EsuBft712_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft712_12a-0001
Unique NameEsuBft712_12a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_548contigScaffold_548:193907..196340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft712_12
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Length133
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft712_12aEsuBft712_12aEctocarpus subulatus male Bft15bgeneScaffold_548 193907..196340 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft712_12a-0001EsuBft712_12Ectocarpus subulatus male Bft15bpolypeptideScaffold_548 194047..196340 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft712_12a-0001-exonagat-exon-61704Ectocarpus subulatus male Bft15bexonScaffold_548 193907..194427 +
EsuBft712_12a-0001-exonagat-exon-61706Ectocarpus subulatus male Bft15bexonScaffold_548 194762..194958 +
EsuBft712_12a-0001-exonEsuBft712_12a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_548 195267..195651 +
EsuBft712_12a-0001-exonagat-exon-61705Ectocarpus subulatus male Bft15bexonScaffold_548 196050..196172 +
EsuBft712_12a-0001-exonagat-exon-61703Ectocarpus subulatus male Bft15bexonScaffold_548 196233..196340 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft712_12a-0001-exonagat-five_prime_utr-13174Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_548 193907..194046 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft712_12a-0001-cdsEsuBft712_12a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_548 194047..194427 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft712_12a-0001 ID=EsuBft712_12a-0001|Name=EsuBft712_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1334bp|location=Sequence derived from alignment at Scaffold_548:193907..196340+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTCGTTCTTAGTTCTCCACGGCAATCGACTCCGCTTGGTCGAATTGCATT
CAGAGGACACCACTCTCGAGGTCATCAGACCTAATCTCGTTCTAGGACGG
CCGTCCCGACTTGGGCCTGGCCGTGGCTCGTGGCAGCCTCATGCAGGTAG
ACCGCACAATCGAAATCCGAGGGGAAGAGAGGGTAGTGAGACAGCAGCGG
AAGAATCACATCCGCGGGATACTGCTAATCAGCCAGCTGTTGAGAAAGGG
TACCACCGAGGCAGCTGGAAAACCTGTGCAATCTGTGGTTGCTGATGAAG
TTGAGCTCCTCGAAAAGGGTAGAGAGCACGTTGAAGGCATCCGAGAGAGA
GCATCGAAACGCGGGAAACGACAGCCTGCTGCTGCTGCTGCTGCTTCATC
TGCTGCGGCGAAGAAGGCGAAGCGCAAGGGGGCGGACGCAGCTCTCTCCG
ACCCTCTAGCATTGGCTCATGATGGCGGGACTAGACGTGGTGCTACCTCA
GATACTTCGCGGGAGGAAGCGGTTGCGGAGGAGCGTCGCTCTAGCGCGAT
GGATTTGATGCAGAACGACCCCGTGTTGATGGAGCGAGTACGGGCCATGC
TGGATGCTGTCGCGGCAGAGCAGGCAGCAGCTAAGGTGGCTGCGATCGAC
GCGGTCAACACTCGTGCACTCTGCGCGTCGATGCAAGCGGTGAAGCAGCA
CTGCAACAGCTTGATAGGATGCACATTGTACAACACGAACCACGACATCG
CCCCCAAGATCGCTGCGAGTGAGGGATGCTACGTGTACAACGAGCACAAG
ACACGGAGTGACGTGACGAATCCCGGGAACAGAGGAGGAGCAGGGGGAGG
TGCAGGATACCTGAAGTCTTGTGTGGGGGTGCAGACAGACGATTTTGTGG
TGGGAGCGGCCGGAGACAAGGTGTTGACGGCTAGGAAGTGGGCGGTAGAC
