EsuBft663_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft663_10a-0001
Unique NameEsuBft663_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_189contigScaffold_189:174683..176355 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LCF7
ProteomeIdEsuBft663_10
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length167
Hectar predicted targeting categoryother localisation
Evalue3.02e-179
EggNOG OGs2EY0B@1|root,2SZK0@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-26_004840.1
Date last modified2016-06-14
Date creation2016-06-14
DescriptionNeurochondrin
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft663_10aEsuBft663_10aEctocarpus subulatus male Bft15bgeneScaffold_189 174683..176355 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft663_10a-0001-exonEsuBft663_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_189 174683..176355 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft663_10a-0001-exonagat-three_prime_utr-19910Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_189 174683..175217 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft663_10a-0001-cdsEsuBft663_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_189 175218..176321 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft663_10a-0001-exonagat-five_prime_utr-12721Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_189 176322..176355 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft663_10a-0001EsuBft663_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_189 175218..176321 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft663_10a-0001 ID=EsuBft663_10a-0001|Name=EsuBft663_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1673bp|location=Sequence derived from alignment at Scaffold_189:174683..176355- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ACGCCTTCGACCCACCTTTTGAAAATATTGCCCGATGTTCTGGAAGCCCC
CTGACTCGGACGATGAGGAGAGCTACGACGACGACGACGACGACGACACG
TCGGCGACCGTGACGCCAACGCTGGCGGCCTTCCCGGGAGCCGCCCGATA
CCTGGCCGGCGGCGCTCGGGCGGGCCACGCCGCGTCGGCGTCGTCCGTTA
CGCGGCCGGACGAGGCCCTCCACAACATCTTGCGTGCGATGCTGGCGCTC
TCGTACGAGCCGACCCCTCTAGCGGCCATGGTGGAAGAGGGCGTGGCGGC
CCGCCTCGCCCGCCTTGCCGCCGCGGGGCTGCCCGCGATCGCCGCGCTGC
TGCTGCTCGGCAGGACGAGCAGCAGCGCTGACGATGACGGCGGCGAGCTG
CCGACTTCGCCGCCGGAGCAAGTATCGGAGGCGGTGCGGTCGCCGCTCGT
GAGCGCGTGCGGGCTGCTGACGAACATCCTTACCTCCGCAGGCCACCTGG
CGTGGCCAGAGGATCGGCCGGCGGCTGCCGGCGGCAGCGGCGCGGCGCGG
AGACGAGGCGCCGGGCGCCAGCAGCCGCGGGGGGCGCCGAGACACCCCGT
CCTCGGGCACCCGGGCATGGGGCAGTGCCTGGCGTCGCTCGCCGAGGTGG
CGGGCGCCGCCGGCGCTGCCCGGCGCGCCGGGGGCGGGGCTCGCTGGCGG
CTGCTCGCCGCGCACGCCACCCTCGTCGTGATGACCGTGGCCCGCGCGGC
