EsuBft687_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft687_10a-0001
Unique Name	EsuBft687_10a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_242	contig	Scaffold_242:195486..198867 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft687_10
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Length	229
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft687_10a	EsuBft687_10a	Ectocarpus subulatus male Bft15b	gene	Scaffold_242 195486..198867 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft687_10a-0001	EsuBft687_10	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_242 195550..197061 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft687_10a-0001-exon	agat-exon-82381	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 195486..195570 +
EsuBft687_10a-0001-exon	EsuBft687_10a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 195923..196063 +
EsuBft687_10a-0001-exon	agat-exon-82382	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 196795..198867 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft687_10a-0001-exon	agat-five_prime_utr-12943	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_242 195486..195549 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft687_10a-0001-cds	EsuBft687_10a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_242 195550..195570 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft687_10a-0001-exon	agat-three_prime_utr-20257	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_242 197062..198867 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_242:195486..198867+
coding sequence from alignment at Scaffold_242:195486..198867+

spliced messenger RNA

>EsuBft687_10a-0001 ID=EsuBft687_10a-0001|Name=EsuBft687_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2299bp|location=Sequence derived from alignment at Scaffold_242:195486..198867+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCAGCAGCACCAGCAGCAGTTGCTGCAGCAACCGTGGGGTGATCTGTTCG
GCAATTACAGCTTCATGGCCGACGACACGAATCTTAGCCAACCCCTGCCA
CGAAGCCCCCGAACCGAGGCGGTTTCCACGGGACAAGAGTCCCCAAACGG
GTGGGCAGGCCTCGGCAGCCAACGCCAGGTCTCGCAAATGCAGCCCTTGC
TCATGTCTTCGGCTGGGATGTCGCAGCTGCAAGGCCGGACGCTAGTTGGG
GGTGCTGCAAACATGGGCAGTCATTGCCGGAGCAGCATGAGCAGCACCAC
CGGCCTACCATCGTTGTCGCCATTGTCGTCGGCACCATCACAAGCCAGTG
GTGGACCGTCGTCTCCGCGGCAGCGCCAAAGCCAACGCCTTGTGATAGAC
CAGGCCCCCGGTGCTTCTCCTAGACCTCAATCTTCACCGCTGGGGAGCGA
GAGCCATGAGAGACAAGAACAGGGAATGGTCTATGATATCTGAACCGCCC
TTGACTCGTCTGCCTCACGTGTGACATACTTGTGTGGATGGTGACAATCC
TTACAAAACCGGCCGCCCCTTGTGTCTTGTGTCGAGCGGGATCGTCTCGT
CGTCCATTTACTCCGTCTCTTCGTGCGTTGTGTTTTATTCTGTCTCCAAA
GGGGAGACACATTTTGGCATGCTGTTGTTTGTCTGACACCAGCTGCCACC
GAGACAGTGCGACCGACAGTCGAGCTGGGGTTGATTTGTTTCTATAGCTG
AAACGGCGTGTCCTTACCCCCGGCTACGTCCTGTGCTTGTAAATTTTCGT
GTTTCTCGTGGTTTGTTCCGGCGTGTCTTGTGCCACCTAAATCGCGGGTT
GACATGGGTTTAGTGTATTTTTACTACGGTACTTGTTATCTTCTTGTGGC
TTGAGGCGCGCGGCCCGAATGGGACGATTTTTGCGGTTTGCTGCTTTGCA
TTCCACCTACTCGGGGGCAGTGTAGCCATCCTTTTCGTAGTCGTCAACTT
GAATAGTTTTGGTAGGAGCGGGTGCTGATGGCGAGGTTGCTCCACTACTC
TCGCATCGCCTTGTACAGGACGACGGGTTGTAGAATTTTCGTGTGGAGCC
TCTCGGGGACGCGAAGTTGGGTGTGAACGGTGCACCCAGGTTACGTGATC
GTTCCAAAAACTTCTGGTAGTGGTGACGGGGGACAGCCTTAGCCTGCTAC
TCTCCTGTACACCTGTACATCGCGCGCTTCGATTAGCAAGACGTTCAACT
ATTATTTTTGGCGGCGTTCAGGGCTACGACGTAGAGCGATTGCTACCACG
TGGATATGACGCCCTGGAGTAGTAGGCCACGACCAATACAAACGTCCGTG
AGTTTTCTTGCGCCTCTGTAGAGATCTTCGTTTCACAGGTAGATATACCG
AGTTGAGCTTCCCCGCGGGCTTGTTTTGTTGAAGGAACAAAGGGGGGGGG
TGGTGAGCAAGGGTATTCTCATGATACTGGCTGCTTTGAAACTTGGCAGC
GAGCCGTGGACGGGGCTTGGCAACTACATGTGCGGCTGCAAAGAATATGT
GTAGCAAGGATTGCACCGTGTTGCGTATCGGCTCGATGCTTGATGCTTGA
TGATTGAGGTTTGTCACCCCATGCCCCTCCACCTGCGAGGTGGCGACATC
CAGTCGTTCCACACTAAGGGAAAGCTATCGAAGCCAGCGTGTGTGTTTTC
GGAAGAAATTCGACTGGTGGTGTCGATTTACGAACACCGTGAAACTCCAT
CTTCAGGAAAGAGTCGGTGGGGCGAATCGGATGTAGAGTAGGGCGAGCGA
GGTGCGGGCATCATATAAGAGGCACGCACGTGGTCATGTATGGACATCAT
GGGAAAAAGTAGCGGTTATGCACAGTGTCTGTTTCAGCGTCGTGCTTAGT
TTCTAGTAGATATCATGACAGGGTTCGTTGCCGGGGTTTGGTTGAAGTGG
CCACTGAAATTAACAACACTGGACGGCAGTATTCGACTGCTTTTTTTTCC
GTAGCCGACATCCTTGCCTTGTACAAGGGATGGCAGAGGTCGGTCTCTTG
TCCCGCCTATTTTCAGCAAGGTGCTCGTTTGTTGCGTTTCTGGAGCATTT
TTCTTCTTCATTTTTGCTAGAGGATTAGATGACTCGAGTTTGTTGTACGA
TAAAGAGCTGCCAGTAGAATTTTCGCCAGCTGACAAGGTTGGTTGGAACG
TTTGGGTGATCGTTTCCGTTTGGTGCGCAGGAGAAGAAATGCGAGGGTAT
GGGAAATAGAGCGAACACCCTTAATGAAACTTCTGCAACTGGGGTGATT

