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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LJR7 |
| ProteomeId | EsuBft712_4 |
| Protein domains | IPR016193 |
| Protein domains | G3DSA |
| Protein domains | IPR015517 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | deoxycytidylate deaminase os:rattus norvegicus gn:dctd pe:2 sv:1 [Automatic annotation] |
| Nb exon | 5 |
| Max annot lvl | 2759|Eukaryota |
| Length | 929 |
| Hectar predicted targeting category | other localisation |
| Evalue | 2.18e-83 |
| EggNOG OGs | COG2131@1|root,KOG3127@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Preferred name | DCTD |
| KEGG rclass | RC00074 |
| KEGG ko | ko:K01493 |
| KEGG Reaction | R01663 |
| KEGG Pathway | ko00240,ko01100,map00240,map01100 |
| KEGG Module | M00429 |
| GOs | GO:0003674,GO:0003824,GO:0004132,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006220,GO:0006221,GO:0006226,GO:0006231,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009157,GO:0009162,GO:0009165,GO:0009176,GO:0009177,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0015949,GO:0016787,GO:0016810,GO:0016814,GO:0018130,GO:0019239,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046073,GO:0046078,GO:0046385,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 |
| EC | 3.5.4.12 |
| Description | dCMP deaminase activity |
| COG category | F |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko02044 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0006220 |
| GO | 0046872 |
| GO | 0005829 |
| GO | 0046134 |
| GO | 0004132 |
| GO | 0070062 |
| EC | 3.5.4.12 |
| GO | 0006206 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft712_4a-0001 ID=EsuBft712_4a-0001|Name=EsuBft712_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=929bp|location=Sequence derived from alignment at Scaffold_548:270291..275274+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GTGTGCCTTCAACAAGTTGATGTGTTGGTCCCGTCTGGATGGTGAAAAGA
AAGCCCCAGCCCACTGCAGCTACGCCTTCTTCTCTACTTCCCTCTGCTAG
TTTCTTGCGCGGGCTGCTGGTTCTGCTGTCGGTGTCCGTCTGCTGCTCAT
CATCATCGTCATCATCTTGTGACTTGCGGATCGACGGCGGCGGTGGCAGT
GCTGGGGTCGCTGGAGGTGCGCTCTGTTCCCAAGGGCACTGCCTCCCGCA
AGCGCACGCCTGGCGGACCATGAGTGGGCGCGACAAAAAAGAAGTGCAAG
TCGTCCCCACGGCCACGGCCAGCTCCAATGCCGACACCGCCCAAGACGAG
GTGCCACGTCGGGCACCACGTGATGTACTTGGCGAGACGACCGCTGTTCG
CGATTCTATCAAGCCATCTCGAGGCGCCACCCTCCCCGTCGAGGGGAACA
GAGCAGCGAAACGCCTCCGGCATGCGCCCCTTGCGGACGCCGCGTTGCCG
