EsuBft730_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft730_12a-0001
Unique NameEsuBft730_12a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_472contigScaffold_472:143766..147916 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft730_12
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length276
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft730_12aEsuBft730_12aEctocarpus subulatus male Bft15bgeneScaffold_472 143766..147916 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft730_12a-0001EsuBft730_12Ectocarpus subulatus male Bft15bpolypeptideScaffold_472 145081..147913 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft730_12a-0001-exonagat-exon-44372Ectocarpus subulatus male Bft15bexonScaffold_472 143766..144817 -
EsuBft730_12a-0001-exonagat-exon-44371Ectocarpus subulatus male Bft15bexonScaffold_472 144898..145404 -
EsuBft730_12a-0001-exonagat-exon-44373Ectocarpus subulatus male Bft15bexonScaffold_472 145949..146795 -
EsuBft730_12a-0001-exonEsuBft730_12a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_472 147235..147452 -
EsuBft730_12a-0001-exonagat-exon-44374Ectocarpus subulatus male Bft15bexonScaffold_472 147776..147916 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft730_12a-0001-exonagat-three_prime_utr-20805Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_472 143766..144817 -
EsuBft730_12a-0001-exonagat-three_prime_utr-20806Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_472 144898..145080 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft730_12a-0001-cdsEsuBft730_12a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_472 145081..145404 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft730_12a-0001-exonagat-five_prime_utr-13351Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_472 147914..147916 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft730_12a-0001 ID=EsuBft730_12a-0001|Name=EsuBft730_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2765bp|location=Sequence derived from alignment at Scaffold_472:143766..147916- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AAGATGTCCATGTACGAGCTGGACCGCTACTTCGCGGACCCGACAACAGC
ACGCTCAGCCCAGAACTTGGCGAAAGGAGCAAGGGAAGTGCTAGGCGAGG
TGGACCCCTTCGCTCCGGGCGAGCGACCCAACCAGATACAGGCGTTCCGC
TCGTATCAACAAGGTATGAGCACCATTATCAGCACCTGTCCGGGGTGCGA
CCAGAATTATGGATCGAGAAGAAGCTTGATCGTCGCAGCCCGGAGGATGC
ATGACAGCGGTCCCAAAAGTGAGCGTTCAATGGCCGTAGCGTACGTCCTG
GCGAGCGAGAATCTCGAGAGCTTCCTGGAACTGATGCGTCGCTTGGACGA