protein sequence of EsuBft687_10a-0001

>EsuBft687_10 ID=EsuBft687_10|Name=EsuBft687_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=142bp
MADDTNLSQPLPRSPRTEAVSTGQESPNGWAGLGSQRQVSQMQPLLMSSA
GMSQLQGRTLVGGAANMGSHCRSSMSSTTGLPSLSPLSSAPSQASGGPSS
PRQRQSQRLVIDQAPGASPRPQSSPLGSESHERQEQGMVYDI

mRNA from alignment at Scaffold_242:195486..198867+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft687_10a-0001 ID=EsuBft687_10a-0001|Name=EsuBft687_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3382bp|location=Sequence derived from alignment at Scaffold_242:195486..198867+ (Ectocarpus subulatus male Bft15b)
CCAGCAGCACCAGCAGCAGTTGCTGCAGCAACCGTGGGGTGATCTGTTCG
GCAATTACAGCTTCATGGCCGACGACACGAATCTTGTGAGCACTTTTTCA
CAATCCTCGACCATCAGCATCCCGCGTTGGTCACATCGCACAAGCGTGCC
ATCCAAGCCATTCGCACTCCGCATTAACAAAGCCCTGCAGGCTTGTATCC
AACCATCGTGCTTGGACAGAAAACGATCTTTCTTCCTCGGAATACGCCCG
AAAATGTGGAGGTGTTTGCATGGTGGGATAACAACGTGCTCTTGAGCGCA
CACGATTGACCTCCCGAAACGTATCAACCGCAGAACGACCCAGATATTAA
AATGTGCTCGCGGCCTTTATCAGCACGAAGTCTCGCGTTTCATTCCTCGA
TGACCCCCCACCCCCTCCCCCGATCCTACGCGAGCAGAGCCAACCCCTGC
CACGAAGCCCCCGAACCGAGGCGGTTTCCACGGGACAAGAGTCCCCAAAC
GGGTGGGCAGGCCTCGGCAGCCAACGCCAGGTCTCGCAAATGCAGCCCTT
GCTCATGTCTTCGGCTGGGATGTCGCAGGTAATCAATGCATCAACGGGCT
GTATGGTGGCGTTGGCCCCGGATCCTTGTTCTCTCGTCGGGACTTGCACA
CCCGGAATTGGGCTTTGGAACAACGGCAACGAGGCACAGCCCACAGGGAT
TCAGACACCGCAATTTGGTTCACGTGGTGTTTCCAGCAAGCGGTGTTCCC
AGCTGTAAATTGTTTTCGCGGATGTATATGGGACGGGTTGCTGTGGATGA
GCACCGCTGTACGGAGCGGCCATGTGGTTCATGTGACCTTGACAGCGCAG
TAGAAAACGTGGTACACGTGCTACTGGGATGAAATGCTCTCGAACATAGC
TTCGTGTGTTTGTGGAGTACGCAACGGGTCTGGCAACTTCCAATCCTCTC
CGTTTTGGTTCAGAACCTGCAACCATGTGCAGCGTGCCTGGTGGTTCCAC
AGCCTCCTTGCCGGCGTCTGTTGCGCGCGTCTATTCGTGGTTGTATACTT
TTATTTTTTGCCTCTGGCTTGGGTTCCACAGTGGCGCTGCGATGTTGTAT
TTGATCGCTTGAAGAGCCACCTGATGTGCCGAGAGACTCGTACTCGTAGC
AGGCGAAGTCCTAAGGTCTCCCGCCCTCGAGTGGAATCCTCTGTTTCAAG
ACGTAGGGCACCCGTGAACACGTTCTGTGCCCCAACATAACTGGCCCCCC
TGGTTCCACTCCCACAGTTGCCCATGCACGTTGTTTGCCCTCTTCAACCC
CCCCGAAAGCTGCAAGGCCGGACGCTAGTTGGGGGTGCTGCAAACATGGG
CAGTCATTGCCGGAGCAGCATGAGCAGCACCACCGGCCTACCATCGTTGT
