Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LCF7 |
| ProteomeId | EsuBft663_10 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Max annot lvl | 2759|Eukaryota |
| Length | 167 |
| Hectar predicted targeting category | other localisation |
| Evalue | 3.02e-179 |
| EggNOG OGs | 2EY0B@1|root,2SZK0@2759|Eukaryota |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-26_004840.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Neurochondrin |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft663_10a-0001 ID=EsuBft663_10a-0001|Name=EsuBft663_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1673bp|location=Sequence derived from alignment at Scaffold_189:174683..176355- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ACGCCTTCGACCCACCTTTTGAAAATATTGCCCGATGTTCTGGAAGCCCC
CTGACTCGGACGATGAGGAGAGCTACGACGACGACGACGACGACGACACG
TCGGCGACCGTGACGCCAACGCTGGCGGCCTTCCCGGGAGCCGCCCGATA
CCTGGCCGGCGGCGCTCGGGCGGGCCACGCCGCGTCGGCGTCGTCCGTTA
CGCGGCCGGACGAGGCCCTCCACAACATCTTGCGTGCGATGCTGGCGCTC
TCGTACGAGCCGACCCCTCTAGCGGCCATGGTGGAAGAGGGCGTGGCGGC
CCGCCTCGCCCGCCTTGCCGCCGCGGGGCTGCCCGCGATCGCCGCGCTGC
TGCTGCTCGGCAGGACGAGCAGCAGCGCTGACGATGACGGCGGCGAGCTG
CCGACTTCGCCGCCGGAGCAAGTATCGGAGGCGGTGCGGTCGCCGCTCGT
GAGCGCGTGCGGGCTGCTGACGAACATCCTTACCTCCGCAGGCCACCTGG
CGTGGCCAGAGGATCGGCCGGCGGCTGCCGGCGGCAGCGGCGCGGCGCGG
AGACGAGGCGCCGGGCGCCAGCAGCCGCGGGGGGCGCCGAGACACCCCGT
CCTCGGGCACCCGGGCATGGGGCAGTGCCTGGCGTCGCTCGCCGAGGTGG
CGGGCGCCGCCGGCGCTGCCCGGCGCGCCGGGGGCGGGGCTCGCTGGCGG
CTGCTCGCCGCGCACGCCACCCTCGTCGTGATGACCGTGGCCCGCGCGGC
CACGCCGGGGAACGGCCTGGCGCCGGCGGCCGGCCTGGCCGGCCGGAGGC
CACGGCGGTGGTCGGGAGAGGAGGGCGACCCGCCAGGCGACGGTGCGTCG
CCGTCCGTCTGGGAAGGGATGGCACGGGCGGTGGACGAGGCCCTGGGGTC
GTTGAGCGCGACCCCCGGTAGGGGATTGATCGGTGGCGGGAGGGGGGGAA
CGGGGGAAGAGGAGGAGGAGGAGGCGAGCTACGAGGAAGGTGCGATCTGG
CAGTGGTGCCTCGAGTGCGCGAGGGAGATCGAGGTCGCTCCGGGCGGGGT
GACGGGGAACGCGTACGTGTCGTGCGGGGTCGTGCCGCGGAGGTTGCTCA
GTAGCCTGAAGGAGGCCTCTGCTGATGGCAGGATCTAGCGACCTTTGTGT
GGTGGTGATCCGTGGGCAAGCGGGTTCTCGGTCATCAGGATTCATTGGAA
TACACCGGGCATGGTTTTATAGAGATTTGTTTTGTTTCGGCGTCGAAGGG
ACTGCACCATTGTCTACCATGTTTTGAACGGGGTGTGTGTGTCGTCCTTT
TGTGAAGGGGGAGGAGAGCAGGATTTGGCGCTGTATCCTGGTTCAGCGGG
TGTCGAGCGTGCTACACCCAGCTGAACCTAACAAAATGTTAACGTATGTG