GCCATTGAGACAATTCACAGGGCCGGAGCAGGGCTCACCGCACGACAGAG
CCAAAATAGCGGGCGGCACCCCTCCTTCTGTCCACGAGGACCCTGCCGGC
GTCGTGGCACGACCTGAGTGTCGCCCTGCGAAGTGGGGAGTGGCGACCAA
GGTGTCGAGCGCCGTCGCTGAGGGCAGGGGCTCATCCAGGGACAATCCGC
AAGAGCCGCGCGCGAACGTATGGCCATCGCTGGAAAGGGACGGAGGGTCT
TCATACCCCACCCGACCGAGCTCCCCACGGATGCGCGCATTTCACGAGCG
GCTGCAACGCGGCACGATTTGGAGCGACGAGTGTTCTACTTCTCGAGGGG
GAAAATCGCCGCCGCCGCCGCCGGCATCCTTGTCCGCGCAGGCGACAGAC
GCGTCGCCCGTGATTGAGGACTACTTGCGTCGCTGCAGCCCGCAGCTGGC
CGGGGGGGGCGGTGTTACCTTTCGGCGAGCAATCGCCAGTGAGCAAAAGC
CGTCGTCATCGGAGGAGTCCCCGTCCGAGATAGAGGGCGTGAGCGCCTGT
TCCGGGCGTATTTCTCCGGTTGGAAGGGAGCAGCGGCCAGACCGCCGGCC
GGCGACCGCGCGCTTCTCCTCCCGCGACCACTCCGCTTCGAGCCGCGGCA
ATGGCGTTGCGACGCCGGGCCGTTATTCGCCGGGCCGTTGGACCCCTCCG
GGGAGCTCCGGCGACCAGGACTCCGACCCGTGGGCACAAGCCTGGTTCGC
AGAGCACGGCAACGAAAACTGGGTCAGAGTGTTGGCGGAGGAGGAGCGCG
GCACTCGTTTCCCCCCCAATCGGATGGATATAAGCGGCACCTTCGGCACG
GACATGGCCGTCACGTCTCCGGCCCAACTTTTCGACCGGTCCGGCGGCGA
CTTTGCCTTCATCAGTCCAAGCAACGGGAGCAGCAGCAGCCGCCGCGCCC
CCGGCTCGCCCTCCCCAAGAGGACCGGACTGGTGTCTCCACGACTACGAC
ACCGCTACAGGTGGCGGCTTTCGTAGCCGACTCGTCGACCAGGAGGACGA
CGGTGCCTGGAGCGACGGGTCGGAGGAAGTGTTTCCAGAACCGGACCCGT
CCGACCTTGCGGACGGCGGCCTGCCGTGCTTGTCCCGCCGCCCCCTCGGC
GACTCGACCGCCGCTGCCCCCCAAGGATGATATCGTTGTCATCGCGGAAC
GTTATGTGCGAGAGACCGGAGTGTCTGTTTTGTGCCGTGCGTTCCAGGGT
GATGATGCTTGCGAAACGTCGTCATCGCGGAAGGTTGTATCCAGAATCTA
GAAATGCTTGTTTCGTGTCGTGAGGTTCCAGATTGTGACGCTTGCGAAAC
GTCATCACGGAAGGCTGGAAAACCAATAACTGGATAATTTTGTGCTAGGT
TTGCTTGTGTCGTTTGCACTCCTCTTCCATGGAAGCCTCGCAATTGTCCC
AAGACTACCGGATAGTGGGCGAGGTGAAACCTCGCACCACTACCGGCGAC
CACAACGACTGAAACGAACCGGCGAGGTGAAACGTTACAAAGAGGAGAAA
GGGGGGTGACGCCTGCTTACCCTGTGTTGTTTGAGTTGCCCTTGGCGTGT
GGTTTATTCCGAATGCCTTCCTTATGTGGATCTTCGTCTGTCTACGTAAC
ACCCTAGCACCGAGCGGGTGGGCAAGGTGCCGGACAGACCGCGCAGGTGC
TAAGATCCCGCCCAGAGTTGATGTACGCCTCGCAACGAAACGGTTGAAGA
CGAAGACTACGTACTGTGGTAGGTGTTGGAAATATCTGAGTAAAAGCGCG
GCTCCGGGGCGCTTGCCAAACGTTCCGCGGCGGCGATCGAGGCAGACTTG
GGTAGTGGCAAGAAGAGTTGGATTGATGCGAGGTTGTTCGGTGAGGAATC
TTTTGTCGGACTCTTGGTGATGTGGAAAGACCCCCCCGGCCTCGACGCAC
AGTGCAATCGGCGCGTCTTGCGTGTTGTGGTTGGCCTTACTTTGATGCTT
GCATGCGGTGACAACCGCTGTGAATTGTGGCTGTGAGTGTTGTTGCTTCC
CAAAGAACGACAACGGGTGTGTACAACTGTGGGTGTGCCGTGTGTTGTAC
TTGTTCGGTGGATTTTACACTAGCTGTTTGTGGCAGGCCTGCCAAGCAGC
GGAACCAACTTTCATGTCACGAACAGTAACTGCCTCGTTTGATAAGCTAG
CTATTGTTTGGTTGGATACCGCTTTCCCGATACACTCTTGCAGGAGACAA
AGCGGAATAGAGCAGAGGAGCGGCGCTCAGTAAGTATCTAGATGTTTGCA
GGATTATGTAGTTGTACTTTCGCCTTACCCCCAAAATGGGTTGATCTTAC
AAGCAGGGTGAAGTCTGGGAATTGATCCGACGCAAGGGATGGATGCTTGA