CACGCCGGGGAACGGCCTGGCGCCGGCGGCCGGCCTGGCCGGCCGGAGGC
CACGGCGGTGGTCGGGAGAGGAGGGCGACCCGCCAGGCGACGGTGCGTCG
CCGTCCGTCTGGGAAGGGATGGCACGGGCGGTGGACGAGGCCCTGGGGTC
GTTGAGCGCGACCCCCGGTAGGGGATTGATCGGTGGCGGGAGGGGGGGAA
CGGGGGAAGAGGAGGAGGAGGAGGCGAGCTACGAGGAAGGTGCGATCTGG
CAGTGGTGCCTCGAGTGCGCGAGGGAGATCGAGGTCGCTCCGGGCGGGGT
GACGGGGAACGCGTACGTGTCGTGCGGGGTCGTGCCGCGGAGGTTGCTCA
GTAGCCTGAAGGAGGCCTCTGCTGATGGCAGGATCTAGCGACCTTTGTGT
GGTGGTGATCCGTGGGCAAGCGGGTTCTCGGTCATCAGGATTCATTGGAA
TACACCGGGCATGGTTTTATAGAGATTTGTTTTGTTTCGGCGTCGAAGGG
ACTGCACCATTGTCTACCATGTTTTGAACGGGGTGTGTGTGTCGTCCTTT
TGTGAAGGGGGAGGAGAGCAGGATTTGGCGCTGTATCCTGGTTCAGCGGG
TGTCGAGCGTGCTACACCCAGCTGAACCTAACAAAATGTTAACGTATGTG
CTCTGCGCGTGTAGCTAGAATACGAGCGGAGGTCAAGTTTCGGGGCTACC
CGGTTTTGTTCGGAATGGCATCGATGCTCTTTGTGGTTTGGCGTGGCTGG
ACTGCTTGGGCTGAGTGTTGTTCTAGACGTGTTTGTTGGGGTATCGCATG
TTGTTGCTATCGTCATATAAGTAATCATGGCCGATACCCTGCACGTCCTC
GTTCCTACGGCGCTCTTCGAGGCAAAGAACGAAATTGCCTTGGGCGTATT
CTCCACGCTCCCACGCCACAAGT
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protein sequence of EsuBft663_10a-0001

>EsuBft663_10 ID=EsuBft663_10|Name=EsuBft663_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=367bp
MFWKPPDSDDEESYDDDDDDDTSATVTPTLAAFPGAARYLAGGARAGHAA
SASSVTRPDEALHNILRAMLALSYEPTPLAAMVEEGVAARLARLAAAGLP
AIAALLLLGRTSSSADDDGGELPTSPPEQVSEAVRSPLVSACGLLTNILT
SAGHLAWPEDRPAAAGGSGAARRRGAGRQQPRGAPRHPVLGHPGMGQCLA
SLAEVAGAAGAARRAGGGARWRLLAAHATLVVMTVARAATPGNGLAPAAG
LAGRRPRRWSGEEGDPPGDGASPSVWEGMARAVDEALGSLSATPGRGLIG
GGRGGTGEEEEEEASYEEGAIWQWCLECAREIEVAPGGVTGNAYVSCGVV
PRRLLSSLKEASADGRI
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mRNA from alignment at Scaffold_189:174683..176355-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft663_10a-0001 ID=EsuBft663_10a-0001|Name=EsuBft663_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1673bp|location=Sequence derived from alignment at Scaffold_189:174683..176355- (Ectocarpus subulatus male Bft15b)
ACGCCTTCGACCCACCTTTTGAAAATATTGCCCGATGTTCTGGAAGCCCC
CTGACTCGGACGATGAGGAGAGCTACGACGACGACGACGACGACGACACG
TCGGCGACCGTGACGCCAACGCTGGCGGCCTTCCCGGGAGCCGCCCGATA
CCTGGCCGGCGGCGCTCGGGCGGGCCACGCCGCGTCGGCGTCGTCCGTTA
CGCGGCCGGACGAGGCCCTCCACAACATCTTGCGTGCGATGCTGGCGCTC
TCGTACGAGCCGACCCCTCTAGCGGCCATGGTGGAAGAGGGCGTGGCGGC
CCGCCTCGCCCGCCTTGCCGCCGCGGGGCTGCCCGCGATCGCCGCGCTGC
TGCTGCTCGGCAGGACGAGCAGCAGCGCTGACGATGACGGCGGCGAGCTG
CCGACTTCGCCGCCGGAGCAAGTATCGGAGGCGGTGCGGTCGCCGCTCGT
GAGCGCGTGCGGGCTGCTGACGAACATCCTTACCTCCGCAGGCCACCTGG
CGTGGCCAGAGGATCGGCCGGCGGCTGCCGGCGGCAGCGGCGCGGCGCGG
AGACGAGGCGCCGGGCGCCAGCAGCCGCGGGGGGCGCCGAGACACCCCGT
CCTCGGGCACCCGGGCATGGGGCAGTGCCTGGCGTCGCTCGCCGAGGTGG