ACCGAGGCAGCAGAGACCAACGCTGGGCGGGCGCGGTCGCCGAGTGGTAA
GGAGGCGGCGGAGGGAGAGGGCGTCGCGGCGGGAGGCGTCGCCGCCGCCG
CCGCCGCCGCCGCCGCCGGTAACCGGACGCAGAAGAGGATTGATTACCTG
GTGTGGGATGACTACTTCATGTCGGTCGCGTTTCTCAGCGCGATGCGGTC
GAAGGATCCGTCTACCCAGGTCGGGGCTTGGTTGCGTTGCGTGACCAGCA
TCGTAAACCAAGACAAGCGCATCGTGGGCATCGGTTACAACGGGTTCCCG
ATGGGATGCAGCGACGACGATCTGCCGTGGGCGCGCCGGGCAGACGACGA
GCTGGACACGAAGTACCCGGTGAGGCCGGTCGGCATGTTCCTCCTAGTCC
GTTGTCTGAACACGCCGGCTCTGTTCTGA back to topprotein sequence of EsuBft712_4a-0001 >EsuBft712_4 ID=EsuBft712_4|Name=EsuBft712_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=219bp
MSGRDKKEVQVVPTATASSNADTAQDEVPRRAPRDVLGETTAVRDSIKPS
RGATLPVEGNRAAKRLRHAPLADAALPTEAAETNAGRARSPSGKEAAEGE
GVAAGGVAAAAAAAAAGNRTQKRIDYLVWDDYFMSVAFLSAMRSKDPSTQ
VGAWLRCVTSIVNQDKRIVGIGYNGFPMGCSDDDLPWARRADDELDTKYP
VRPVGMFLLVRCLNTPALF back to topmRNA from alignment at Scaffold_548:270291..275274+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft712_4a-0001 ID=EsuBft712_4a-0001|Name=EsuBft712_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4984bp|location=Sequence derived from alignment at Scaffold_548:270291..275274+ (Ectocarpus subulatus male Bft15b)
GTGTGCCTTCAACAAGTTGATGTGTTGGTCCCGTCTGGATGGTGAAAAGA
AAGCCCCAGCCCACTGCAGCTACGCCTTCTTCTCTACTTCCCTCTGCTAG
TTTCTTGCGCGGGCTGCTGGTTCTGCTGTCGGTGTCCGTCTGCTGCTCAT
CATCATCGTCATCATCTTGTGACTTGCGGATCGACGGCGGCGGTGGCAGT
GCTGGGGTCGCTGGAGGTGCGCTCTGTTCCCAAGGGCACTGCCTCCCGCA
AGCGCACGCCTGGCGGACCATGAGTGGGGTGAGTGCGGACGGTTCCTCTT
CAGAGAGAAGACACAGCCCACGGCAAGACTGTCCTCGGTTCTCCCGATAC
GATACACACAGCTTGGTGTACGCAGGCCGTCACGGCACCAAAGCCGCTGT
GTCCGCATGTGCATACAGCAGCAGATGTGCGGCTTTCGCTTGCGCGGGTG
TCCCACCCGCGGCACGACATGGGTGTAGCCTACATGCCAGTGTCAAAGTG
GAGTTCTTCGTCTCGCCGCCGGATGTTCGGTTTGTAGCCTGAGCGGTAGC
AGCAGCAACAGCGTACTGAAACACGAGCTCCGTCTCGACAGCAGCAGCAA
GTCCGCAAGATTCCGCCAGCTGTTTGAATTTTTGAATTTTGTCCTCTGGA
CGTATATACAGGAGTACTATACCGAAGGTTGCATAAGATATCACACCCCC
TGGACTGATTTTCGAAGCTCGATTTCTCGGCAGGACAAGCAGTGACGATG
CCGAAAACTGCGGCGTTAGAACCGTCTCGTCAAGAACTTTCCGAAAACAT
ATCCTTTGATTTCGGCATCCTCTTCGTCGTTGAGTAATCGAGCTTTGAAA
ATCGGTCCAGGGATTGTGATGTCGCACGAAACCTATGGTAGGGGAGTGAA
GGGCCTCGCTGCCCCCAGCAGGCGCCGGGGCCCGAATCGCAAACCGAAGG
TAGTTAAATTGGATGATTCTAAGATCTGTGCAATATGTTGGGGAATGGTC
GTGCCCAACGTATCGTATTCGTCGATGACGCCGCTGACCTCCCGGTTGTG
GCCTCTCAGGGCTGGACGGATGTGGTACAAGTTGTCCAAACGTCCATCAA
CCAATGTTTCATTCGTTGTGTAGTCTAAGCATGTTTTTTTTTTGTGCTGT
TGCAGCGCTCGTGAGATGGCCATCGCTTCTTCCGTGAGGTTTTTCGCCCG
ATCTGCAAATCCACCGCTAGAACTGGACGGTATGATAACTCTATCCCTCT