TTGCTACGTCGAGAT
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protein sequence of EsuBft730_12a-0001

>EsuBft730_12 ID=EsuBft730_12|Name=EsuBft730_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=508bp
MSMYELDRYFADPTTARSAQNLAKGAREVLGEVDPFAPGERPNQIQAFRS
YQQGMSTIISTCPGCDQNYGSRRSLIVAARRMHDSGPKSERSMAVAYVLA
SENLESFLELMRRLDEPLRQFTGPEQGSPHDRAKIAGGTPPSVHEDPAGV
VARPECRPAKWGVATKVSSAVAEGRGSSRDNPQEPRANVWPSLERDGGSS
YPTRPSSPRMRAFHERLQRGTIWSDECSTSRGGKSPPPPPASLSAQATDA
SPVIEDYLRRCSPQLAGGGGVTFRRAIASEQKPSSSEESPSEIEGVSACS
GRISPVGREQRPDRRPATARFSSRDHSASSRGNGVATPGRYSPGRWTPPG
SSGDQDSDPWAQAWFAEHGNENWVRVLAEEERGTRFPPNRMDISGTFGTD
MAVTSPAQLFDRSGGDFAFISPSNGSSSSRRAPGSPSPRGPDWCLHDYDT
ATGGGFRSRLVDQEDDGAWSDGSEEVFPEPDPSDLADGGLPCLSRRPLGD
STAAAPQG
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mRNA from alignment at Scaffold_472:143766..147916-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft730_12a-0001 ID=EsuBft730_12a-0001|Name=EsuBft730_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4151bp|location=Sequence derived from alignment at Scaffold_472:143766..147916- (Ectocarpus subulatus male Bft15b)
AAGATGTCCATGTACGAGCTGGACCGCTACTTCGCGGACCCGACAACAGC ACGCTCAGCCCAGAACTTGGCGAAAGGAGCAAGGGAAGTGCTAGGCGAGG TGGACCCCTTCGCTCCGGGCGAGCGACCCAACCAGATACAGGTAGAATAG CCCAATCGAGATGTTCAAAATAGGTCGGACGGTCTACACATGTATTTGTC GACACTGTGGCGCGTTTGTAGGTTGTACGTGCGCCTGCTGCCCCGTCCTC TGCGTGTACCTTGACCGCTGTTCGTCGAGCATCGTGCGTTAATGGCCAAG ATTTGGTTCAGTACAACAGCTTTTCTTTTGTGTACGACAACGGAATCCTT GAACGCCGCCGCCTCCCCAGCTGCGAATACCATATAGCGACCAACAGTGG TGCCTGCCCAACGCGTACTTCTCCTGGTTTGGATCGTTATTGCTATGAAC ACCGTTACGAAAAGGCGTTCCGCTCGTATCAACAAGGTATGAGCACCATT ATCAGCACCTGTCCGGGGTGCGACCAGAATTATGGATCGAGAAGAAGCTT GATCGTCGCAGCCCGGAGGATGCATGACAGCGGTCCCAAAAGTGAGCGTT CAATGGCCGTAGCGTACGTCCTGGCGAGCGAGAATCTCGAGAGCTTCCTG GAACTGATGCGTCGCTTGGACGAGCCATTGAGGTATGAACAAACGGTACA AGTTTCGTCGCTGTCTATTCAGTCGTTTCACCATTGTGGTCTTCCCTCCA TCCCGGACTGAGCCTTTCCAGCCAACAGGCGCCAAGACCTTGTCTTTCCG GCAAGTAATGTAGTTTTGAATGGTTGAGTAGGTTCCACGAAAGTTTTTAT CCGACATACGCCGGACCTGACGCTGCTGTCTCACGGCCATCATTAAGGGC CAACGACACAGCGGTACAATAACGTGGTAGGCTTTGGCATAACCACACCA TGTCACTGGCAAAAAAACAGCACTAGTGCGATAGACCAAGAGCGGTCGAG AGATATCGACGGATCACCTTGTTGAAGAAGCTAACCGGGAACGTGCGTCC ATCATACCCGCCAAATGGTGTCAGTCTGTTCAAACGCGACTGCTGAGGCA TTTCGTTCTCTCTCACTGCAGACAATTCACAGGGCCGGAGCAGGGCTCAC CGCACGACAGAGCCAAAATAGCGGGCGGCACCCCTCCTTCTGTCCACGAG GACCCTGCCGGCGTCGTGGCACGACCTGAGTGTCGCCCTGCGAAGTGGGG AGTGGCGACCAAGGTGTCGAGCGCCGTCGCTGAGGGCAGGGGCTCATCCA