CGCCATTGTCGTCGGCACCATCACAAGCCAGTGGTGGACCGTCGTCTCCG
CGGCAGCGCCAAAGCCAACGCCTTGTGATAGACCAGGCCCCCGGTGCTTC
TCCTAGACCTCAATCTTCACCGCTGGGGAGCGAGAGCCATGAGAGACAAG
AACAGGGAATGGTCTATGATATCTGAACCGCCCTTGACTCGTCTGCCTCA
CGTGTGACATACTTGTGTGGATGGTGACAATCCTTACAAAACCGGCCGCC
CCTTGTGTCTTGTGTCGAGCGGGATCGTCTCGTCGTCCATTTACTCCGTC
TCTTCGTGCGTTGTGTTTTATTCTGTCTCCAAAGGGGAGACACATTTTGG
CATGCTGTTGTTTGTCTGACACCAGCTGCCACCGAGACAGTGCGACCGAC
AGTCGAGCTGGGGTTGATTTGTTTCTATAGCTGAAACGGCGTGTCCTTAC
CCCCGGCTACGTCCTGTGCTTGTAAATTTTCGTGTTTCTCGTGGTTTGTT
CCGGCGTGTCTTGTGCCACCTAAATCGCGGGTTGACATGGGTTTAGTGTA
TTTTTACTACGGTACTTGTTATCTTCTTGTGGCTTGAGGCGCGCGGCCCG
AATGGGACGATTTTTGCGGTTTGCTGCTTTGCATTCCACCTACTCGGGGG
CAGTGTAGCCATCCTTTTCGTAGTCGTCAACTTGAATAGTTTTGGTAGGA
GCGGGTGCTGATGGCGAGGTTGCTCCACTACTCTCGCATCGCCTTGTACA
GGACGACGGGTTGTAGAATTTTCGTGTGGAGCCTCTCGGGGACGCGAAGT
TGGGTGTGAACGGTGCACCCAGGTTACGTGATCGTTCCAAAAACTTCTGG
TAGTGGTGACGGGGGACAGCCTTAGCCTGCTACTCTCCTGTACACCTGTA
CATCGCGCGCTTCGATTAGCAAGACGTTCAACTATTATTTTTGGCGGCGT
TCAGGGCTACGACGTAGAGCGATTGCTACCACGTGGATATGACGCCCTGG
AGTAGTAGGCCACGACCAATACAAACGTCCGTGAGTTTTCTTGCGCCTCT
GTAGAGATCTTCGTTTCACAGGTAGATATACCGAGTTGAGCTTCCCCGCG
GGCTTGTTTTGTTGAAGGAACAAAGGGGGGGGGTGGTGAGCAAGGGTATT
CTCATGATACTGGCTGCTTTGAAACTTGGCAGCGAGCCGTGGACGGGGCT
TGGCAACTACATGTGCGGCTGCAAAGAATATGTGTAGCAAGGATTGCACC
GTGTTGCGTATCGGCTCGATGCTTGATGCTTGATGATTGAGGTTTGTCAC
CCCATGCCCCTCCACCTGCGAGGTGGCGACATCCAGTCGTTCCACACTAA
GGGAAAGCTATCGAAGCCAGCGTGTGTGTTTTCGGAAGAAATTCGACTGG
TGGTGTCGATTTACGAACACCGTGAAACTCCATCTTCAGGAAAGAGTCGG
TGGGGCGAATCGGATGTAGAGTAGGGCGAGCGAGGTGCGGGCATCATATA
AGAGGCACGCACGTGGTCATGTATGGACATCATGGGAAAAAGTAGCGGTT
ATGCACAGTGTCTGTTTCAGCGTCGTGCTTAGTTTCTAGTAGATATCATG
ACAGGGTTCGTTGCCGGGGTTTGGTTGAAGTGGCCACTGAAATTAACAAC
ACTGGACGGCAGTATTCGACTGCTTTTTTTTCCGTAGCCGACATCCTTGC
CTTGTACAAGGGATGGCAGAGGTCGGTCTCTTGTCCCGCCTATTTTCAGC
AAGGTGCTCGTTTGTTGCGTTTCTGGAGCATTTTTCTTCTTCATTTTTGC
TAGAGGATTAGATGACTCGAGTTTGTTGTACGATAAAGAGCTGCCAGTAG
AATTTTCGCCAGCTGACAAGGTTGGTTGGAACGTTTGGGTGATCGTTTCC
GTTTGGTGCGCAGGAGAAGAAATGCGAGGGTATGGGAAATAGAGCGAACA
CCCTTAATGAAACTTCTGCAACTGGGGTGATT

