EsuBft6842_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft6842_2a-0001
Unique NameEsuBft6842_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_211contigScaffold_211:29856..31006 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FX04
ProteomeIdEsuBft6842_2
Protein domainsSignalP-noTM
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length62
Hectar predicted targeting categorysignal peptide
Evalue1.69e-11
EggNOG OGs2D0T2@1|root,2SFBV@2759|Eukaryota
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_000440.1
Date last modified2016-06-14
Date creation2016-06-14
DescriptionDOMON domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft6842_2aEsuBft6842_2aEctocarpus subulatus male Bft15bgeneScaffold_211 29856..31006 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft6842_2a-0001-exonagat-exon-88698Ectocarpus subulatus male Bft15bexonScaffold_211 29856..30181 -
EsuBft6842_2a-0001-exonEsuBft6842_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_211 30225..30372 -
EsuBft6842_2a-0001-exonagat-exon-88697Ectocarpus subulatus male Bft15bexonScaffold_211 30728..30863 -
EsuBft6842_2a-0001-exonagat-exon-88696Ectocarpus subulatus male Bft15bexonScaffold_211 30993..31006 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft6842_2a-0001-cdsEsuBft6842_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_211 29856..30181 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft6842_2a-0001EsuBft6842_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_211 29856..31006 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft6842_2a-0001 ID=EsuBft6842_2a-0001|Name=EsuBft6842_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=624bp|location=Sequence derived from alignment at Scaffold_211:29856..31006- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTACTGCTTGTCGTGGCGGGGGTGCACACAAGGCTGGTGCTCCTGTG
GCAGAACAACGCCGAGGCCGATCGCTATTGCACGGACGAACCCACAGCTG
TGCAGGTCAGCGTGGACAGGCGCCGCGCAACTCTGACGGCTATCTGCATG
GCTAAAGTGAACGGGCTGTTGGAGGTCACAGCTCTGATAAGTGGTGATGT
CACCCGTTGCAACATCCCCGGTAACACCTTCCGCCGCGCCATTGCCCGGC
TCATGTCGAAGGGGGCCACCGCGGGCCTCGTCTCGGGGCGAGCGAGAGAG
CAGGCCGCCGCCGCCTTGCCGGCCAACCTGCCCCACCTCCGGTCCGTCGG
CGAGCTGTCGCGCGTTTCGGAGAGAGACCCGACCCACACCCGATGGAGCA
AGAGACCCCATAGCCTTGGTTTGTTTACCAGCGGCGTCAGCAGGGACCTG
GGGGCCGGTGCGGTGGCGAAGACCTTAGTCGCGAAAACTATATCGGTGAC
GATGTTCCGCGGTCCGCGAGCGACGCCGCCGCCGACACGGGTAAAGCTGG
GAGGCACCGTCAGCAAGGACATGGCAGCGGCGGCGGCGGCGGCGGGCACA
GCCGAAGGTTATTTGTTCGAGTAG
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protein sequence of EsuBft6842_2a-0001

>EsuBft6842_2 ID=EsuBft6842_2|Name=EsuBft6842_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=207bp
MLLLVVAGVHTRLVLLWQNNAEADRYCTDEPTAVQVSVDRRRATLTAICM
AKVNGLLEVTALISGDVTRCNIPGNTFRRAIARLMSKGATAGLVSGRARE