GGGACAATCCGCAAGAGCCGCGCGCGAACGTATGGCCATCGCTGGAAAGG GACGGAGGGTCTTCATACCCCACCCGACCGAGCTCCCCACGGATGCGCGC ATTTCACGAGCGGCTGCAACGCGGCACGATTTGGAGCGACGAGTGTTCTA CTTCTCGAGGGGGAAAATCGCCGCCGCCGCCGCCGGCATCCTTGTCCGCG CAGGCGACAGACGCGTCGCCCGTGATTGAGGACTACTTGCGTCGCTGCAG CCCGCAGCTGGCCGGGGGGGGCGGTGTTACCTTTCGGCGAGCAATCGCCA GTGAGCAAAAGCCGTCGTCATCGGAGGAGTCCCCGTCCGAGATAGAGGGC GTGAGCGCCTGTTCCGGGCGTATTTCTCCGGTTGGAAGGGAGCAGCGGCC AGACCGCCGGCCGGCGACCGCGCGCTTCTCCTCCCGCGACCACTCCGCTT CGAGCCGCGGCAATGGCGTTGCGACGCCGGGCCGTTATTCGCCGGGCCGT TGGACCCCTCCGGGGAGCTCCGGCGACCAGGACTCCGACCCGTGGGCACA AGCCTGGTTCGCAGAGCACGGCAACGAAAACTGGGTCAGAGTGTTGGCGG AGGAGGAGCGCGGCACTCGTTTCCCCCCCAATCGGATGGATATAAGCGGC ACCTTCGGCACGGACATGGTGAGATGTCGCGGAATTGTCGTCGCTGATCG GCAGCGTTGACAAGATGACGAGGTGCTGCAAAGGGTTGAAAAGCCGCTGT TTTCTTCGGCAGCAGGCCGCGCCGTTTTAGTGCTGCTTGTGTTCTTGCTG AGGGCTTAAGCGTGCACAATGTTCGTGGGTGATGCGGGCGGCCACCCGTA TTGACGCGTTTAGCCGGCGACGAAAGATCGATTCCGCACGACGAGTTTCC TGCCTCCAACCATGCTGTCGCCACCAAAGCCCTCATATCGGGCCTGTATA CAGTTGTACCCAAGGCTTACCCTTTGCCCCTCTGCCACTTGCCGCCGCTG GTTCCTTGAACAAGAGGATTCCGGTGTCGGAGCGCTTCAACAACGTGGAA GGCATGCAGGAACGCTGTGGACCGGTTGGCGAAGTGGAACAGAGCGGTAT AAACCCCCGCTCTCCGCCTCCTCTATCGGCGTGTTTTCTTCGTTGCCCCA CGAAACGCTCGGGTCTTACGACCTACAATAACCCTACCCCTTCCCACCCG CTCGCTCTCCAGGCCGTCACGTCTCCGGCCCAACTTTTCGACCGGTCCGG CGGCGACTTTGCCTTCATCAGTCCAAGCAACGGGAGCAGCAGCAGCCGCC GCGCCCCCGGCTCGCCCTCCCCAAGAGGACCGGACTGGTGTCTCCACGAC TACGACACCGCTACAGGTGGCGGCTTTCGTAGCCGACTCGTCGACCAGGA GGACGACGGTGCCTGGAGCGACGGGTCGGAGGAAGTGTTTCCAGAACCGG ACCCGTCCGACCTTGCGGACGGCGGCCTGCCGTGCTTGTCCCGCCGCCCC CTCGGCGACTCGACCGCCGCTGCCCCCCAAGGATGATATCGTTGTCATCG CGGAACGTTATGTGCGAGAGACCGGAGTGTCTGTTTTGTGCCGTGCGTTC CAGGGTGATGATGCTTGCGAAACGTCGTCATCGCGGAAGGTTGTATCCAG AATCTAGAAATGCTTGTTTCGTGTCGTGAGGTTCCAGATTGTGACGCTTG CGAAACGTCATCACGGAAGGTTGTATTCAGAATCTAGAAATGTTTGTTTC GTGTCGTGAGGTTTCAGATTGTGACGCTTGCGAAACGTCATCACGGAAGG CTGGAAAACCAATAACTGGATAATTTTGTGCTAGGTTTGCTTGTGTCGTT TGCACTCCTCTTCCATGGAAGCCTCGCAATTGTCCCAAGACTACCGGATA GTGGGCGAGGTGAAACCTCGCACCACTACCGGCGACCACAACGACTGAAA CGAACCGGCGAGGTGAAACGTTACAAAGAGGAGAAAGGGGGGTGACGCCT GCTTACCCTGTGTTGTTTGAGTTGCCCTTGGCGTGTGGTTTATTCCGAAT GCCTTCCTTATGTGGATCTTCGTCTGTCTACGTAACACCCTAGCACCGAG CGGGTGGGCAAGGTGCCGGACAGACCGCGCAGGTGCTAAGATCCCGCCCA GAGTTGATGTACGCCTCGCAACGAAACGGTTGAAGACGAAGACTACGTAC TGTGGTAGGTGTTGGAAATATCTGAGTAAAAGCGCGGCTCCGGGGCGCTT GCCAAACGTTCCGCGGCGGCGATCGAGGCAGACTTGGGTAGTGGCAAGAA GAGTTGGATTGATGCGAGGTTGTTCGGTGAGGAATCTTTTGTCGGACTCT TGGTGATGTGGAAAGACCCCCCCGGCCTCGACGCACAGTGCAATCGGCGC