GAGTCCAGGGCGAGGAAATGGGCCGCCCGCAAAAAGTTCACCAGATCTTG
GAAGTTGCGGGTTCGGGGCGCATCGTGCTACTGCTCGACTTGCCGAATAG
GCTGCTACGATGACTGCATGGTAGCGAAGGTGTACCCCGACTTGGTTGGC
GAGAAGTCGGGAAAAGAGATGGTTGGGAGACGCACGCTTGGGACTCAATT
GACCGGCGTTATTCTTCCGGTCATATCTTCGGACGAGTCCCCAGTGGCGC
CTACGCTTGACGAGAGCATGGGGGAGGAGGAGGAGGAGGAGGGGGAGGAG
GAGGGGGAGCGGGAGGAAGCGCAATACGTAAGCTCAAGAGGTCGCGTAAG
TATCGCGAAGAAGAGGTTCCCGGAGGTGGGCTAG
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protein sequence of EsuBft712_12a-0001

>EsuBft712_12 ID=EsuBft712_12|Name=EsuBft712_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=397bp
MQVDRTIEIRGEERVVRQQRKNHIRGILLISQLLRKGTTEAAGKPVQSVV
ADEVELLEKGREHVEGIRERASKRGKRQPAAAAAASSAAAKKAKRKGADA
ALSDPLALAHDGGTRRGATSDTSREEAVAEERRSSAMDLMQNDPVLMERV
RAMLDAVAAEQAAAKVAAIDAVNTRALCASMQAVKQHCNSLIGCTLYNTN
HDIAPKIAASEGCYVYNEHKTRSDVTNPGNRGGAGGGAGYLKSCVGVQTD
DFVVGAAGDKVLTARKWAVDESRARKWAARKKFTRSWKLRVRGASCYCST
CRIGCYDDCMVAKVYPDLVGEKSGKEMVGRRTLGTQLTGVILPVISSDES
PVAPTLDESMGEEEEEEGEEEGEREEAQYVSSRGRVSIAKKRFPEVG
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mRNA from alignment at Scaffold_548:193907..196340+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft712_12a-0001 ID=EsuBft712_12a-0001|Name=EsuBft712_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2434bp|location=Sequence derived from alignment at Scaffold_548:193907..196340+ (Ectocarpus subulatus male Bft15b)
CTCGTTCTTAGTTCTCCACGGCAATCGACTCCGCTTGGTCGAATTGCATT
CAGAGGACACCACTCTCGAGGTCATCAGACCTAATCTCGTTCTAGGACGG
CCGTCCCGACTTGGGCCTGGCCGTGGCTCGTGGCAGCCTCATGCAGGTAG
ACCGCACAATCGAAATCCGAGGGGAAGAGAGGGTAGTGAGACAGCAGCGG
AAGAATCACATCCGCGGGATACTGCTAATCAGCCAGCTGTTGAGAAAGGG
TACCACCGAGGCAGCTGGAAAACCTGTGCAATCTGTGGTTGCTGATGAAG
TTGAGCTCCTCGAAAAGGGTAGAGAGCACGTTGAAGGCATCCGAGAGAGA
GCATCGAAACGCGGGAAACGACAGCCTGCTGCTGCTGCTGCTGCTTCATC
TGCTGCGGCGAAGAAGGCGAAGCGCAAGGGGGCGGACGCAGCTCTCTCCG
ACCCTCTAGCATTGGCTCATGATGGCGGGACTAGACGTGGTGCTACCTCA
GATACTTCGCGGGAGGAAGCGGTGAGTTTTGAATCACTTCTGAGGTGCTG
CTGAAAGGTGTTCTAGTGCTTGATTGACTGCGCTTTACTTTGCGCGCCAG
TTCGTGCCAGCAGCTCTAGACTATTACTGTTCTTGAATTTGAAATTTGGT
ACACGCGCTGCCCGTCCTCTTTGCCCCCAAGAATCGAGGTCCATTCCACC
ACGTCGATATCTTAAGCACAGAAAGCGCATTGAAAGTTGTACAGGTTTGG
TGACTGCTGTAACTGCTGCAATGACGCTGCTACCGTGGTGTTTATTTGTC
GCTCACTCAGACCCCGACTCCTCCAATAACTAGACTACTGATATGTTGCA
CGCAGGTTGCGGAGGAGCGTCGCTCTAGCGCGATGGATTTGATGCAGAAC
GACCCCGTGTTGATGGAGCGAGTACGGGCCATGCTGGATGCTGTCGCGGC
AGAGCAGGCAGCAGCTAAGGTGGCTGCGATCGACGCGGTCAACACTCGTG
CACTCTGCGCGTCGATGCAAGCGGTGAAGCAGCACTGCAACAGCTTGATA
GGGTNTGCTGGATGCTGGCGCGGCAGAGCAGGCAGCAGCTAAGGTGGCGG
CGATCGACGCGGCCAACACTCGTGCACTCCGCGCGTCGTTGCAAGCGCTG
AAGCAGCACTGCAACAGCTCGATAGGGTGGACCACTTACCAGACAGCGCT
CGCTGTAGCAGCCGGAGCGGGAGAGCACACGTGTACTGACACGGACGTGT
GCCACCCCGGCCAGCGGTGCAAGCCCGTTGAGTCTGGTGGAGTGAGCCTT
GCCGAGCGAGCCAACAGTCTCGGCATTCGGCACGAGACTTTCAGCGACGC
