EsuBft712_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft712_3a-0001
Unique NameEsuBft712_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_548contigScaffold_548:279769..282918 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft712_3
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length232
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_003020.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft712_3aEsuBft712_3aEctocarpus subulatus male Bft15bgeneScaffold_548 279769..282918 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft712_3a-0001-exonEsuBft712_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_548 279769..279771 -
EsuBft712_3a-0001-exonagat-exon-61654Ectocarpus subulatus male Bft15bexonScaffold_548 279908..281092 -
EsuBft712_3a-0001-exonagat-exon-61653Ectocarpus subulatus male Bft15bexonScaffold_548 281289..282215 -
EsuBft712_3a-0001-exonagat-exon-61655Ectocarpus subulatus male Bft15bexonScaffold_548 282706..282918 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft712_3a-0001-cdsEsuBft712_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_548 279769..279771 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft712_3a-0001EsuBft712_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_548 279769..282918 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft712_3a-0001 ID=EsuBft712_3a-0001|Name=EsuBft712_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2328bp|location=Sequence derived from alignment at Scaffold_548:279769..282918- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGAGCTCCGAGACGACCTCGAGAGGACCCTCACCTCCATTTCGCC
GATCAAAGAAGGCACGAGCGAGAGCATCCTCGACCGGACTCTCCGCTCCG
ACAACAGCGGCGAGCTTTTCTTCAAGGAGCTGGCCTCTCTAGAGGCCAAG
GACAGAACCAAAGTCGCGGGAGTCGCCCCGGGGGGCTGTGTCAGTCAATA
TCCCATCGGCGAGATATTCGAGAACCTGTATCGGGAGACCCATGGACTAC
CTCCGCGAAAACAGAACCACGCTTATGTTCAGGACGACGGCGATGAAGGC
AACTCCCGACCCGAAGAGCACCACGGAGTCCCGGAGGTGGAGTCATCAGC
ACCGCCAGCTGTAGCGGTAAGGGACGAGGGGGGTAGGGGGAGCCGACACC
ACGATGGCGGCGGTGAAGGCTACTGCGAGCTAGCGGCCGACCCTGACGTG
GTGCGACTGCTGGCTCAGCTTCAGGCCGGACTAGTCGACGATCCCAACTG
CTGCAGCGACGGCTCGGACACCGAGGTCGGGGGGGAGGGCAAGGGCAGGG
CGAAGGAAGACGAGGACGATGACGACAACGACGGCAAGAAAAGGGAGACC
GACGAAGGAGACCGAGGGGCGGATCAAGGAGGGCAAGAAGAGGCTGCGGG
GGACGAGACTAACGACGGCACAAACGGCCCGCGACTCGCGAGTGAAGAGC
