Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft712_12 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 5 |
| Length | 133 |
| Hectar predicted targeting category | other localisation |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft712_12a-0001 ID=EsuBft712_12a-0001|Name=EsuBft712_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1334bp|location=Sequence derived from alignment at Scaffold_548:193907..196340+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CTCGTTCTTAGTTCTCCACGGCAATCGACTCCGCTTGGTCGAATTGCATT
CAGAGGACACCACTCTCGAGGTCATCAGACCTAATCTCGTTCTAGGACGG
CCGTCCCGACTTGGGCCTGGCCGTGGCTCGTGGCAGCCTCATGCAGGTAG
ACCGCACAATCGAAATCCGAGGGGAAGAGAGGGTAGTGAGACAGCAGCGG
AAGAATCACATCCGCGGGATACTGCTAATCAGCCAGCTGTTGAGAAAGGG
TACCACCGAGGCAGCTGGAAAACCTGTGCAATCTGTGGTTGCTGATGAAG
TTGAGCTCCTCGAAAAGGGTAGAGAGCACGTTGAAGGCATCCGAGAGAGA
GCATCGAAACGCGGGAAACGACAGCCTGCTGCTGCTGCTGCTGCTTCATC
TGCTGCGGCGAAGAAGGCGAAGCGCAAGGGGGCGGACGCAGCTCTCTCCG
ACCCTCTAGCATTGGCTCATGATGGCGGGACTAGACGTGGTGCTACCTCA
GATACTTCGCGGGAGGAAGCGGTTGCGGAGGAGCGTCGCTCTAGCGCGAT
GGATTTGATGCAGAACGACCCCGTGTTGATGGAGCGAGTACGGGCCATGC
TGGATGCTGTCGCGGCAGAGCAGGCAGCAGCTAAGGTGGCTGCGATCGAC
GCGGTCAACACTCGTGCACTCTGCGCGTCGATGCAAGCGGTGAAGCAGCA
CTGCAACAGCTTGATAGGATGCACATTGTACAACACGAACCACGACATCG
CCCCCAAGATCGCTGCGAGTGAGGGATGCTACGTGTACAACGAGCACAAG
ACACGGAGTGACGTGACGAATCCCGGGAACAGAGGAGGAGCAGGGGGAGG
TGCAGGATACCTGAAGTCTTGTGTGGGGGTGCAGACAGACGATTTTGTGG
TGGGAGCGGCCGGAGACAAGGTGTTGACGGCTAGGAAGTGGGCGGTAGAC
GAGTCCAGGGCGAGGAAATGGGCCGCCCGCAAAAAGTTCACCAGATCTTG
GAAGTTGCGGGTTCGGGGCGCATCGTGCTACTGCTCGACTTGCCGAATAG
GCTGCTACGATGACTGCATGGTAGCGAAGGTGTACCCCGACTTGGTTGGC
GAGAAGTCGGGAAAAGAGATGGTTGGGAGACGCACGCTTGGGACTCAATT
GACCGGCGTTATTCTTCCGGTCATATCTTCGGACGAGTCCCCAGTGGCGC
CTACGCTTGACGAGAGCATGGGGGAGGAGGAGGAGGAGGAGGGGGAGGAG
GAGGGGGAGCGGGAGGAAGCGCAATACGTAAGCTCAAGAGGTCGCGTAAG
TATCGCGAAGAAGAGGTTCCCGGAGGTGGGCTAG back to topprotein sequence of EsuBft712_12a-0001 >EsuBft712_12 ID=EsuBft712_12|Name=EsuBft712_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=397bp
MQVDRTIEIRGEERVVRQQRKNHIRGILLISQLLRKGTTEAAGKPVQSVV
ADEVELLEKGREHVEGIRERASKRGKRQPAAAAAASSAAAKKAKRKGADA
ALSDPLALAHDGGTRRGATSDTSREEAVAEERRSSAMDLMQNDPVLMERV
RAMLDAVAAEQAAAKVAAIDAVNTRALCASMQAVKQHCNSLIGCTLYNTN
HDIAPKIAASEGCYVYNEHKTRSDVTNPGNRGGAGGGAGYLKSCVGVQTD
