTA
CAAGGAAGTACCCGCAATTTGTCAACTATTGTAGTGGATCTCCAGCGAAC
CTCAACGAATCAATAAGACAACGAAAGCAAAATAACAAATCTGTTAGATG
CCATGGTGAAGACTACCACCCGTACTTGCTGTCACCTGTTCTGTGCCTCA
AACGCCTCGTCGTGCTTTTTGCAGCCCGATACCACGGCTTGTGAGCGCAT
ACTTTTACTGCAAGCAGAACGGTTGGGACGAGCTCTGCGCGTCCATGGTC
TTGAAGGCGGGCAATACAGACCTGCATACGTTCGCCAAACACTGGGGCAA
CTATGGCTTGCGTCAATTCTCCCTCGCGTTTGTCGGAGCAGAAGACGTAT
TTGCTGCAGAGCAGGAACGTGGAATAGATGGACGACCGGTGATGTTTCCC
GGATGGTATAGAGTCAAGGAGTACTTCGAAAATCAATTTGACGTGGAACA
AGAACGGGCCCTCATGCAGGAAACCGGAGCATCAAATGACCTTGCAATGT
CCTACTTACTCCAGCCTGTGGAGGACCTGCTGAGCAGAAACTACTCCGCT
GTGGGAATACTAGAGAAGTGGGAAACGAGCATGACACTCTTCAATAAAGC
TCTCAAGGTGCCGAGTTTCAACTGGCAAACGGCTTCTCGCAACCTCGGGC
GAAAAAATGTTGACAAGAGACTCCATGACGAGGAGGCCCATGCGCTACGC
GCTGCGTGGGATGACCCGGTCCTCGCAAAAACGTTGTGGCTTGACATTTT
CCTGTATGACCACGCTGTCGCCGTCCACAACAAGCAGGTCGAAGAACATG
GCATTGTGTAG
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Coding sequence (CDS) from alignment at Scaffold_544:136259..137169+

>EsuBft733_2a-0001 ID=EsuBft733_2a-0001|Name=EsuBft733_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=696bp|location=Sequence derived from alignment at Scaffold_544:136259..137169+ (Ectocarpus subulatus male Bft15b)
ATGGAAGTCAATTGGCGAGTTTCCCTGGAAGTCAAACTCAACCAACTTCA
ATATAAGTGCCCGATACCACGGCTTGTGAGCGCATACTTTTACTGCAAGC
AGAACGGTTGGGACGAGCTCTGCGCGTCCATGGTCTTGAAGGCGGGCAAT
ACAGACCTGCATACGTTCGCCAAACACTGGGGCAACTATGGCTTGCGTCA
ATTCTCCCTCGCGTTTGTCGGAGCAGAAGACGTATTTGCTGCAGAGCAGG
AACGTGGAATAGATGGACGACCGGTGATGTTTCCCGGATGGTATAGAGTC
AAGGAGTACTTCGAAAATCAATTTGACGTGGAACAAGAACGGGCCCTCAT
GCAGGAAACCGGAGCATCAAATGACCTTGCAATGTCCTACTTACTCCAGC
CTGTGGAGGACCTGCTGAGCAGAAACTACTCCGCTGTGGGAATACTAGAG
AAGTGGGAAACGAGCATGACACTCTTCAATAAAGCTCTCAAGGTGCCGAG
TTTCAACTGGCAAACGGCTTCTCGCAACCTCGGGCGAAAAAATGTTGACA
AGAGACTCCATGACGAGGAGGCCCATGCGCTACGCGCTGCGTGGGATGAC
CCGGTCCTCGCAAAAACGTTGTGGCTTGACATTTTCCTGTATGACCACGC
TGTCGCCGTCCACAACAAGCAGGTCGAAGAACATGGCATTGTGTAG
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