CGGGCGCCGCCGGCGCTGCCCGGCGCGCCGGGGGCGGGGCTCGCTGGCGG
CTGCTCGCCGCGCACGCCACCCTCGTCGTGATGACCGTGGCCCGCGCGGC
CACGCCGGGGAACGGCCTGGCGCCGGCGGCCGGCCTGGCCGGCCGGAGGC
CACGGCGGTGGTCGGGAGAGGAGGGCGACCCGCCAGGCGACGGTGCGTCG
CCGTCCGTCTGGGAAGGGATGGCACGGGCGGTGGACGAGGCCCTGGGGTC
GTTGAGCGCGACCCCCGGTAGGGGATTGATCGGTGGCGGGAGGGGGGGAA
CGGGGGAAGAGGAGGAGGAGGAGGCGAGCTACGAGGAAGGTGCGATCTGG
CAGTGGTGCCTCGAGTGCGCGAGGGAGATCGAGGTCGCTCCGGGCGGGGT
GACGGGGAACGCGTACGTGTCGTGCGGGGTCGTGCCGCGGAGGTTGCTCA
GTAGCCTGAAGGAGGCCTCTGCTGATGGCAGGATCTAGCGACCTTTGTGT
GGTGGTGATCCGTGGGCAAGCGGGTTCTCGGTCATCAGGATTCATTGGAA
TACACCGGGCATGGTTTTATAGAGATTTGTTTTGTTTCGGCGTCGAAGGG
ACTGCACCATTGTCTACCATGTTTTGAACGGGGTGTGTGTGTCGTCCTTT
TGTGAAGGGGGAGGAGAGCAGGATTTGGCGCTGTATCCTGGTTCAGCGGG
TGTCGAGCGTGCTACACCCAGCTGAACCTAACAAAATGTTAACGTATGTG
CTCTGCGCGTGTAGCTAGAATACGAGCGGAGGTCAAGTTTCGGGGCTACC
CGGTTTTGTTCGGAATGGCATCGATGCTCTTTGTGGTTTGGCGTGGCTGG
ACTGCTTGGGCTGAGTGTTGTTCTAGACGTGTTTGTTGGGGTATCGCATG
TTGTTGCTATCGTCATATAAGTAATCATGGCCGATACCCTGCACGTCCTC
GTTCCTACGGCGCTCTTCGAGGCAAAGAACGAAATTGCCTTGGGCGTATT
CTCCACGCTCCCACGCCACAAGT
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Coding sequence (CDS) from alignment at Scaffold_189:174683..176355-

>EsuBft663_10a-0001 ID=EsuBft663_10a-0001|Name=EsuBft663_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1104bp|location=Sequence derived from alignment at Scaffold_189:174683..176355- (Ectocarpus subulatus male Bft15b)
ATGTTCTGGAAGCCCCCTGACTCGGACGATGAGGAGAGCTACGACGACGA
CGACGACGACGACACGTCGGCGACCGTGACGCCAACGCTGGCGGCCTTCC
CGGGAGCCGCCCGATACCTGGCCGGCGGCGCTCGGGCGGGCCACGCCGCG
TCGGCGTCGTCCGTTACGCGGCCGGACGAGGCCCTCCACAACATCTTGCG
TGCGATGCTGGCGCTCTCGTACGAGCCGACCCCTCTAGCGGCCATGGTGG
AAGAGGGCGTGGCGGCCCGCCTCGCCCGCCTTGCCGCCGCGGGGCTGCCC
GCGATCGCCGCGCTGCTGCTGCTCGGCAGGACGAGCAGCAGCGCTGACGA
TGACGGCGGCGAGCTGCCGACTTCGCCGCCGGAGCAAGTATCGGAGGCGG
TGCGGTCGCCGCTCGTGAGCGCGTGCGGGCTGCTGACGAACATCCTTACC
TCCGCAGGCCACCTGGCGTGGCCAGAGGATCGGCCGGCGGCTGCCGGCGG
CAGCGGCGCGGCGCGGAGACGAGGCGCCGGGCGCCAGCAGCCGCGGGGGG
CGCCGAGACACCCCGTCCTCGGGCACCCGGGCATGGGGCAGTGCCTGGCG
TCGCTCGCCGAGGTGGCGGGCGCCGCCGGCGCTGCCCGGCGCGCCGGGGG
CGGGGCTCGCTGGCGGCTGCTCGCCGCGCACGCCACCCTCGTCGTGATGA
CCGTGGCCCGCGCGGCCACGCCGGGGAACGGCCTGGCGCCGGCGGCCGGC
CTGGCCGGCCGGAGGCCACGGCGGTGGTCGGGAGAGGAGGGCGACCCGCC
AGGCGACGGTGCGTCGCCGTCCGTCTGGGAAGGGATGGCACGGGCGGTGG
ACGAGGCCCTGGGGTCGTTGAGCGCGACCCCCGGTAGGGGATTGATCGGT
GGCGGGAGGGGGGGAACGGGGGAAGAGGAGGAGGAGGAGGCGAGCTACGA
GGAAGGTGCGATCTGGCAGTGGTGCCTCGAGTGCGCGAGGGAGATCGAGG
TCGCTCCGGGCGGGGTGACGGGGAACGCGTACGTGTCGTGCGGGGTCGTG
CCGCGGAGGTTGCTCAGTAGCCTGAAGGAGGCCTCTGCTGATGGCAGGAT
CTAG
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