AACACCCAGCGGGGGGGGGTTCAGCGGCGGCGGCGGCAGGAAAAAAGCGA
GCATCGTCTCCCCATGGGGGGGAGCACCACAACCCGAAGGTGGTGAGGCG
GGTGGACATAAGCAGGATGAAGATAGACGGCATCGACCCTCAGGCAAGGC
CGCGTTCGGCCCCATCGGCGTGCTTGTCGGCAGGGGGATTCTCGAGGCTA
TCGTCCAGGGCATCCAGCAGCTCGCGTCTGGCTCGCACGATGAGCCAGAG
GCTGATGGAAGCCACGAGAGAGGTTGAGGGGCAACGGGCGCCGGAGGCAC
AGGGAGGCGGAGTGGATTGCGGGCGGGGGGCTGGGCGGGGGGAAGCAGCC
GGGAGGCTCCGGCCTAGCACCTCGGCATCGCGAATCGCGCTGGCGGAGGA
GAGGATAGATGTTGTAAAGCAAAATGCCGAGGCGCTGCAGGCGAGCATGT
CGGTGAAGCGGACGAGGTACCTCAACTCCCGCAAGCCCCGCGCCGCGAGG
TGGTCTCCCCGCGACCGCGATCTCCCTGTTGGTTCAAGAGGACAACCCTC
CGGAACTCGAGCCGCGTCGCGCTCGGGGGCACCTCCGCCGTCGGCCGTGA
GAGAGCGACCAAAGACTGCCGTCGCGAAGAACCGTCGACACTGCCCGCAT
AACAGCCGTGGCCACGCCGGTAACACCAACAACGGCAACCCGTTGCTCAA
CCGTCGAGAAACGGAGTTTCTGTTTGGGGCTGGGACGGCACCCGAAGTGG
CGGCGGCGGCGGTGGCGGCGACGGCGGCTGAAGACGATGACGACGACGAC
TCTCGGCGAGCGCCTTCGCTGCGAAAGACAACGCTCGGTCGGATGCTGCG
GCGTTCTTCGGCTTCGTCGTTCTCACCGAGCAACGGAGGCGACGTCCGCC
GGCGCAACGTTCGACCCGAGTTATCAGAATGCAACAGCAGCAGCGCTTCT
TCCCTTTATCGCCGCCCGTTGTCCGCCGGTATCGCCTGCAGCGGCTCCTT
GTTCTTGGAAGACGGCCAGCGAAGGGCGGGGAGAGGCACCGCGCAAGCGA
TTGACCATGGCACTTCTTGCGCCAAGCATACGCTGGGTGCAGTGCCTCGC
GCCGGGAAGCACGCGGCGGTGGCACAGGCAGCAGCAACGAGGGTGAGAAG
AAGGCCCTCGAGCGCTGCGCCTGGGAACGGGTGCTCTCGACGAAGGGACC
GGCCGTCGTCGCCGTCACAGACATCCTCCCACCACTACGGTAGACACCAA
CAGACCGCGGGCGGCGGTCGAACCCGAACCCGCAAAGGCAGCCCCTCTTC
CCGAAAAAACGACGGAGGCGGTGGTCAGGGTCCGGCGGCGAGATCGTCGT
TGGCACAAACGCGCGGAGATCACCACGAGGCGGCGGCGGTGGCGTCGCAC
GGTTGGGGGGACCAAGGCGTCGGCGCGACGCCGGCCGCGGGGGAACGGGC
GGGGCGAGAACCCACCGCGATGATGAACGCGCGCCAGGCCCTCGAGGCGA
CCATCAGGGAGGCCGTCGACACCGTCTCTCCTGTCGAGCAGTTCGTGAAC
GCGAGAAAGACCATTACGGACATGAAGCAGATCAACACTCAGGATACCAC
CGGCGACATCCTCCTGTCCACCCAGTAA
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protein sequence of EsuBft712_3a-0001

>EsuBft712_3 ID=EsuBft712_3|Name=EsuBft712_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=775bp
MEELRDDLERTLTSISPIKEGTSESILDRTLRSDNSGELFFKELASLEAK
DRTKVAGVAPGGCVSQYPIGEIFENLYRETHGLPPRKQNHAYVQDDGDEG
NSRPEEHHGVPEVESSAPPAVAVRDEGGRGSRHHDGGGEGYCELAADPDV
VRLLAQLQAGLVDDPNCCSDGSDTEVGGEGKGRAKEDEDDDDNDGKKRET
DEGDRGADQGGQEEAAGDETNDGTNGPRLASEEQHPAGGGSAAAAAGKKR
ASSPHGGEHHNPKVVRRVDISRMKIDGIDPQARPRSAPSACLSAGGFSRL
SSRASSSSRLARTMSQRLMEATREVEGQRAPEAQGGGVDCGRGAGRGEAA
GRLRPSTSASRIALAEERIDVVKQNAEALQASMSVKRTRYLNSRKPRAAR