CTCTGCGCGTGTAGCTAGAATACGAGCGGAGGTCAAGTTTCGGGGCTACC
CGGTTTTGTTCGGAATGGCATCGATGCTCTTTGTGGTTTGGCGTGGCTGG
ACTGCTTGGGCTGAGTGTTGTTCTAGACGTGTTTGTTGGGGTATCGCATG
TTGTTGCTATCGTCATATAAGTAATCATGGCCGATACCCTGCACGTCCTC
GTTCCTACGGCGCTCTTCGAGGCAAAGAACGAAATTGCCTTGGGCGTATT
CTCCACGCTCCCACGCCACAAGT back to topprotein sequence of EsuBft663_10a-0001 >EsuBft663_10 ID=EsuBft663_10|Name=EsuBft663_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=367bp
MFWKPPDSDDEESYDDDDDDDTSATVTPTLAAFPGAARYLAGGARAGHAA
SASSVTRPDEALHNILRAMLALSYEPTPLAAMVEEGVAARLARLAAAGLP
AIAALLLLGRTSSSADDDGGELPTSPPEQVSEAVRSPLVSACGLLTNILT
SAGHLAWPEDRPAAAGGSGAARRRGAGRQQPRGAPRHPVLGHPGMGQCLA
SLAEVAGAAGAARRAGGGARWRLLAAHATLVVMTVARAATPGNGLAPAAG
LAGRRPRRWSGEEGDPPGDGASPSVWEGMARAVDEALGSLSATPGRGLIG
GGRGGTGEEEEEEASYEEGAIWQWCLECAREIEVAPGGVTGNAYVSCGVV
PRRLLSSLKEASADGRI back to topmRNA from alignment at Scaffold_189:174683..176355- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft663_10a-0001 ID=EsuBft663_10a-0001|Name=EsuBft663_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1673bp|location=Sequence derived from alignment at Scaffold_189:174683..176355- (Ectocarpus subulatus male Bft15b)
ACGCCTTCGACCCACCTTTTGAAAATATTGCCCGATGTTCTGGAAGCCCC
CTGACTCGGACGATGAGGAGAGCTACGACGACGACGACGACGACGACACG
TCGGCGACCGTGACGCCAACGCTGGCGGCCTTCCCGGGAGCCGCCCGATA
CCTGGCCGGCGGCGCTCGGGCGGGCCACGCCGCGTCGGCGTCGTCCGTTA
CGCGGCCGGACGAGGCCCTCCACAACATCTTGCGTGCGATGCTGGCGCTC
TCGTACGAGCCGACCCCTCTAGCGGCCATGGTGGAAGAGGGCGTGGCGGC
CCGCCTCGCCCGCCTTGCCGCCGCGGGGCTGCCCGCGATCGCCGCGCTGC
TGCTGCTCGGCAGGACGAGCAGCAGCGCTGACGATGACGGCGGCGAGCTG
CCGACTTCGCCGCCGGAGCAAGTATCGGAGGCGGTGCGGTCGCCGCTCGT
GAGCGCGTGCGGGCTGCTGACGAACATCCTTACCTCCGCAGGCCACCTGG
CGTGGCCAGAGGATCGGCCGGCGGCTGCCGGCGGCAGCGGCGCGGCGCGG
AGACGAGGCGCCGGGCGCCAGCAGCCGCGGGGGGCGCCGAGACACCCCGT
CCTCGGGCACCCGGGCATGGGGCAGTGCCTGGCGTCGCTCGCCGAGGTGG
CGGGCGCCGCCGGCGCTGCCCGGCGCGCCGGGGGCGGGGCTCGCTGGCGG
CTGCTCGCCGCGCACGCCACCCTCGTCGTGATGACCGTGGCCCGCGCGGC
CACGCCGGGGAACGGCCTGGCGCCGGCGGCCGGCCTGGCCGGCCGGAGGC
CACGGCGGTGGTCGGGAGAGGAGGGCGACCCGCCAGGCGACGGTGCGTCG
CCGTCCGTCTGGGAAGGGATGGCACGGGCGGTGGACGAGGCCCTGGGGTC
GTTGAGCGCGACCCCCGGTAGGGGATTGATCGGTGGCGGGAGGGGGGGAA
CGGGGGAAGAGGAGGAGGAGGAGGCGAGCTACGAGGAAGGTGCGATCTGG