Coding sequence (CDS) from alignment at Scaffold_242:195486..198867+

>EsuBft687_10a-0001 ID=EsuBft687_10a-0001|Name=EsuBft687_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=429bp|location=Sequence derived from alignment at Scaffold_242:195486..198867+ (Ectocarpus subulatus male Bft15b)
ATGGCCGACGACACGAATCTTAGCCAACCCCTGCCACGAAGCCCCCGAAC
CGAGGCGGTTTCCACGGGACAAGAGTCCCCAAACGGGTGGGCAGGCCTCG
GCAGCCAACGCCAGGTCTCGCAAATGCAGCCCTTGCTCATGTCTTCGGCT
GGGATGTCGCAGCTGCAAGGCCGGACGCTAGTTGGGGGTGCTGCAAACAT
GGGCAGTCATTGCCGGAGCAGCATGAGCAGCACCACCGGCCTACCATCGT
TGTCGCCATTGTCGTCGGCACCATCACAAGCCAGTGGTGGACCGTCGTCT
CCGCGGCAGCGCCAAAGCCAACGCCTTGTGATAGACCAGGCCCCCGGTGC
TTCTCCTAGACCTCAATCTTCACCGCTGGGGAGCGAGAGCCATGAGAGAC
AAGAACAGGGAATGGTCTATGATATCTGA