WSPRDRDLPVGSRGQPSGTRAASRSGAPPPSAVRERPKTAVAKNRRHCPH
NSRGHAGNTNNGNPLLNRRETEFLFGAGTAPEVAAAAVAATAAEDDDDDD
SRRAPSLRKTTLGRMLRRSSASSFSPSNGGDVRRRNVRPELSECNSSSAS
SLYRRPLSAGIACSGSLFLEDGQRRAGRGTAQAIDHGTSCAKHTLGAVPR
AGKHAAVAQAAATRVRRRPSSAAPGNGCSRRRDRPSSPSQTSSHHYGRHQ
QTAGGGRTRTRKGSPSSRKNDGGGGQGPAARSSLAQTRGDHHEAAAVASH
GWGDQGVGATPAAGERAGREPTAMMNARQALEATIREAVDTVSPVEQFVN
ARKTITDMKQINTQDTTGDILLSTQ
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mRNA from alignment at Scaffold_548:279769..282918-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft712_3a-0001 ID=EsuBft712_3a-0001|Name=EsuBft712_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3150bp|location=Sequence derived from alignment at Scaffold_548:279769..282918- (Ectocarpus subulatus male Bft15b)
ATGGAGGAGCTCCGAGACGACCTCGAGAGGACCCTCACCTCCATTTCGCC
GATCAAAGAAGGCACGAGCGAGAGCATCCTCGACCGGACTCTCCGCTCCG
ACAACAGCGGCGAGCTTTTCTTCAAGGAGCTGGCCTCTCTAGAGGCCAAG
GACAGAACCAAAGTCGCGGGAGTCGCCCCGGGGGGCTGTGTCAGTCAATA
TCCCATCGGCGAGGTGGGGTCTCGATGAAAGAGTGTGGGATGAACTGCAG
CATGTGTTACCGTAGTTCATGGAAGATGCCGCGTTGGACAGCGCTATGTA
GCACGGTGTACCGCAGCCGAACGCAACGCATGAGCATCCATTCCCGGCGC
AAGTACGAGACTCGCGTGGTAATGGGAAAGAAGCGAGCCATGCGAATGAA
GGATGCTGTTTTCCGTGGCAGTACATTGCAACGTTGGCACCGACGACGAG
AAATATGTGTAGATGGGAGCCTACAGGCATTACTATCATTCCCCTCCTCA
TATATTTCCTTGCATCTTTCGTGCGAAGCAGGCCGCCAAAGTGCTGTCAA
GATTACATTAGTCTCGCTATACTGTAAAAATTTTGAGTTTCGACAGGCGC
TCAAGCGATCGATCTCCGGCCAGAGTGTCTTCACGCGCCCTAATCAGACC
TGCCATTGTTGGTTGATCCACACGGGGCGCGGCCTTCCGCTACCGTTCCG
CAGATATTCGAGAACCTGTATCGGGAGACCCATGGACTACCTCCGCGAAA
ACAGAACCACGCTTATGTTCAGGACGACGGCGATGAAGGCAACTCCCGAC
CCGAAGAGCACCACGGAGTCCCGGAGGTGGAGTCATCAGCACCGCCAGCT
GTAGCGGTAAGGGACGAGGGGGGTAGGGGGAGCCGACACCACGATGGCGG
CGGTGAAGGCTACTGCGAGCTAGCGGCCGACCCTGACGTGGTGCGACTGC
TGGCTCAGCTTCAGGCCGGACTAGTCGACGATCCCAACTGCTGCAGCGAC
GGCTCGGACACCGAGGTCGGGGGGGAGGGCAAGGGCAGGGCGAAGGAAGA
CGAGGACGATGACGACAACGACGGCAAGAAAAGGGAGACCGACGAAGGAG
ACCGAGGGGCGGATCAAGGAGGGCAAGAAGAGGCTGCGGGGGACGAGACT
AACGACGGCACAAACGGCCCGCGACTCGCGAGTGAAGAGCAACACCCAGC
GGGGGGGGGTTCAGCGGCGGCGGCGGCAGGAAAAAAGCGAGCATCGTCTC
CCCATGGGGGGGAGCACCACAACCCGAAGGTGGTGAGGCGGGTGGACATA
AGCAGGATGAAGATAGACGGCATCGACCCTCAGGCAAGGCCGCGTTCGGC
CCCATCGGCGTGCTTGTCGGCAGGGGGATTCTCGAGGCTATCGTCCAGGG
CATCCAGCAGCTCGCGTCTGGCTCGCACGATGAGCCAGAGGCTGATGGAA