AGCAGTCCCGAGGGATCTTGATATCCGTGACACCGCCAAATTGTGGGTAG
TATAATGACGTGCGGAACTTGTCTTGGTTATCTTGGTTATCTGCGTCAAA
GGTGACTCGTTGATCCTCGATGCAGCTGAACAAGTCGATGAAGAATTCGT
TCACCAAAGGATCAAGTTGTTGAAATCGGGGTTCCCGAACCAATAACAAC
TGTGTTACACATGGTGCGGGTGTGACAGTATACCAGTTGTGCTTTTCATG
GCAACGTGCAGCTGGATGCCCTGCCTTATGGGAAAAGCAATGGGAACGTT
AACGGCAAACAGTCCTTCTCGTAAGCGGAGATGACGTTTTTCTCGCCGGT
GGGTGTCCTGGTCATTGCTGCTCTTCCACGCGGCCTGACCCCTTTTGTTA
GCTCGTGTGTGGACGGCCATTATTGCCGTAGGAGGAGCACATCAGGTGAC
GAATACGCCAAGGAGTTTGATATCGTTCTGGATCGAGGCCTAAGGCGACA
TGCGTATAACAGAACCGTTGATCTTTCGATTTTTGGCAAGTGAGTGTGGT
CTTACAGATAATAAATGGATTGCAATGCAGACAGTACATGTCTGATGATA
TTGCGATCATTGTGTAACCATGCTAGCTTCTTTCTGAGGAGGGAATCGAA
ACATATGTTAATGAAACATATGTACAATTGTTTGGAATCAAAAGAAAGGA
AGTAGAACATGTAACTGAGTTTGTTTCACATCGCACGCACCGGCTGCTCA
TTGCAGCTGTAAGGCGGCCAATATACGGCGAAACCTGTTGGTAAGCCGTC
CGTATCTTTTGTCATTATGGCTTCATCGAGTTCACCGTAGCCGTAGTTGG
GATCGTGCCGTAGCCAATTGAAGTGACGTCCATTCACTGTTTGTCCTCTT
TGGTTGTTGTACGTCCGTCCGAACAGTAATAGCTCGGAGATGTCGAAGTG
TAGTGTAGATGTCATTGACTGTGGTGGTTGCGAGAACAGTGCAGAACTCT
AGTCTGCACGTGTTGCAGCGGTGGACACATACATACTCTCGCCGACTTTG
AACGTTACAAAGAGGTACTTGTTTGCATTCACGCAGGCGGTCTGCATATC
GTGCTCTTGATTGTCGATTCGTCGGACGAGGCCACCCTTGCTTGTGATGC
TGTTGGCGGGTGACCCACACATAGAGTCCGCTTGCATGTCTGCTACCCAC
ATCAAAATCATGATGCACAACGTTATACAGAAGCACGTGATACAGGATTA
GTCTACAAGCTGTGTACCATACCTTCGTTGTCGTAATCTACACGGTTGTA
TTTAGTGTGATTGGTGCATGTTTGCGTGGGGCAGCAGCTGCTTGGGACAG
CAGTAGCAGTGCATAGACTGACATGCCTGGACGCTGTGCACGTCGACGAG
TCACCATTACCTGCAGTGACAAACACATAAGAGGTCGCAATACCCGTCTG
CTGCACCGCCGATGGACGGTAAGAGGTTGTGTGTACCATCCACAGTCTCT
CTCGGGAATCGCGAATTGGTGTCCTTCGACGCTGAATATGGTTGTCGTGC
GTATTACACGCTACATGTAGCAGTACATGCTAGAGTATGTCCTGTGCGTT
TCAGCCCCCGTGACCTGCAATGACATACCGGCCGGCAGAAGGGCACATGT
CCGCTGTACAGCAGTGGGAAGCTGTGTGGATCGCGCAATGGCCGTTTTGA
CGTCAACACAGACCTCGGGATTTATCCACGCATGCATATCTTCAAAAAAG
ATTCCAAGAAACACTGAAAGTTTGTGTAGAAGAAATCCTTCATTACTTTC
TAGTTGTGCGTCCGACGATGACATTCCTACAAATGATATACTTTGTAGAC
TACAGCGGCAGTCGTCTTTTCAGCAGCAGTAGAAGATGTGTAAATGTTTG
AGAGTGCGCAGAGCCTGGCGCCCGACGCGTCTCTCACCAACGGTGGCGTG
CCTCGTGGTGCGTCGATGCAAATCGTAGCATTCAGAGGAGGTGCAGCTCG
AAAGGGACACGAAACGTGATGCATTCGCTGCAAGTGCGGCGGAATGTTGT
TTTGTAATTGTCGCATCTACCAACATCTACAGCCATTCCTCCTTGCCAAG
CTTGGCATTCTGCACTCCGCTGCTGCTGCTGTTATGCCTCTGATGTTGCT
GGGTGCGTTCAAGCGCGACAAAAAAGAAGTGCAAGTCGTCCCCACGGCCA
CGGCCAGCTCCAATGCCGACACCGCCCAAGACGAGGTGCCACGTCGGGCA
CCACGTGATGTACTTGGCGAGACGACCGCTGTTCGCGATTCTATCAAGCC
ATCTCGAGGCGCCACCCTCCCCGTCGAGGGGAACAGAGGTAAAACTCGCC
CGCCGTACACGCTTGGTAGAGATCCGGGAAACGTAAGTACCGGACAGCAG
