EsuBft712_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft712_10a-0001
Unique NameEsuBft712_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_548contigScaffold_548:208191..209569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LJR1
ProteomeIdEsuBft712_10
Protein domainsPTHR12217
Ownerapollo_admin@sb-roscoff.fr
Noteeukaryotic translation initiation factor 2d os:homo sapiens gn:eif2d pe:1 sv:3 [Automatic annotation]
Nb exon2
Max annot lvl2759|Eukaryota
Length402
Evalue1.31e-50
EggNOG OGsCOG2016@1|root,KOG2522@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K15027
GOsGO:0001731,GO:0002181,GO:0002183,GO:0002190,GO:0002192,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006413,GO:0006518,GO:0006725,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0046483,GO:0065003,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0110017,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Descriptionformation of translation preinitiation complex
COG categoryJ
BRITEko00000,ko03012
Cross References
External references for this mRNA
DatabaseAccession
GO0043229
GO0006413
GO0003723
GO0005737
GO0071826
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft712_10aEsuBft712_10aEctocarpus subulatus male Bft15bgeneScaffold_548 208191..209569 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft712_10a-0001-exonagat-exon-61691Ectocarpus subulatus male Bft15bexonScaffold_548 208191..208379 -
EsuBft712_10a-0001-exonEsuBft712_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_548 209357..209569 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft712_10a-0001-cdsEsuBft712_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_548 208191..208379 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft712_10a-0001-exonagat-five_prime_utr-13172Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_548 209498..209569 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft712_10a-0001EsuBft712_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_548 208191..209497 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft712_10a-0001 ID=EsuBft712_10a-0001|Name=EsuBft712_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=402bp|location=Sequence derived from alignment at Scaffold_548:208191..209569- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTCGCAACCTCGCAGCTTTGCACGGTACAAGCTGCATTTTCATTGCACAC
CGCTGTATGCGTACGACGCACAATGTTTCGAAAGAAGCAAGACGTGGCTG
AGCGGAGCCGGAGCCTGCTCAAGAACAGCGCAGCGAAGAAGATTAAAGTG
GAAATTGTTTCGGCGCTCCCTCTGCTGACCAGAGAGATCATCGATGAGCT
GATGCCCAGCAAGGATGGCATAGAGGTGGTCAAGCTCGCCACCCGCGCCC
TGGTGTACTTCCACGTCCCCACCAAGACCCCCCTCTTCTTCGACTCCGAC
GGCCGCAACAACCTCTTCCCCACCGTGTACGCCCTGTGGAGGGTCGGGAA
ATTGAAACCGACAACGCCAGGAGAGGCGGCGGCGGCGGGAGGGGGGGGNN
NN
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protein sequence of EsuBft712_10a-0001

>EsuBft712_10 ID=EsuBft712_10|Name=EsuBft712_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=110bp
MFRKKQDVAERSRSLLKNSAAKKIKVEIVSALPLLTREIIDELMPSKDGI
EVVKLATRALVYFHVPTKTPLFFDSDGRNNLFPTVYALWRVGKLKPTTPG
EAAAAGGGGX
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mRNA from alignment at Scaffold_548:208191..209569-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft712_10a-0001 ID=EsuBft712_10a-0001|Name=EsuBft712_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1379bp|location=Sequence derived from alignment at Scaffold_548:208191..209569- (Ectocarpus subulatus male Bft15b)
CTCGCAACCTCGCAGCTTTGCACGGTACAAGCTGCATTTTCATTGCACAC
CGCTGTATGCGTACGACGCACAATGTTTCGAAAGAAGCAAGACGTGGCTG
AGCGGAGCCGGAGCCTGCTCAAGAACAGCGCAGCGAAGAAGATTAAAGTG
GAAATTGTTTCGGCGCTCCCTCTGCTGACCAGAGAGATCATCGATGAGCT
GATGCCCAGCAAGGTAGGAATAAAGTATCATGCTCCCTAATCGTGCGAGG
ACCAAGTTGTTGCAGTGACGGAAAAGGGTGGTGCACAACCTAGCCTCACT
ACTGCTGCTATGCACGGGATAAGTGCAATGCTGCAAGATGTAGATTGACC
GAGCTGGACTTTGCGCAAGAAACCTGTTGACTTTGTTATCTATCCGCAAG
CGCTGTGTGGCCTCTCTGACTGTTTCATGTATCGTAACAATCGGGCGGTG
TGCTCCTTCTTCACTTGCCGCATTGGCAGAAATGCCGGCTTTGTTTGCCT
CTCCCCTGCCCACTCCCCCTTTTGGTTGCCACCACAAAATACTGCTTGTT
GTTGAAATATTATTTTTGGTACAGGTCGGTGCGTCACTACTGCTGTATCT
CACAAATAACGTCACTAGCTTGCCGGATCGCACGCCGCCGCAGCCGACAG
CTGACCTTATCAGCATCCAAGCAGAGCTTTACGGCTCCAAAGCTTGCCCT
GGCTTAGATCAATTTCTTTTGGGTCGGTCGTACCTGTACGACAACTGCTG
CTCCCCGGCTCCTCCAAGCACGAGAAGGAGAAGCAGGGCCGACGACGAGT
CGAATGGGGCGGGGGGTGCTATTATGTCTTGCATGCCGTAAGGGTTAGAC
CAATGACCCACGCGTCCTCGAGAGGACGGAGTATTGTTCCCACAGGACCG
ATCAAGTGCGGCCAATCGTTCCGACGTGTCGAGCGGGGGCGGGATCATTC
GACGATCGATTTATAGTACGCGAAGAAACGTCTGGTTCGGTATGTGGTCG
AACCCGCAGCACGCAGCCCCGTGTGTCCATTGCACGAAGTCTGGAATGAA
GATCCCCCCCGCCCCTCCAACCCGGCTGATCGCGCCGTCCCGGTATTGTA
AGGATGCGAGGTCAAAGGTCTAACGATTACGGCATGCGTTTACATGGGCA
CACCCTCCTCGCCCATTCCGGCGTCATTTCGTCTCCTTAGGATGGCATAG
AGGTGGTCAAGCTCGCCACCCGCGCCCTGGTGTACTTCCACGTCCCCACC
AAGACCCCCCTCTTCTTCGACTCCGACGGCCGCAACAACCTCTTCCCCAC
CGTGTACGCCCTGTGGAGGGTCGGGAAATTGAAACCGACAACGCCAGGAG
AGGCGGCGGCGGCGGGAGGGGGGGGNNNN
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Coding sequence (CDS) from alignment at Scaffold_548:208191..209569-

>EsuBft712_10a-0001 ID=EsuBft712_10a-0001|Name=EsuBft712_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=330bp|location=Sequence derived from alignment at Scaffold_548:208191..209569- (Ectocarpus subulatus male Bft15b)
ATGTTTCGAAAGAAGCAAGACGTGGCTGAGCGGAGCCGGAGCCTGCTCAA
GAACAGCGCAGCGAAGAAGATTAAAGTGGAAATTGTTTCGGCGCTCCCTC
TGCTGACCAGAGAGATCATCGATGAGCTGATGCCCAGCAAGGATGGCATA
GAGGTGGTCAAGCTCGCCACCCGCGCCCTGGTGTACTTCCACGTCCCCAC
CAAGACCCCCCTCTTCTTCGACTCCGACGGCCGCAACAACCTCTTCCCCA
CCGTGTACGCCCTGTGGAGGGTCGGGAAATTGAAACCGACAACGCCAGGA
GAGGCGGCGGCGGCGGGAGGGGGGGGNNNN
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