GCCACGAGAGAGGTTGAGGGGCAACGGGCGCCGGAGGCACAGGGAGGCGG
AGTGGATTGCGGGCGGGGGGCTGGGCGGGGGGAAGCAGCCGGGAGGCTCC
GGCCTAGCACCTCGGCATCGCGAATCGCGCTGGCGGAGGAGAGGATAGAT
GTTGTAAAGCAAAATGCCGAGGCGCTGCAGGTATGCAAGAGTTCTCCCAT
GAGCAACACAACAGAAGTTGAAAGCGCGCCCAACCACTGCTGGTGTTGTC
GCTAGTAGGATAACTATCGATATGATTCGCCTTCGAAGGGATGTTTGGTC
TACACCGTCTATTGTCAAGGGGCTAAGGCAAGCGCCCCTCTCCCCTCTCC
ACCCCGCCGTTGACGTCGCGCGCCAGGCGAGCATGTCGGTGAAGCGGACG
AGGTACCTCAACTCCCGCAAGCCCCGCGCCGCGAGGTGGTCTCCCCGCGA
CCGCGATCTCCCTGTTGGTTCAAGAGGACAACCCTCCGGAACTCGAGCCG
CGTCGCGCTCGGGGGCACCTCCGCCGTCGGCCGTGAGAGAGCGACCAAAG
ACTGCCGTCGCGAAGAACCGTCGACACTGCCCGCATAACAGCCGTGGCCA
CGCCGGTAACACCAACAACGGCAACCCGTTGCTCAACCGTCGAGAAACGG
AGTTTCTGTTTGGGGCTGGGACGGCACCCGAAGTGGCGGCGGCGGCGGTG
GCGGCGACGGCGGCTGAAGACGATGACGACGACGACTCTCGGCGAGCGCC
TTCGCTGCGAAAGACAACGCTCGGTCGGATGCTGCGGCGTTCTTCGGCTT
CGTCGTTCTCACCGAGCAACGGAGGCGACGTCCGCCGGCGCAACGTTCGA
CCCGAGTTATCAGAATGCAACAGCAGCAGCGCTTCTTCCCTTTATCGCCG
CCCGTTGTCCGCCGGTATCGCCTGCAGCGGCTCCTTGTTCTTGGAAGACG
GCCAGCGAAGGGCGGGGAGAGGCACCGCGCAAGCGATTGACCATGGCACT
TCTTGCGCCAAGCATACGCTGGGTGCAGTGCCTCGCGCCGGGAAGCACGC
GGCGGTGGCACAGGCAGCAGCAACGAGGGTGAGAAGAAGGCCCTCGAGCG
CTGCGCCTGGGAACGGGTGCTCTCGACGAAGGGACCGGCCGTCGTCGCCG
TCACAGACATCCTCCCACCACTACGGTAGACACCAACAGACCGCGGGCGG
CGGTCGAACCCGAACCCGCAAAGGCAGCCCCTCTTCCCGAAAAAACGACG
GAGGCGGTGGTCAGGGTCCGGCGGCGAGATCGTCGTTGGCACAAACGCGC
GGAGATCACCACGAGGCGGCGGCGGTGGCGTCGCACGGTTGGGGGGACCA
AGGCGTCGGCGCGACGCCGGCCGCGGGGGAACGGGCGGGGCGAGAACCCA
CCGCGATGATGAACGCGCGCCAGGCCCTCGAGGCGACCATCAGGGAGGCC
GTCGACACCGTCTCTCCTGTCGAGCAGTTCGTGAACGCGAGAAAGACCAT
TACGGACATGAAGCAGATCAACACTCAGGATACCACCGGCGACATCCTCC
TGTCCACCCAGGTGAGAGAGAGAGCCGGCGTTGTCTTGGTGGGGGGGGGG
GGGCATTTTATGTGGAGACTCCGTATGACGACTCGGCGAGTCCGTGCTGC
GCAGCGAAACTCTGCCGTTCACCGCCGTAATGCGGAGCAGGCCTCAGTAA
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Coding sequence (CDS) from alignment at Scaffold_548:279769..282918-

>EsuBft712_3a-0001 ID=EsuBft712_3a-0001|Name=EsuBft712_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2328bp|location=Sequence derived from alignment at Scaffold_548:279769..282918- (Ectocarpus subulatus male Bft15b)
ATGGAGGAGCTCCGAGACGACCTCGAGAGGACCCTCACCTCCATTTCGCC
GATCAAAGAAGGCACGAGCGAGAGCATCCTCGACCGGACTCTCCGCTCCG
ACAACAGCGGCGAGCTTTTCTTCAAGGAGCTGGCCTCTCTAGAGGCCAAG
