EsuBft652_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft652_3a-0001
Unique NameEsuBft652_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_614contigScaffold_614:79128..84782 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft652_3
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length227
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft652_3aEsuBft652_3aEctocarpus subulatus male Bft15bgeneScaffold_614 79128..84782 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft652_3a-0001EsuBft652_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_614 80451..81047 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft652_3a-0001-exonagat-exon-57686Ectocarpus subulatus male Bft15bexonScaffold_614 79128..81129 -
EsuBft652_3a-0001-exonEsuBft652_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_614 81839..81919 -
EsuBft652_3a-0001-exonagat-exon-57684Ectocarpus subulatus male Bft15bexonScaffold_614 82169..82267 -
EsuBft652_3a-0001-exonagat-exon-57687Ectocarpus subulatus male Bft15bexonScaffold_614 82629..82706 -
EsuBft652_3a-0001-exonagat-exon-57685Ectocarpus subulatus male Bft15bexonScaffold_614 84765..84782 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft652_3a-0001-exonagat-three_prime_utr-19744Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_614 79128..80450 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft652_3a-0001-cdsEsuBft652_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_614 80451..81047 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft652_3a-0001-exonagat-five_prime_utr-12618Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_614 81048..81129 -
EsuBft652_3a-0001-exonagat-five_prime_utr-12619Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_614 81839..81919 -
EsuBft652_3a-0001-exonagat-five_prime_utr-12620Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_614 82169..82267 -
EsuBft652_3a-0001-exonagat-five_prime_utr-12621Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_614 82629..82706 -
EsuBft652_3a-0001-exonagat-five_prime_utr-12622Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_614 84765..84782 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft652_3a-0001 ID=EsuBft652_3a-0001|Name=EsuBft652_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2278bp|location=Sequence derived from alignment at Scaffold_614:79128..84782- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTTGTACGCTCACAGCAGTTTCGCGGGCGCAAGTGCCACCGTCATCGTCA
