EsuBft685_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft685_10a-0001
Unique NameEsuBft685_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_233contigScaffold_233:417538..418296 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft685_10
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length53
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft685_10aEsuBft685_10aEctocarpus subulatus male Bft15bgeneScaffold_233 417538..418296 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft685_10a-0001EsuBft685_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_233 417970..418296 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft685_10a-0001-exonagat-exon-7547Ectocarpus subulatus male Bft15bexonScaffold_233 417538..417567 -
EsuBft685_10a-0001-exonEsuBft685_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_233 417640..417659 -
EsuBft685_10a-0001-exonagat-exon-7548Ectocarpus subulatus male Bft15bexonScaffold_233 417814..418296 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft685_10a-0001-exonagat-three_prime_utr-20237Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_233 417538..417567 -
EsuBft685_10a-0001-exonagat-three_prime_utr-20238Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_233 417640..417659 -
EsuBft685_10a-0001-exonagat-three_prime_utr-20239Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_233 417814..417969 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft685_10a-0001-cdsEsuBft685_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_233 417970..418296 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft685_10a-0001 ID=EsuBft685_10a-0001|Name=EsuBft685_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=533bp|location=Sequence derived from alignment at Scaffold_233:417538..418296- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGACAGGGTTGCTGTCGCTGTGTGCGGGGATCGTGAATTTCAACA
TCTTCTTCATCAGGGCTTGTTTCGAGCCCTGCGACTCCGGGTTGTGTACT
TTGTCGAGTTCCGCAAGAATTTCCTTTGCGGTCTCGCATTTGTTCACGAT
TGCCTTGTCGGCTTCTCGGACGATGGCTGTAGTCACAAAGTGGAACGCCT
GGAGGCCCCTCTGAACCTCATCACTTGTGTAGCCCNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGAGTGATGTTGGATAGTGCC
GGACACATAGACGCTGTGAGGGAGGAAAGACAAATACGGAAACCTCACAG
GTGATTTGTATTGGAGATTGCCGGACACCCAGACGTGTTGAGTGAAGATA
CCTGCATACTGAAACCGCAAAGATGGATTGGTTATTGCCGGACACCCAGA
CGTACGCGCTGCGTGGGGATAGCTACATGCTGA
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protein sequence of EsuBft685_10a-0001

>EsuBft685_10 ID=EsuBft685_10|Name=EsuBft685_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=109bp
MLDRVAVAVCGDREFQHLLHQGLFRALRLRVVYFVEFRKNFLCGLAFVHD
CLVGFSDDGCSHKVERLEAPLNLITCVAXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXX
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mRNA from alignment at Scaffold_233:417538..418296-

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft685_10a-0001 ID=EsuBft685_10a-0001|Name=EsuBft685_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=759bp|location=Sequence derived from alignment at Scaffold_233:417538..418296- (Ectocarpus subulatus male Bft15b)
ATGCTCGACAGGGTTGCTGTCGCTGTGTGCGGGGATCGTGAATTTCAACA
TCTTCTTCATCAGGGCTTGTTTCGAGCCCTGCGACTCCGGGTTGTGTACT
TTGTCGAGTTCCGCAAGAATTTCCTTTGCGGTCTCGCATTTGTTCACGAT
TGCCTTGTCGGCTTCTCGGACGATGGCTGTAGTCACAAAGTGGAACGCCT
GGAGGCCCCTCTGAACCTCATCACTTGTGTAGCCCNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGAGTGATGTTGGATAGTGCC
GGACACATAGACGCTGTGAGGGAGGAAAGACAAATACGGAAACCTCACAG
GTGATTTGTATTGGAGATTGCCGGACACCCAGACGTGTTGAGTGAAGATA
CCTGCATACTGAAACCGCAAAGATGGATTGGTTGTTGATTTTGCCAGATA
CAGTCTAGACGCGCTGCGTGGGGATAGCTACATGCTGAAACCTCACGAGT
TGAGTGATGTTGGATAGTGCCGGACACATAGACGCTGTGAGGGAGGAAAG
ACAAATACGGAAACCTCACAGGTGATTTGTATTGGAGATTGCCGGACACC
CAGACGTGTTGAGTGAAGATACCTGCATACTGAAACCGCAAAGATGGATT
GGTTGTTTAGCTTGCCAGATACAGTCTAGACGCGCTGCGTGGGGATAGCT
ACATGCTGA
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Coding sequence (CDS) from alignment at Scaffold_233:417538..418296-

>EsuBft685_10a-0001 ID=EsuBft685_10a-0001|Name=EsuBft685_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=327bp|location=Sequence derived from alignment at Scaffold_233:417538..418296- (Ectocarpus subulatus male Bft15b)
ATGCTCGACAGGGTTGCTGTCGCTGTGTGCGGGGATCGTGAATTTCAACA
TCTTCTTCATCAGGGCTTGTTTCGAGCCCTGCGACTCCGGGTTGTGTACT
TTGTCGAGTTCCGCAAGAATTTCCTTTGCGGTCTCGCATTTGTTCACGAT
TGCCTTGTCGGCTTCTCGGACGATGGCTGTAGTCACAAAGTGGAACGCCT
GGAGGCCCCTCTGAACCTCATCACTTGTGTAGCCCNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNN
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