DFVVGAAGDKVLTARKWAVDESRARKWAARKKFTRSWKLRVRGASCYCST
CRIGCYDDCMVAKVYPDLVGEKSGKEMVGRRTLGTQLTGVILPVISSDES
PVAPTLDESMGEEEEEEGEEEGEREEAQYVSSRGRVSIAKKRFPEVG back to topmRNA from alignment at Scaffold_548:193907..196340+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft712_12a-0001 ID=EsuBft712_12a-0001|Name=EsuBft712_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2434bp|location=Sequence derived from alignment at Scaffold_548:193907..196340+ (Ectocarpus subulatus male Bft15b)
CTCGTTCTTAGTTCTCCACGGCAATCGACTCCGCTTGGTCGAATTGCATT
CAGAGGACACCACTCTCGAGGTCATCAGACCTAATCTCGTTCTAGGACGG
CCGTCCCGACTTGGGCCTGGCCGTGGCTCGTGGCAGCCTCATGCAGGTAG
ACCGCACAATCGAAATCCGAGGGGAAGAGAGGGTAGTGAGACAGCAGCGG
AAGAATCACATCCGCGGGATACTGCTAATCAGCCAGCTGTTGAGAAAGGG
TACCACCGAGGCAGCTGGAAAACCTGTGCAATCTGTGGTTGCTGATGAAG
TTGAGCTCCTCGAAAAGGGTAGAGAGCACGTTGAAGGCATCCGAGAGAGA
GCATCGAAACGCGGGAAACGACAGCCTGCTGCTGCTGCTGCTGCTTCATC
TGCTGCGGCGAAGAAGGCGAAGCGCAAGGGGGCGGACGCAGCTCTCTCCG
ACCCTCTAGCATTGGCTCATGATGGCGGGACTAGACGTGGTGCTACCTCA
GATACTTCGCGGGAGGAAGCGGTGAGTTTTGAATCACTTCTGAGGTGCTG
CTGAAAGGTGTTCTAGTGCTTGATTGACTGCGCTTTACTTTGCGCGCCAG
TTCGTGCCAGCAGCTCTAGACTATTACTGTTCTTGAATTTGAAATTTGGT
ACACGCGCTGCCCGTCCTCTTTGCCCCCAAGAATCGAGGTCCATTCCACC
ACGTCGATATCTTAAGCACAGAAAGCGCATTGAAAGTTGTACAGGTTTGG
TGACTGCTGTAACTGCTGCAATGACGCTGCTACCGTGGTGTTTATTTGTC
GCTCACTCAGACCCCGACTCCTCCAATAACTAGACTACTGATATGTTGCA
CGCAGGTTGCGGAGGAGCGTCGCTCTAGCGCGATGGATTTGATGCAGAAC
GACCCCGTGTTGATGGAGCGAGTACGGGCCATGCTGGATGCTGTCGCGGC
AGAGCAGGCAGCAGCTAAGGTGGCTGCGATCGACGCGGTCAACACTCGTG
CACTCTGCGCGTCGATGCAAGCGGTGAAGCAGCACTGCAACAGCTTGATA
GGGTNTGCTGGATGCTGGCGCGGCAGAGCAGGCAGCAGCTAAGGTGGCGG
CGATCGACGCGGCCAACACTCGTGCACTCCGCGCGTCGTTGCAAGCGCTG
AAGCAGCACTGCAACAGCTCGATAGGGTGGACCACTTACCAGACAGCGCT
CGCTGTAGCAGCCGGAGCGGGAGAGCACACGTGTACTGACACGGACGTGT
GCCACCCCGGCCAGCGGTGCAAGCCCGTTGAGTCTGGTGGAGTGAGCCTT
GCCGAGCGAGCCAACAGTCTCGGCATTCGGCACGAGACTTTCAGCGACGC
ACGGCGGCAGATGCACATTGTACAACACGAACCACGACATCGCCCCCAAG
ATCGCTGCGAGTGAGGGATGCTACGTGTACAACGAGCACAAGACACGGAG
TGACGTGACGAATCCCGGGAACAGAGGAGGAGCAGGGGGAGGTGCAGGAT
ACCTGAAGTCTTGTGTGGGGGTGCAGACAGACGATTTTGTGGTGGGAGCG
GCCGGAGACAAGGTGTTGACGGCTAGGAAGTGGGCGGTAGACGAGTCCAG
GGCGAGGAAATGGGCCGCCCGCAAAAAGTTCACCAGATCTTGGAAGTTGC
GGGTTCGGGGCGCATCGTGCTACTGCTCGACTTGCCGAATAGGCTGCTAC
GATGACTGCATGGTAGCGAAGGTGTACCCCGACTTGGTTGGCGAGGTGAT