CCGGGGCAATTGTGCTCGAGGGAGCATGGGCATTGGCAAAGAAAAGATGG
AGACTCTCAAGCAGCACCGACAATGATCGTGCCGCCAGGCACGTGTACAA
GGACTGGGCAAAGGCCAGGGCCCCGTTCAGCGCCAGCAACAGCGGGTTAT
CTTCCGTCCGGTACGGGTGAGGCGAGCACGGGGCGGGTTCGACTCTAGCC
CTTTCGATCTTTCGGCCGTCCGCAAGGTACGGGCGAGCCACGACCGACGC
CACTTCGCCCGGTGCCAGGCGGGCCGCCGTACACTGCCTGTGCCAGTTGC
TAGCGGAGATGTCGGCAAGGCAGCCGTTTAGCTCGCCGGCACCCATGATC
GTCGTCTCCCTGACGGCCGAGAACTTTCGAGTCCCCCCCTCGCCGTACCT
GCGTCCATGCCATTCCTCGCAGTTCCCGCCGTCTACTCCCCTCCCTGACT
CGATCCTCCTCAACAAGGGTATCGACGGCTCGATGATGAGGCCGGGCCGT
GCCACCGCCGCCCCCCTCAGCGTCCGGTGGCTTGATATTGAATTGGAGGA
GGAGGAGGAGGCCCGAAGGCGCGAGCGGGGCGCTAGGCTGGCGGAGGAGG
AGGAGGAGGAGGTCCGCAGACGCGAGCTGGACGCCATGTTGAGCGCTGGT
GGCGGCGACGGCGGTACAGAGGGGGGCTCTTCGTGGGCGGTCCACCCAGA
GGCTGCGGCGGTTGAGGGGGCCCCCCGCCGCTGGGAGAGCACCAGGGCGA
GGCTGGCCCGGAAGGCCCGCGAAGCGGCTGCGGCGGCTGAAGCGGCTGCC
GCCGCCACCACCGTCGACGAGGAGGAGGGTGCCACCGGCGGTGAGGAAGA
GGAAGAGCAGGAGAGTGCCTCGTCGACGATCCAGCCGGAGGCTACGGCGG
ATTAGGGGGGCCAGAAAGCCCCCCGCCAGAAGAGCAAAGGGGCGAGGCTG
GCCCGGGAGGCGAGAGAAGCGGCGGCCGCCTCGTCGTCCTCACAGTAGTG
GGGCCGATACGCGTTGTTACATGAACGGACCCCGTTTGATGGTAGACGTG
TACAACTGTTTGAAAGCACGTGAGTGTCCTTTATTGGGTGATTTACCGCA
ACATTTCGGGTTCACGGCGGAAGGGAGGTAGATAGGGGGTAAGTAGTACT
CAGGCGTGGGCGCGAGTGGTTTGCGTGGTCCTGATGAATTGCAGAATACT
TCTGCAGTATGCATCCGCTTGTTCAGAATTTACAAGGAAGGGCCCTCTCG
CTGGTATCGCCGGCGGCAGAGGGAAGGGCCAACCAATATGCATGTGTGAT
TTATCTACCTTTAAGAGTTGTAGCAAGCGTGTTTTTCTTGTGCCTCGTAT
CTGGGTTCGACAGATTGATGCAAACGCGGTGTAAAAATGGACAATGACAC
AGGTTGTCGAATACTGAGTGATGATGGAGTGTGGAAAGGTGCTTTCAATG
GGATGAAGGCAAAGGTCGAGAAAACGTCCCCTGTGGTTCCACGAGGGCGT
GTACTGCATGGCGTGAGGGTGTATGTATGTATGTTGACAGCATTACATCC
ACAGGTGTTGGTGTTGCTGTCGTCGGTGTAGGAGGCATGTCAGCGGTTGG
TGCTGGCCAAGGTGTGCGTTGGGTGCCGAGGTGAACAACAATATTTACAC
GGGTCTGATAGAAAACGTCAAATATCTAATGTGTTGATGTTTCCCGGATT
TAAACAACCTGTGGCAGGTGTGTTTACACTTGTGTGCTCTTCTTGTTTTA
TCGCATGTCCGTCGTAGTGTACCCTTGGGCACGCTATACGGTAGCAATGT
TGATTTGTGTTTTCGACTGGCTTGGATGTATTTTACTTCATGAAGCTTTG
TTGTTGCGGACCAATACCCGAGTCCGTTGTGAGTGTGCCCAAGAAGCGAA
CGTTGGACTATTGGTCGTTTCTTGCACAGGTGAGAATTTAGCCGGGGAAC
CACACCCTTGGGAGCGTGGAACGAACGGTGAACGTATGCAAGGTAGATAA
GAGGTAGGTGCGTTTGTGTGTTGAGAGCGCCGTCCACTTTGTCGATGTGA
GTACTATCGTGGGCACCCCTCGGGGAGAATCGATACCTGACATACTTTCC
GTTGTCGTTAAGGGTGGTTCTCAACGCTTCGGAAAAGTAGCGAAATTTTC
