EsuBft730_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft730_5a-0001
Unique NameEsuBft730_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_472contigScaffold_472:238092..239041 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog946362.XP_004995034.1
ProteomeIdEsuBft730_5
Protein domainsIPR013103
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Notecopia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon1
Max annot lvl33154|Opisthokonta
Length950
Hectar predicted targeting categoryother localisation
Evalue3.81e-27
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta
Date last modified2016-06-14
Date creation2016-06-14
DescriptionEncoded by
COG categoryJ
Cross References
External references for this mRNA
DatabaseAccession
GO0005515
EC3.1
GO0003824
GO0097159
GO1901363
GO0004518
GO0090304
GO0016740
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft730_5aEsuBft730_5aEctocarpus subulatus male Bft15bgeneScaffold_472 238092..239041 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft730_5a-0001-exonEsuBft730_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_472 238092..239041 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft730_5a-0001-exonagat-three_prime_utr-20813Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_472 238092..238124 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft730_5a-0001-cdsEsuBft730_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_472 238125..239012 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft730_5a-0001-exonagat-five_prime_utr-13356Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_472 239013..239041 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft730_5a-0001EsuBft730_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_472 238125..239012 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft730_5a-0001 ID=EsuBft730_5a-0001|Name=EsuBft730_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=950bp|location=Sequence derived from alignment at Scaffold_472:238092..239041- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGGCCGCACGCGAAAGCAGACCCGGGAGATGCAAGGTGCCGGGGAGATG
CCGGAGCCCGGACAAACACCGGACCCGGAAGAGGCACTGCTGGCGACCAT
CCTGGAAACTAGCGGGACGGGGATTGTTGAGGACTACATCTGCAACTCGC
TTGTGAAGGAGCAGTGGGACGAGGAGCAGACACGCCGTATGGAGGAGATG
TACAGGCGCGAGATGCAGGAGGTGTTGGGCCCGAAACAGCAGGCGTTCGG
GGCCGAGGTCGACGCCAGTGGGTCTTCGCAACCACTCCCAGACCCACAGC
GAAGTATGACCTCGCCAATCGGGCAGAAGCCGAGTGATGTGGAAGCAGTA
CCGATGACGTACAAGGATGTGATGTGTTCCAAGTACAAGGTTTTCTGGCA
GGCGGCTATGAAGAAAGAGATAGATGGGCACGGCAAGACTGGAACCTTAG
CCAAGGTCAAGGAGCTGCCCGAGGAGCGGAAGGCCATAGGTTCAAAGTGG
TTGTTCTCTTGGAAGAAGAATGAGAAGGGCCTGATAGTCGACTTCAAGGC
CCGTATGGTTGCGCGGGGTTTCTCTCGAATTCCCGGCATCCACTTCCACC
ACTCATCCTCAGCGTGCCCGTCTGCAGCGTCTATCAAGACGGTGATTGCC
GTAGCCACTGAAAAGGGCAAGAAACTCGCTCACTGGGATGTGAAGCAAGC
GTACATCCACGCTAAGCTAAAAGAAGAAATATACCTCAGGTTCCCGGAAG
GCTGTGGTAGCATGTCCGGCAAGGTGGTCAAGGTTGAGCGTGCCCTGTAT
GGCCTCAAGCAGAGGGGCCGTGAGTGGGGGGTTGACGCTGCCGATGCCGT
CATCGAGAATGGATACGAGCAGTGCAGGGTTGACCCGTGGGTCTTCCGGA
AGGTGGTTGATAGATAGGTCGTAGGTCTCATCGTGATCTACGTCGACGAC
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protein sequence of EsuBft730_5a-0001