QAAAALPANLPHLRSVGELSRVSERDPTHTRWSKRPHSLGLFTSGVSRDL
GAGAVAKTLVAKTISVTMFRGPRATPPPTRVKLGGTVSKDMAAAAAAAGT
AEGYLFE
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mRNA from alignment at Scaffold_211:29856..31006-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft6842_2a-0001 ID=EsuBft6842_2a-0001|Name=EsuBft6842_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1151bp|location=Sequence derived from alignment at Scaffold_211:29856..31006- (Ectocarpus subulatus male Bft15b)
ATGTTACTGCTTGTGTAAAAAAGCGGCCTGAAGTTTTGTTCTTCCTCACG
GCCCGGGAGACCTTCGTATTGTCGTGCTGGTTCCCCTTGCATTTCTTGCT
TGCCCTCATCTGCGCACGAATACACCCGCCGAAGTCACAGCAGCGTGGCG
GGGGTGCACACAAGGCTGGTGCTCCTGTGGCAGAACAACGCCGAGGCCGA
TCGCTATTGCACGGACGAACCCACAGCTGTGCAGGTCAGCGTGGACAGGC
GCCGCGCAACTCTGACGGCTATCTGCATGGTGATGTCCACGAAAACTCGT
CGCCAGAATTGACCCAAAGTACACGAGCTCACCTTAGTCTCGTGGCACTG
ATTGGCGCTGGAAAAGCCCCACGCCGCTTCCCGCACAAGCCCCTCTCTCC
TGCTGGAGTTTTCTCGGTTTTCGCGGAGCAGCAGTCGACCGACCCAAGGG
TTTTTTTGGCGTGGGTTGTCTACCCCATTGCACAACTGTCGCGGGACCTG
TGCGTGTCCCTCGGAAACCATCTGCGGAATCGATCACAACTTGCGCTTGC
CTGCCTATAGCATTGTTTCAGTTTGCTCTTGTGAGTAAATCTGCACAAAA
CTAGCAAAGTCGCTACCCCACCACCGAACAACAGGCTAAAGTGAACGGGC
TGTTGGAGGTCACAGCTCTGATAAGTGGTGATGTCACCCGTTGCAACATC
CCCGGTAACACCTTCCGCCGCGCCATTGCCCGGCTCATGTCGAAGGGGGC
CACCGCGGGCCTCGTCTCGGGGCGAGCGAGAGGTCGACAGCGACACAAAG
GGCCCCAAACACGACGACACCGCAGAGCAGGCCGCCGCCGCCTTGCCGGC
CAACCTGCCCCACCTCCGGTCCGTCGGCGAGCTGTCGCGCGTTTCGGAGA
GAGACCCGACCCACACCCGATGGAGCAAGAGACCCCATAGCCTTGGTTTG
TTTACCAGCGGCGTCAGCAGGGACCTGGGGGCCGGTGCGGTGGCGAAGAC
CTTAGTCGCGAAAACTATATCGGTGACGATGTTCCGCGGTCCGCGAGCGA
CGCCGCCGCCGACACGGGTAAAGCTGGGAGGCACCGTCAGCAAGGACATG
GCAGCGGCGGCGGCGGCGGCGGGCACAGCCGAAGGTTATTTGTTCGAGTA
G
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Coding sequence (CDS) from alignment at Scaffold_211:29856..31006-

>EsuBft6842_2a-0001 ID=EsuBft6842_2a-0001|Name=EsuBft6842_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=624bp|location=Sequence derived from alignment at Scaffold_211:29856..31006- (Ectocarpus subulatus male Bft15b)
ATGTTACTGCTTGTCGTGGCGGGGGTGCACACAAGGCTGGTGCTCCTGTG
GCAGAACAACGCCGAGGCCGATCGCTATTGCACGGACGAACCCACAGCTG
TGCAGGTCAGCGTGGACAGGCGCCGCGCAACTCTGACGGCTATCTGCATG
GCTAAAGTGAACGGGCTGTTGGAGGTCACAGCTCTGATAAGTGGTGATGT
CACCCGTTGCAACATCCCCGGTAACACCTTCCGCCGCGCCATTGCCCGGC
TCATGTCGAAGGGGGCCACCGCGGGCCTCGTCTCGGGGCGAGCGAGAGAG
CAGGCCGCCGCCGCCTTGCCGGCCAACCTGCCCCACCTCCGGTCCGTCGG
CGAGCTGTCGCGCGTTTCGGAGAGAGACCCGACCCACACCCGATGGAGCA
AGAGACCCCATAGCCTTGGTTTGTTTACCAGCGGCGTCAGCAGGGACCTG
GGGGCCGGTGCGGTGGCGAAGACCTTAGTCGCGAAAACTATATCGGTGAC
GATGTTCCGCGGTCCGCGAGCGACGCCGCCGCCGACACGGGTAAAGCTGG
GAGGCACCGTCAGCAAGGACATGGCAGCGGCGGCGGCGGCGGCGGGCACA
GCCGAAGGTTATTTGTTCGAGTAG
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