CACGCGACGGTGACAAGAAAACCCGGCGTTTTTTTACTTGTTCTATTCGT
AATGTCATGGCAAGAAGTACGTTTCCTT
back to top

protein sequence of EsuBft652_3a-0001

>EsuBft652_3 ID=EsuBft652_3|Name=EsuBft652_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=198bp
MSARQPFSSPAPMIVVSLTAENFRVPPSPYLRPCHSSQFPPSTPLPDSIL
LNKGIDGSMMRPGRATAAPLSVRWLDIELEEEEEARRRERGARLAEEEEE
EVRRRELDAMLSAGGGDGGTEGGSSWAVHPEAAAVEGAPRRWESTRARLA
RKAREAAAAAEAAAAATTVDEEEGATGGEEEEEQESASSTIQPEATAD
back to top

mRNA from alignment at Scaffold_614:79128..84782-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft652_3a-0001 ID=EsuBft652_3a-0001|Name=EsuBft652_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5655bp|location=Sequence derived from alignment at Scaffold_614:79128..84782- (Ectocarpus subulatus male Bft15b)
GTTGTACGCTCACAGCAGGTTATACACCACAACAACCCGATACCATGAGT
GACGCCACGATAACAAGCACGCCTTGCACGTTACTACGTTGTCATCTACG
AAAGTTCTTACTTTTACTTCAGAAATTTCGCTAAATAGACTAGACTAGAC
TAGATAGACAAGTCTAGACTGTTCGAGGGAAAAATATGCCAGCTGCTGTG
TTTTGTGGACCAAAGAGTCTAATCCACGTGCAAATCAATCAATCAATCAA
TCAATCAATCAATCTAAAATAGCAGGAGTGATGCATCAAAGATGTGTGAA
AGCGACCCCGAGGGGCGGGGCTCGAAATTACAATCAAGAAAACAATTAGA
CCTAGGTTAAATTGTGGTTTTCGTTGACGTTCGCTGGTGGACTGTTCGAA
TACCACAGCTGCTGCCACTTTTCCGACACAGACCCTCAACGACCACATAC
GTACATACACCAGAGAGAAATGGATTGTTTGGAACGAGAGTACAGGAACT
GGTCCAAAACCATGCAAGAGCACAACAACACGACCGTTTACAACAGGTAT
GTGGGCACGGGAGCCACGTATGTAGTACATGCATAGTCTAGTCTGGTCTA
ACCAGCTTGCTTGGATTCTGTGACGACAGAAGTAATTATTCAGTACGTGT
GCCAGCTATAGTCCTCAGTAGTCGACCCTGTCTGGATTCTCACGTTATCC
TGTTGTCCTGCTTGGCGCCGAACGATAAGTTTGTTAGAGGTGGTCGCAGC
ATCGTTCGGCGCCAAGCAGCACAACAGGATAACGTGAGAATCCAGACAGG
GTCGACTACTGAGGACTATAGCTGGCACTTCCACTGAATAATTACTTCTG
TCGTCACAGAATACAAGCTGTGAGGGTCAGAGCGCGAGATGTACGAAGTG
AAAACATGGCCACCGCGCCCTCAAGTGATGCAAAAATGCTGTCGGTAGTG
GCATCAGTAGCTGTAGCCTAGGCAAGAATCTACGTAATCGGCGTGCTCCA
AGGGTGACAATCCTTCCGCAATATAATCTCATTTCGACTTGAATATTGGT
CAGCATCTGGGACACCCGTTTGAGTGCACCGACATGTGTGTCGAATAAGA
TAAACCCATGTCCTGCTATAGCTCTCCACCATTAGAACCAGCATGATGGG
TCTCCGCATAGATCACGTGCAAGTTTGTTTCGTGGTTAGACAAGAGAGTG
GATACATACTACGACACACAGCGCTCGCAATCCATACAATACATAAAGTC
TAGAATAGTCTACTCTATGTTCGATTCTTGTATTTCTTGCACAACGTCTT
CGTGCCTTCCGTAGGTGTCTCTCTCTCTGTCCGTCTGTCTCTCTCTGTCT
CTCTGGGGTCTCGACTCCCCCTTCCAGTGTTTGCTTTCCTTGTATATTTC
TGGTTGTGTGTCTCTCTCATCGTAGCTTCCTTTTGTCCTGATCCTGCTAT
GCGCTCGCCTTAAATTGATGTGGGCTTGAGATTTCCCACCTTCGTTTCTG