TAGCGTTTAAGGCCAGGTCAGGAGTCGGGGGACCAATCATATTTTGAAGA
ACGGCGCACTTGCTGCTCCGCGGCGGTTTGGCACGCAGTGCAGGGACAGA
GTTGTGCGGCACAGCAGCAGTCAGCGGGAGGACTGCACAGCCTGGGTACG
TTGAGAATTGCCTATGTAACAGAAGGCGCCTCAGCAAGGACGGGCCTACT
AGGCCCAACACCCCCATGACCCAGAACGATATGTGTTCCTCCCACCTTCA
CCGCAAACGCCGCCGTCGCCTCTTGACACACGTGGCCACCCCACTCCCTC
CACGGGGACCCCGCCGCCGCCGCCGCCGACTACAATTACTGCATCCAGCA
GCGAAACGCCTCCGGCATGCGCCCCTTGCGGACGCCGCGTTGCCGACCGA
GGCAGCAGAGACCAACGCTGGGCGGGCGCGGTCGCCGAGTGGTAAGGAGG
CGGCGGAGGGAGAGGGCGTCGCGGCGGGAGGCGTCGCCGCCGCCGCCGCC
GCCGCCGCCGCCGGTAACCGGACGCAGAAGAGGATTGATTACCTGGTGTG
GGATGACTACTTCATGTCGGTCGCGTTTCTCAGCGCGATGCGGTCGAAGG
ATCCGTCTACCCAGGTCGGGGCTTGGTGAGTTAGCTGGGTGATCTCGCAG
CTGCTGGTAGCAATTGTACCCGCCGTTGCCAACACACCATACCAAAGAAA
AATGGTAGTTTGCGTTACAGTGGTGTGTGCCACTAGTGTTTGGTTTACTC
GTGAGCTTTTGTTTAGTGCTATTGTTTGTGTTTGTTTGCAGGTTGCGTTG
CGTGACCAGGTATCTCCAGCAACGCCAGAGGCGTGTTTTCGGGAGCCCAC
ACCGCGTGCGTCCCATGTTTCTCCTCCCCTGGACCCTCTTCCTCGCTGCA
ACCACGTGGTTTACCCTCTTTCTGAGCTCAAGGATTGAGACGGTGGCGTT
TGCTCCTGCTGCCGCCCCCACATCGCCGCTCCCTGCTCGCGGCCCGATAC
AAACCCCTCAAATGGAGTATGATGTAACACTTTTCGCGTGCGTTCGATGC
CTCTGGTTGTTTTCCTTTGACTTGCAACTGGACACTTTCGTTTCTTCGAC
TCTAACGGCCATGCGGTCAACGACGACGACGACGACGACGACGACGACGA
CAGCATCGTAAACCAAGACAAGCGCATCGTGGGCATCGGTTACAACGGGT
TCCCGATGGGATGCAGCGACGACGATCTGCCGTGGGCGCGCCGGGCAGAC
GACGAGCTGGACACGAAGTACCCGGTGAGGCCGGTCGGCATGTTCCTCCT
AGTCCGTTGTCTGAACACGCCGGCTCTGTTCTGA back to topCoding sequence (CDS) from alignment at Scaffold_548:270291..275274+ >EsuBft712_4a-0001 ID=EsuBft712_4a-0001|Name=EsuBft712_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=660bp|location=Sequence derived from alignment at Scaffold_548:270291..275274+ (Ectocarpus subulatus male Bft15b)
ATGAGTGGGCGCGACAAAAAAGAAGTGCAAGTCGTCCCCACGGCCACGGC
CAGCTCCAATGCCGACACCGCCCAAGACGAGGTGCCACGTCGGGCACCAC
GTGATGTACTTGGCGAGACGACCGCTGTTCGCGATTCTATCAAGCCATCT
CGAGGCGCCACCCTCCCCGTCGAGGGGAACAGAGCAGCGAAACGCCTCCG
GCATGCGCCCCTTGCGGACGCCGCGTTGCCGACCGAGGCAGCAGAGACCA
ACGCTGGGCGGGCGCGGTCGCCGAGTGGTAAGGAGGCGGCGGAGGGAGAG
GGCGTCGCGGCGGGAGGCGTCGCCGCCGCCGCCGCCGCCGCCGCCGCCGG
TAACCGGACGCAGAAGAGGATTGATTACCTGGTGTGGGATGACTACTTCA
TGTCGGTCGCGTTTCTCAGCGCGATGCGGTCGAAGGATCCGTCTACCCAG
GTCGGGGCTTGGTTGCGTTGCGTGACCAGCATCGTAAACCAAGACAAGCG
CATCGTGGGCATCGGTTACAACGGGTTCCCGATGGGATGCAGCGACGACG
ATCTGCCGTGGGCGCGCCGGGCAGACGACGAGCTGGACACGAAGTACCCG
GTGAGGCCGGTCGGCATGTTCCTCCTAGTCCGTTGTCTGAACACGCCGGC
TCTGTTCTGA back to top
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