GACAGAACCAAAGTCGCGGGAGTCGCCCCGGGGGGCTGTGTCAGTCAATA
TCCCATCGGCGAGATATTCGAGAACCTGTATCGGGAGACCCATGGACTAC
CTCCGCGAAAACAGAACCACGCTTATGTTCAGGACGACGGCGATGAAGGC
AACTCCCGACCCGAAGAGCACCACGGAGTCCCGGAGGTGGAGTCATCAGC
ACCGCCAGCTGTAGCGGTAAGGGACGAGGGGGGTAGGGGGAGCCGACACC
ACGATGGCGGCGGTGAAGGCTACTGCGAGCTAGCGGCCGACCCTGACGTG
GTGCGACTGCTGGCTCAGCTTCAGGCCGGACTAGTCGACGATCCCAACTG
CTGCAGCGACGGCTCGGACACCGAGGTCGGGGGGGAGGGCAAGGGCAGGG
CGAAGGAAGACGAGGACGATGACGACAACGACGGCAAGAAAAGGGAGACC
GACGAAGGAGACCGAGGGGCGGATCAAGGAGGGCAAGAAGAGGCTGCGGG
GGACGAGACTAACGACGGCACAAACGGCCCGCGACTCGCGAGTGAAGAGC
AACACCCAGCGGGGGGGGGTTCAGCGGCGGCGGCGGCAGGAAAAAAGCGA
GCATCGTCTCCCCATGGGGGGGAGCACCACAACCCGAAGGTGGTGAGGCG
GGTGGACATAAGCAGGATGAAGATAGACGGCATCGACCCTCAGGCAAGGC
CGCGTTCGGCCCCATCGGCGTGCTTGTCGGCAGGGGGATTCTCGAGGCTA
TCGTCCAGGGCATCCAGCAGCTCGCGTCTGGCTCGCACGATGAGCCAGAG
GCTGATGGAAGCCACGAGAGAGGTTGAGGGGCAACGGGCGCCGGAGGCAC
AGGGAGGCGGAGTGGATTGCGGGCGGGGGGCTGGGCGGGGGGAAGCAGCC
GGGAGGCTCCGGCCTAGCACCTCGGCATCGCGAATCGCGCTGGCGGAGGA
GAGGATAGATGTTGTAAAGCAAAATGCCGAGGCGCTGCAGGCGAGCATGT
CGGTGAAGCGGACGAGGTACCTCAACTCCCGCAAGCCCCGCGCCGCGAGG
TGGTCTCCCCGCGACCGCGATCTCCCTGTTGGTTCAAGAGGACAACCCTC
CGGAACTCGAGCCGCGTCGCGCTCGGGGGCACCTCCGCCGTCGGCCGTGA
GAGAGCGACCAAAGACTGCCGTCGCGAAGAACCGTCGACACTGCCCGCAT
AACAGCCGTGGCCACGCCGGTAACACCAACAACGGCAACCCGTTGCTCAA
CCGTCGAGAAACGGAGTTTCTGTTTGGGGCTGGGACGGCACCCGAAGTGG
CGGCGGCGGCGGTGGCGGCGACGGCGGCTGAAGACGATGACGACGACGAC
TCTCGGCGAGCGCCTTCGCTGCGAAAGACAACGCTCGGTCGGATGCTGCG
GCGTTCTTCGGCTTCGTCGTTCTCACCGAGCAACGGAGGCGACGTCCGCC
GGCGCAACGTTCGACCCGAGTTATCAGAATGCAACAGCAGCAGCGCTTCT
TCCCTTTATCGCCGCCCGTTGTCCGCCGGTATCGCCTGCAGCGGCTCCTT
GTTCTTGGAAGACGGCCAGCGAAGGGCGGGGAGAGGCACCGCGCAAGCGA
TTGACCATGGCACTTCTTGCGCCAAGCATACGCTGGGTGCAGTGCCTCGC
GCCGGGAAGCACGCGGCGGTGGCACAGGCAGCAGCAACGAGGGTGAGAAG
AAGGCCCTCGAGCGCTGCGCCTGGGAACGGGTGCTCTCGACGAAGGGACC
GGCCGTCGTCGCCGTCACAGACATCCTCCCACCACTACGGTAGACACCAA
CAGACCGCGGGCGGCGGTCGAACCCGAACCCGCAAAGGCAGCCCCTCTTC
CCGAAAAAACGACGGAGGCGGTGGTCAGGGTCCGGCGGCGAGATCGTCGT
TGGCACAAACGCGCGGAGATCACCACGAGGCGGCGGCGGTGGCGTCGCAC
GGTTGGGGGGACCAAGGCGTCGGCGCGACGCCGGCCGCGGGGGAACGGGC
GGGGCGAGAACCCACCGCGATGATGAACGCGCGCCAGGCCCTCGAGGCGA
CCATCAGGGAGGCCGTCGACACCGTCTCTCCTGTCGAGCAGTTCGTGAAC
GCGAGAAAGACCATTACGGACATGAAGCAGATCAACACTCAGGATACCAC
CGGCGACATCCTCCTGTCCACCCAGTAA
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