TTGTCTCCTTCCCATCTCATATCTCGTACGTATGCATGTGTACTTACGTG
TCGCATGTTTACTGACACAACTGCATCTGCGCCCAACCAGCTCTCTCTGC
CTTTTTTGGTCCTCTAAGTTTGAAAACGTATAGTCTACATATCATACTCC
TTGATCGTTCTCCCGCTCGGTCAACTCGCCACGAGTTGTCACTGCATGAT
CTAGTCACGACAAGAGTACTTCAGCAATCCGAATACCCTGGCCAATGATT
ATGTCGAGGCCAACAAGATGATGTCCGTCTCAAATTACCACCGCCTGGAA
AATTTTGACTACCATACCCAATGCTAACTCAAGTTATTGATGTGCTGTTG
CAATGTGTGGGAAACACTTCGTTCGGGCCAACAGCTGACGGTATTCCAAA
ATAAAACCGACCCGACAGCGGAGATGGAGGTGGAGTATGTATTCGCTCTT
TCACTTTGCGCACCGTCAACATTTATGCACATTCCTGTCCAATCCTGATT
GTCGTAAACAACGCTTTCCTCGTCCGGTGCAACTGCTGCATTCATTCTTG
GCCCGTCATTCCTCCGTCCCCGACAGTTTCGCGGGCGCAAGTGCCACCGT
CATCGTCACCGGGGCAATTGTGCTCGAGGGAGCATGGGCATTGGCAAAGA
AAAGGTGAGTGTATACGTTTGCTCCATCAAACTTGAGTAGGTGGGGGAGT
AGGGTACACTAGCGGGTGCGTGAGTGCTCCGAGGGTTGGCGTTTCACGTT
GATCTGGCTAGACGACGTACTCATCGCTGAGGCATATTTGGAAAACAGTA
ACAAGACCCTCGCACCCAGAGGATCAAACGACGGCAAGGGTTTCGATTTA
AACTTTGGAAGAAGCCGAATGCGCTATGCTTGCGGTGTTTGATAGCCCTC
TGCTGCAGAGTGTAAACCAGTCCCGTTTCCTGCAGGACCCACGAAATCGA
CTTCCACAAGCACGAGCCCACACGGCACTTTCCATGGCGCACCACGTTTT
GACATTGGCCCCCAGATGGAGACTCTCAAGCAGCACCGACAATGATCGTG
CCGCCAGGCACGTGTACAAGGACTGGGCAAAGGCCAGGGCCCCGTTCAGC
GCCAGCAACAGCGGGTGAGTTTGATAGTACAGAATTTTCCTCGACAAGTT
CGGTTATTTTTCGCGACGACGTTTGCTCCGTGCCGAACATTTGCTCTGCA
GCAGATACAGCGAGGCATCTAGTGGGTACTGCTGTAGGTTGTATTCGCCA
AAGCATTAAAATATTTATCCACGAACTCCCCATTTCATCTCGCACGACAC
TCACCACCACCGACATTCTACTTCCTCCCTCCCTTGCGTGTGGCGGACCA
AACCCAGAACCAGGTTATCTTCCGTCCGGTACGGGTGAGGCGAGCACGGG
GCGGGTTCGACTCTAGCCCTTTCGATCTTTCGGCCGTCCGCAAGGTATGT
GTACGAGGGTTGGTCAAAGGCCGGTGCCCCCTTCGGCGCTAGCAACTGCG
GATGAGTTTGATAGTACAGCATTTTCGTCAACAACTTCCAGTATTTGTAA
CCACGTGTACGCCGCCGTCCCAAACTGTTGCTCCGCTGCGCACGACCCAA
CAACAAAAGACAACAATCACCAACCCCTAGTCCATGTCTTGTTCGGATGT
ATTCTCCACGTATGATTTCATCTACTTCCTCTGTCCCATATGTCTGTAGC
GTTATGGGCGAGACGTTCTTGAGGTGTAACGTTAGTGCCGATTGCGAACT
GAGGTTCGTTGCAAAGACAAAGCGGACAGGATGCTGATACAAAACACAGA
AACGGTTATCAACACACAAATCTAGCCGAAACATCACCGGTCTGTAGGTG
TCTCTCGAGAGATTGTGTGTGAGTGTGATTTTGGTCCCTGCACCCTCGCC
GAAATGAGGCAAAACATGGCTATTTTTAAACCGACTGATACTTTTGCGGC
CCTTGGCCCATGCAGGGTAACCAATGTCCACTAAATCATCGCCGAAGGCA
TCGGACACGGCTAAAGCACTCGTACGAGCACAACGCTACAGACTTAGGTA
CAGAAGAAGTGTTTCTCCGAGAGCTCCATCTCCTTTCGCACGACACTTCT
CAACACTCATCCTGCTTCCTCCCTCGCGCGTGACGGACCAAAACCACAAC
CAGGTACGGGCGAGCCACGACCGACGCCACTTCGCCCGGTGCCAGGCGGG
CCGCCGTACACTGCCTGTGCCAGTTGCTAGCGGAGATGTCGGCAAGGCAG
CCGTTTAGCTCGCCGGCACCCATGATCGTCGTCTCCCTGACGGCCGAGAA