CAGTGGTGCCTCGAGTGCGCGAGGGAGATCGAGGTCGCTCCGGGCGGGGT
GACGGGGAACGCGTACGTGTCGTGCGGGGTCGTGCCGCGGAGGTTGCTCA
GTAGCCTGAAGGAGGCCTCTGCTGATGGCAGGATCTAGCGACCTTTGTGT
GGTGGTGATCCGTGGGCAAGCGGGTTCTCGGTCATCAGGATTCATTGGAA
TACACCGGGCATGGTTTTATAGAGATTTGTTTTGTTTCGGCGTCGAAGGG
ACTGCACCATTGTCTACCATGTTTTGAACGGGGTGTGTGTGTCGTCCTTT
TGTGAAGGGGGAGGAGAGCAGGATTTGGCGCTGTATCCTGGTTCAGCGGG
TGTCGAGCGTGCTACACCCAGCTGAACCTAACAAAATGTTAACGTATGTG
CTCTGCGCGTGTAGCTAGAATACGAGCGGAGGTCAAGTTTCGGGGCTACC
CGGTTTTGTTCGGAATGGCATCGATGCTCTTTGTGGTTTGGCGTGGCTGG
ACTGCTTGGGCTGAGTGTTGTTCTAGACGTGTTTGTTGGGGTATCGCATG
TTGTTGCTATCGTCATATAAGTAATCATGGCCGATACCCTGCACGTCCTC
GTTCCTACGGCGCTCTTCGAGGCAAAGAACGAAATTGCCTTGGGCGTATT
CTCCACGCTCCCACGCCACAAGT back to topCoding sequence (CDS) from alignment at Scaffold_189:174683..176355- >EsuBft663_10a-0001 ID=EsuBft663_10a-0001|Name=EsuBft663_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1104bp|location=Sequence derived from alignment at Scaffold_189:174683..176355- (Ectocarpus subulatus male Bft15b)
ATGTTCTGGAAGCCCCCTGACTCGGACGATGAGGAGAGCTACGACGACGA
CGACGACGACGACACGTCGGCGACCGTGACGCCAACGCTGGCGGCCTTCC
CGGGAGCCGCCCGATACCTGGCCGGCGGCGCTCGGGCGGGCCACGCCGCG
TCGGCGTCGTCCGTTACGCGGCCGGACGAGGCCCTCCACAACATCTTGCG
TGCGATGCTGGCGCTCTCGTACGAGCCGACCCCTCTAGCGGCCATGGTGG
AAGAGGGCGTGGCGGCCCGCCTCGCCCGCCTTGCCGCCGCGGGGCTGCCC
GCGATCGCCGCGCTGCTGCTGCTCGGCAGGACGAGCAGCAGCGCTGACGA
TGACGGCGGCGAGCTGCCGACTTCGCCGCCGGAGCAAGTATCGGAGGCGG
TGCGGTCGCCGCTCGTGAGCGCGTGCGGGCTGCTGACGAACATCCTTACC
TCCGCAGGCCACCTGGCGTGGCCAGAGGATCGGCCGGCGGCTGCCGGCGG
CAGCGGCGCGGCGCGGAGACGAGGCGCCGGGCGCCAGCAGCCGCGGGGGG
CGCCGAGACACCCCGTCCTCGGGCACCCGGGCATGGGGCAGTGCCTGGCG
TCGCTCGCCGAGGTGGCGGGCGCCGCCGGCGCTGCCCGGCGCGCCGGGGG
CGGGGCTCGCTGGCGGCTGCTCGCCGCGCACGCCACCCTCGTCGTGATGA
CCGTGGCCCGCGCGGCCACGCCGGGGAACGGCCTGGCGCCGGCGGCCGGC
CTGGCCGGCCGGAGGCCACGGCGGTGGTCGGGAGAGGAGGGCGACCCGCC
AGGCGACGGTGCGTCGCCGTCCGTCTGGGAAGGGATGGCACGGGCGGTGG
ACGAGGCCCTGGGGTCGTTGAGCGCGACCCCCGGTAGGGGATTGATCGGT
GGCGGGAGGGGGGGAACGGGGGAAGAGGAGGAGGAGGAGGCGAGCTACGA
GGAAGGTGCGATCTGGCAGTGGTGCCTCGAGTGCGCGAGGGAGATCGAGG
TCGCTCCGGGCGGGGTGACGGGGAACGCGTACGTGTCGTGCGGGGTCGTG
CCGCGGAGGTTGCTCAGTAGCCTGAAGGAGGCCTCTGCTGATGGCAGGAT
CTAG back to top
|