GGAGTGTTCGTGTGTGCATGAGCGGATCAGAATATTCGAACGGGACTGTA
GTAAGTGGCCACGCGGATTGGAATTGATAGTCCCCTAGATTGGTTTCATG
GTTGATCCACGGGGCTCGGACCTGCGGGAGTGCTTGCTGTGTCGCGGCAC
TCTCTCTCTCCCGCCGCGTCCTGTTCGTGTCTGCTGTCCTCAATACCAGT
GATACTAACATGGAGAAGTCGNACTGTAGGAAGTGGCTACGCAGATTGGA
ATTGATAGTCCCCTGGGTTGGTTTCATGGTTGATCCACGGGGCTCGGACC
TGCGGGAGTGCTTGCTGTGTCGCGGCACTCTCTCTCTCCCGCCGCGTCCT
GTTCGTGTCTGCTGTCCTCAATACCAGTGATACTAACATGGAGAAGTCGG
GAAAAGAGATGGTTGGGAGACGCACGCTTGGGACTCAATTGACCGGCGTT
ATTCTTCCGGTCATATCTTCGGACGAGTCCCCAGTGGCGCCTACGCTTGA
CGAGAGCATGGGGGAGGTGGGTGGGGGAGGGGAGAAGGAAGATGAGGGAG
AGGAGGAGGACGATGAGGGGGAGGAGGAGGAGGAGGAGGAGGGGGAGGAG
GAGGGGGAGCGGGAGGAAGCGCAATACGTAAGCTCAAGAGGTCGCGTAAG
TATCGCGAAGAAGAGGTTCCCGGAGGTGGGCTAG back to topCoding sequence (CDS) from alignment at Scaffold_548:193907..196340+ >EsuBft712_12a-0001 ID=EsuBft712_12a-0001|Name=EsuBft712_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1194bp|location=Sequence derived from alignment at Scaffold_548:193907..196340+ (Ectocarpus subulatus male Bft15b)
ATGCAGGTAGACCGCACAATCGAAATCCGAGGGGAAGAGAGGGTAGTGAG
ACAGCAGCGGAAGAATCACATCCGCGGGATACTGCTAATCAGCCAGCTGT
TGAGAAAGGGTACCACCGAGGCAGCTGGAAAACCTGTGCAATCTGTGGTT
GCTGATGAAGTTGAGCTCCTCGAAAAGGGTAGAGAGCACGTTGAAGGCAT
CCGAGAGAGAGCATCGAAACGCGGGAAACGACAGCCTGCTGCTGCTGCTG
CTGCTTCATCTGCTGCGGCGAAGAAGGCGAAGCGCAAGGGGGCGGACGCA
GCTCTCTCCGACCCTCTAGCATTGGCTCATGATGGCGGGACTAGACGTGG
TGCTACCTCAGATACTTCGCGGGAGGAAGCGGTTGCGGAGGAGCGTCGCT
CTAGCGCGATGGATTTGATGCAGAACGACCCCGTGTTGATGGAGCGAGTA
CGGGCCATGCTGGATGCTGTCGCGGCAGAGCAGGCAGCAGCTAAGGTGGC
TGCGATCGACGCGGTCAACACTCGTGCACTCTGCGCGTCGATGCAAGCGG
TGAAGCAGCACTGCAACAGCTTGATAGGATGCACATTGTACAACACGAAC
CACGACATCGCCCCCAAGATCGCTGCGAGTGAGGGATGCTACGTGTACAA
CGAGCACAAGACACGGAGTGACGTGACGAATCCCGGGAACAGAGGAGGAG
CAGGGGGAGGTGCAGGATACCTGAAGTCTTGTGTGGGGGTGCAGACAGAC
GATTTTGTGGTGGGAGCGGCCGGAGACAAGGTGTTGACGGCTAGGAAGTG
GGCGGTAGACGAGTCCAGGGCGAGGAAATGGGCCGCCCGCAAAAAGTTCA
CCAGATCTTGGAAGTTGCGGGTTCGGGGCGCATCGTGCTACTGCTCGACT
TGCCGAATAGGCTGCTACGATGACTGCATGGTAGCGAAGGTGTACCCCGA
CTTGGTTGGCGAGAAGTCGGGAAAAGAGATGGTTGGGAGACGCACGCTTG
GGACTCAATTGACCGGCGTTATTCTTCCGGTCATATCTTCGGACGAGTCC
CCAGTGGCGCCTACGCTTGACGAGAGCATGGGGGAGGAGGAGGAGGAGGA
GGGGGAGGAGGAGGGGGAGCGGGAGGAAGCGCAATACGTAAGCTCAAGAG
GTCGCGTAAGTATCGCGAAGAAGAGGTTCCCGGAGGTGGGCTAG back to top
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