ACGGCGGCAGATGCACATTGTACAACACGAACCACGACATCGCCCCCAAG
ATCGCTGCGAGTGAGGGATGCTACGTGTACAACGAGCACAAGACACGGAG
TGACGTGACGAATCCCGGGAACAGAGGAGGAGCAGGGGGAGGTGCAGGAT
ACCTGAAGTCTTGTGTGGGGGTGCAGACAGACGATTTTGTGGTGGGAGCG
GCCGGAGACAAGGTGTTGACGGCTAGGAAGTGGGCGGTAGACGAGTCCAG
GGCGAGGAAATGGGCCGCCCGCAAAAAGTTCACCAGATCTTGGAAGTTGC
GGGTTCGGGGCGCATCGTGCTACTGCTCGACTTGCCGAATAGGCTGCTAC
GATGACTGCATGGTAGCGAAGGTGTACCCCGACTTGGTTGGCGAGGTGAT
GGAGTGTTCGTGTGTGCATGAGCGGATCAGAATATTCGAACGGGACTGTA
GTAAGTGGCCACGCGGATTGGAATTGATAGTCCCCTAGATTGGTTTCATG
GTTGATCCACGGGGCTCGGACCTGCGGGAGTGCTTGCTGTGTCGCGGCAC
TCTCTCTCTCCCGCCGCGTCCTGTTCGTGTCTGCTGTCCTCAATACCAGT
GATACTAACATGGAGAAGTCGNACTGTAGGAAGTGGCTACGCAGATTGGA
ATTGATAGTCCCCTGGGTTGGTTTCATGGTTGATCCACGGGGCTCGGACC
TGCGGGAGTGCTTGCTGTGTCGCGGCACTCTCTCTCTCCCGCCGCGTCCT
GTTCGTGTCTGCTGTCCTCAATACCAGTGATACTAACATGGAGAAGTCGG
GAAAAGAGATGGTTGGGAGACGCACGCTTGGGACTCAATTGACCGGCGTT
ATTCTTCCGGTCATATCTTCGGACGAGTCCCCAGTGGCGCCTACGCTTGA
CGAGAGCATGGGGGAGGTGGGTGGGGGAGGGGAGAAGGAAGATGAGGGAG
AGGAGGAGGACGATGAGGGGGAGGAGGAGGAGGAGGAGGAGGGGGAGGAG
GAGGGGGAGCGGGAGGAAGCGCAATACGTAAGCTCAAGAGGTCGCGTAAG
TATCGCGAAGAAGAGGTTCCCGGAGGTGGGCTAG
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Coding sequence (CDS) from alignment at Scaffold_548:193907..196340+

>EsuBft712_12a-0001 ID=EsuBft712_12a-0001|Name=EsuBft712_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1194bp|location=Sequence derived from alignment at Scaffold_548:193907..196340+ (Ectocarpus subulatus male Bft15b)
ATGCAGGTAGACCGCACAATCGAAATCCGAGGGGAAGAGAGGGTAGTGAG
ACAGCAGCGGAAGAATCACATCCGCGGGATACTGCTAATCAGCCAGCTGT
TGAGAAAGGGTACCACCGAGGCAGCTGGAAAACCTGTGCAATCTGTGGTT
GCTGATGAAGTTGAGCTCCTCGAAAAGGGTAGAGAGCACGTTGAAGGCAT
CCGAGAGAGAGCATCGAAACGCGGGAAACGACAGCCTGCTGCTGCTGCTG
CTGCTTCATCTGCTGCGGCGAAGAAGGCGAAGCGCAAGGGGGCGGACGCA
GCTCTCTCCGACCCTCTAGCATTGGCTCATGATGGCGGGACTAGACGTGG
TGCTACCTCAGATACTTCGCGGGAGGAAGCGGTTGCGGAGGAGCGTCGCT
CTAGCGCGATGGATTTGATGCAGAACGACCCCGTGTTGATGGAGCGAGTA
CGGGCCATGCTGGATGCTGTCGCGGCAGAGCAGGCAGCAGCTAAGGTGGC
TGCGATCGACGCGGTCAACACTCGTGCACTCTGCGCGTCGATGCAAGCGG
TGAAGCAGCACTGCAACAGCTTGATAGGATGCACATTGTACAACACGAAC
CACGACATCGCCCCCAAGATCGCTGCGAGTGAGGGATGCTACGTGTACAA
CGAGCACAAGACACGGAGTGACGTGACGAATCCCGGGAACAGAGGAGGAG
CAGGGGGAGGTGCAGGATACCTGAAGTCTTGTGTGGGGGTGCAGACAGAC
GATTTTGTGGTGGGAGCGGCCGGAGACAAGGTGTTGACGGCTAGGAAGTG
GGCGGTAGACGAGTCCAGGGCGAGGAAATGGGCCGCCCGCAAAAAGTTCA
CCAGATCTTGGAAGTTGCGGGTTCGGGGCGCATCGTGCTACTGCTCGACT
TGCCGAATAGGCTGCTACGATGACTGCATGGTAGCGAAGGTGTACCCCGA
CTTGGTTGGCGAGAAGTCGGGAAAAGAGATGGTTGGGAGACGCACGCTTG
GGACTCAATTGACCGGCGTTATTCTTCCGGTCATATCTTCGGACGAGTCC
CCAGTGGCGCCTACGCTTGACGAGAGCATGGGGGAGGAGGAGGAGGAGGA
GGGGGAGGAGGAGGGGGAGCGGGAGGAAGCGCAATACGTAAGCTCAAGAG
GTCGCGTAAGTATCGCGAAGAAGAGGTTCCCGGAGGTGGGCTAG
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