GTCTTGCGTGTTGTGGTTGGCCTTACTTTGATGCTTGCATGCGGTGACAA CCGCTGTGAATTGTGGCTGTGAGTGTTGTTGCTTCCCAAAGAACGACAAC GGGTGTGTACAACTGTGGGTGTGCCGTGTGTTGTACTTGTTCGGTGGATT TTACACTAGCTGTTTGTGGCAGGCCTGCCAAGCAGCGGAACCAACTTTCA TGTCACGAACAGTAACTGCCTCGTTTGATAAGCTAGCTATTGTTTGGTTG GATACCGCTTTCCCGATACACTCTTGCAGGAGACAAAGCGGAATAGAGCA GAGGAGCGGCGCTCAGTAAGTATCTAGATGTTTGCAGGATTATGTAGTTG TACTTTCGCCTTACCCCCAAAATGGGTTGATCTTACAAGCAGGGTGAAGT CTGGGAATTGATCCGACGCAAGGGATGGATGCTTGATTGCTACGTCGAGA T
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Coding sequence (CDS) from alignment at Scaffold_472:143766..147916-

>EsuBft730_12a-0001 ID=EsuBft730_12a-0001|Name=EsuBft730_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1527bp|location=Sequence derived from alignment at Scaffold_472:143766..147916- (Ectocarpus subulatus male Bft15b)
ATGTCCATGTACGAGCTGGACCGCTACTTCGCGGACCCGACAACAGCACG
CTCAGCCCAGAACTTGGCGAAAGGAGCAAGGGAAGTGCTAGGCGAGGTGG
ACCCCTTCGCTCCGGGCGAGCGACCCAACCAGATACAGGCGTTCCGCTCG
TATCAACAAGGTATGAGCACCATTATCAGCACCTGTCCGGGGTGCGACCA
GAATTATGGATCGAGAAGAAGCTTGATCGTCGCAGCCCGGAGGATGCATG
ACAGCGGTCCCAAAAGTGAGCGTTCAATGGCCGTAGCGTACGTCCTGGCG
AGCGAGAATCTCGAGAGCTTCCTGGAACTGATGCGTCGCTTGGACGAGCC
ATTGAGACAATTCACAGGGCCGGAGCAGGGCTCACCGCACGACAGAGCCA
AAATAGCGGGCGGCACCCCTCCTTCTGTCCACGAGGACCCTGCCGGCGTC
GTGGCACGACCTGAGTGTCGCCCTGCGAAGTGGGGAGTGGCGACCAAGGT
GTCGAGCGCCGTCGCTGAGGGCAGGGGCTCATCCAGGGACAATCCGCAAG
AGCCGCGCGCGAACGTATGGCCATCGCTGGAAAGGGACGGAGGGTCTTCA
TACCCCACCCGACCGAGCTCCCCACGGATGCGCGCATTTCACGAGCGGCT
GCAACGCGGCACGATTTGGAGCGACGAGTGTTCTACTTCTCGAGGGGGAA
AATCGCCGCCGCCGCCGCCGGCATCCTTGTCCGCGCAGGCGACAGACGCG
TCGCCCGTGATTGAGGACTACTTGCGTCGCTGCAGCCCGCAGCTGGCCGG
GGGGGGCGGTGTTACCTTTCGGCGAGCAATCGCCAGTGAGCAAAAGCCGT
CGTCATCGGAGGAGTCCCCGTCCGAGATAGAGGGCGTGAGCGCCTGTTCC
GGGCGTATTTCTCCGGTTGGAAGGGAGCAGCGGCCAGACCGCCGGCCGGC
GACCGCGCGCTTCTCCTCCCGCGACCACTCCGCTTCGAGCCGCGGCAATG
GCGTTGCGACGCCGGGCCGTTATTCGCCGGGCCGTTGGACCCCTCCGGGG
AGCTCCGGCGACCAGGACTCCGACCCGTGGGCACAAGCCTGGTTCGCAGA
GCACGGCAACGAAAACTGGGTCAGAGTGTTGGCGGAGGAGGAGCGCGGCA
CTCGTTTCCCCCCCAATCGGATGGATATAAGCGGCACCTTCGGCACGGAC
ATGGCCGTCACGTCTCCGGCCCAACTTTTCGACCGGTCCGGCGGCGACTT
TGCCTTCATCAGTCCAAGCAACGGGAGCAGCAGCAGCCGCCGCGCCCCCG
GCTCGCCCTCCCCAAGAGGACCGGACTGGTGTCTCCACGACTACGACACC
GCTACAGGTGGCGGCTTTCGTAGCCGACTCGTCGACCAGGAGGACGACGG
TGCCTGGAGCGACGGGTCGGAGGAAGTGTTTCCAGAACCGGACCCGTCCG
ACCTTGCGGACGGCGGCCTGCCGTGCTTGTCCCGCCGCCCCCTCGGCGAC
TCGACCGCCGCTGCCCCCCAAGGATGA
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