>EsuBft730_5 ID=EsuBft730_5|Name=EsuBft730_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=295bp
MQGAGEMPEPGQTPDPEEALLATILETSGTGIVEDYICNSLVKEQWDEEQ
TRRMEEMYRREMQEVLGPKQQAFGAEVDASGSSQPLPDPQRSMTSPIGQK
PSDVEAVPMTYKDVMCSKYKVFWQAAMKKEIDGHGKTGTLAKVKELPEER
KAIGSKWLFSWKKNEKGLIVDFKARMVARGFSRIPGIHFHHSSSACPSAA
SIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVV
KVERALYGLKQRGREWGVDAADAVIENGYEQCRVDPWVFRKVVDR
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mRNA from alignment at Scaffold_472:238092..239041-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft730_5a-0001 ID=EsuBft730_5a-0001|Name=EsuBft730_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=950bp|location=Sequence derived from alignment at Scaffold_472:238092..239041- (Ectocarpus subulatus male Bft15b)
GTGGCCGCACGCGAAAGCAGACCCGGGAGATGCAAGGTGCCGGGGAGATG
CCGGAGCCCGGACAAACACCGGACCCGGAAGAGGCACTGCTGGCGACCAT
CCTGGAAACTAGCGGGACGGGGATTGTTGAGGACTACATCTGCAACTCGC
TTGTGAAGGAGCAGTGGGACGAGGAGCAGACACGCCGTATGGAGGAGATG
TACAGGCGCGAGATGCAGGAGGTGTTGGGCCCGAAACAGCAGGCGTTCGG
GGCCGAGGTCGACGCCAGTGGGTCTTCGCAACCACTCCCAGACCCACAGC
GAAGTATGACCTCGCCAATCGGGCAGAAGCCGAGTGATGTGGAAGCAGTA
CCGATGACGTACAAGGATGTGATGTGTTCCAAGTACAAGGTTTTCTGGCA
GGCGGCTATGAAGAAAGAGATAGATGGGCACGGCAAGACTGGAACCTTAG
CCAAGGTCAAGGAGCTGCCCGAGGAGCGGAAGGCCATAGGTTCAAAGTGG
TTGTTCTCTTGGAAGAAGAATGAGAAGGGCCTGATAGTCGACTTCAAGGC
CCGTATGGTTGCGCGGGGTTTCTCTCGAATTCCCGGCATCCACTTCCACC
ACTCATCCTCAGCGTGCCCGTCTGCAGCGTCTATCAAGACGGTGATTGCC
GTAGCCACTGAAAAGGGCAAGAAACTCGCTCACTGGGATGTGAAGCAAGC
GTACATCCACGCTAAGCTAAAAGAAGAAATATACCTCAGGTTCCCGGAAG
GCTGTGGTAGCATGTCCGGCAAGGTGGTCAAGGTTGAGCGTGCCCTGTAT
GGCCTCAAGCAGAGGGGCCGTGAGTGGGGGGTTGACGCTGCCGATGCCGT
CATCGAGAATGGATACGAGCAGTGCAGGGTTGACCCGTGGGTCTTCCGGA
AGGTGGTTGATAGATAGGTCGTAGGTCTCATCGTGATCTACGTCGACGAC
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Coding sequence (CDS) from alignment at Scaffold_472:238092..239041-

>EsuBft730_5a-0001 ID=EsuBft730_5a-0001|Name=EsuBft730_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=888bp|location=Sequence derived from alignment at Scaffold_472:238092..239041- (Ectocarpus subulatus male Bft15b)
ATGCAAGGTGCCGGGGAGATGCCGGAGCCCGGACAAACACCGGACCCGGA
AGAGGCACTGCTGGCGACCATCCTGGAAACTAGCGGGACGGGGATTGTTG
AGGACTACATCTGCAACTCGCTTGTGAAGGAGCAGTGGGACGAGGAGCAG
ACACGCCGTATGGAGGAGATGTACAGGCGCGAGATGCAGGAGGTGTTGGG
CCCGAAACAGCAGGCGTTCGGGGCCGAGGTCGACGCCAGTGGGTCTTCGC
AACCACTCCCAGACCCACAGCGAAGTATGACCTCGCCAATCGGGCAGAAG
CCGAGTGATGTGGAAGCAGTACCGATGACGTACAAGGATGTGATGTGTTC
CAAGTACAAGGTTTTCTGGCAGGCGGCTATGAAGAAAGAGATAGATGGGC
ACGGCAAGACTGGAACCTTAGCCAAGGTCAAGGAGCTGCCCGAGGAGCGG
AAGGCCATAGGTTCAAAGTGGTTGTTCTCTTGGAAGAAGAATGAGAAGGG
CCTGATAGTCGACTTCAAGGCCCGTATGGTTGCGCGGGGTTTCTCTCGAA
TTCCCGGCATCCACTTCCACCACTCATCCTCAGCGTGCCCGTCTGCAGCG
TCTATCAAGACGGTGATTGCCGTAGCCACTGAAAAGGGCAAGAAACTCGC
TCACTGGGATGTGAAGCAAGCGTACATCCACGCTAAGCTAAAAGAAGAAA
TATACCTCAGGTTCCCGGAAGGCTGTGGTAGCATGTCCGGCAAGGTGGTC
AAGGTTGAGCGTGCCCTGTATGGCCTCAAGCAGAGGGGCCGTGAGTGGGG
GGTTGACGCTGCCGATGCCGTCATCGAGAATGGATACGAGCAGTGCAGGG
TTGACCCGTGGGTCTTCCGGAAGGTGGTTGATAGATAG
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