CTTTCGAGTCCCCCCCTCGCCGTACCTGCGTCCATGCCATTCCTCGCAGT
TCCCGCCGTCTACTCCCCTCCCTGACTCGATCCTCCTCAACAAGGGTATC
GACGGCTCGATGATGAGGCCGGGCCGTGCCACCGCCGCCCCCCTCAGCGT
CCGGTGGCTTGATATTGAATTGGAGGAGGAGGAGGAGGCCCGAAGGCGCG
AGCGGGGCGCTAGGCTGGCGGAGGAGGAGGAGGAGGAGGTCCGCAGACGC
GAGCTGGACGCCATGTTGAGCGCTGGTGGCGGCGACGGCGGTACAGAGGG
GGGCTCTTCGTGGGCGGTCCACCCAGAGGCTGCGGCGGTTGAGGGGGCCC
CCCGCCGCTGGGAGAGCACCAGGGCGAGGCTGGCCCGGAAGGCCCGCGAA
GCGGCTGCGGCGGCTGAAGCGGCTGCCGCCGCCACCACCGTCGACGAGGA
GGAGGGTGCCACCGGCGGTGAGGAAGAGGAAGAGCAGGAGAGTGCCTCGT
CGACGATCCAGCCGGAGGCTACGGCGGATTAGGGGGGCCAGAAAGCCCCC
CGCCAGAAGAGCAAAGGGGCGAGGCTGGCCCGGGAGGCGAGAGAAGCGGC
GGCCGCCTCGTCGTCCTCACAGTAGTGGGGCCGATACGCGTTGTTACATG
AACGGACCCCGTTTGATGGTAGACGTGTACAACTGTTTGAAAGCACGTGA
GTGTCCTTTATTGGGTGATTTACCGCAACATTTCGGGTTCACGGCGGAAG
GGAGGTAGATAGGGGGTAAGTAGTACTCAGGCGTGGGCGCGAGTGGTTTG
CGTGGTCCTGATGAATTGCAGAATACTTCTGCAGTATGCATCCGCTTGTT
CAGAATTTACAAGGAAGGGCCCTCTCGCTGGTATCGCCGGCGGCAGAGGG
AAGGGCCAACCAATATGCATGTGTGATTTATCTACCTTTAAGAGTTGTAG
CAAGCGTGTTTTTCTTGTGCCTCGTATCTGGGTTCGACAGATTGATGCAA
ACGCGGTGTAAAAATGGACAATGACACAGGTTGTCGAATACTGAGTGATG
ATGGAGTGTGGAAAGGTGCTTTCAATGGGATGAAGGCAAAGGTCGAGAAA
ACGTCCCCTGTGGTTCCACGAGGGCGTGTACTGCATGGCGTGAGGGTGTA
TGTATGTATGTTGACAGCATTACATCCACAGGTGTTGGTGTTGCTGTCGT
CGGTGTAGGAGGCATGTCAGCGGTTGGTGCTGGCCAAGGTGTGCGTTGGG
TGCCGAGGTGAACAACAATATTTACACGGGTCTGATAGAAAACGTCAAAT
ATCTAATGTGTTGATGTTTCCCGGATTTAAACAACCTGTGGCAGGTGTGT
TTACACTTGTGTGCTCTTCTTGTTTTATCGCATGTCCGTCGTAGTGTACC
CTTGGGCACGCTATACGGTAGCAATGTTGATTTGTGTTTTCGACTGGCTT
GGATGTATTTTACTTCATGAAGCTTTGTTGTTGCGGACCAATACCCGAGT
CCGTTGTGAGTGTGCCCAAGAAGCGAACGTTGGACTATTGGTCGTTTCTT
GCACAGGTGAGAATTTAGCCGGGGAACCACACCCTTGGGAGCGTGGAACG
AACGGTGAACGTATGCAAGGTAGATAAGAGGTAGGTGCGTTTGTGTGTTG
AGAGCGCCGTCCACTTTGTCGATGTGAGTACTATCGTGGGCACCCCTCGG
GGAGAATCGATACCTGACATACTTTCCGTTGTCGTTAAGGGTGGTTCTCA
ACGCTTCGGAAAAGTAGCGAAATTTTCCACGCGACGGTGACAAGAAAACC
CGGCGTTTTTTTACTTGTTCTATTCGTAATGTCATGGCAAGAAGTACGTT
TCCTT
back to top

Coding sequence (CDS) from alignment at Scaffold_614:79128..84782-

>EsuBft652_3a-0001 ID=EsuBft652_3a-0001|Name=EsuBft652_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=597bp|location=Sequence derived from alignment at Scaffold_614:79128..84782- (Ectocarpus subulatus male Bft15b)
ATGTCGGCAAGGCAGCCGTTTAGCTCGCCGGCACCCATGATCGTCGTCTC
CCTGACGGCCGAGAACTTTCGAGTCCCCCCCTCGCCGTACCTGCGTCCAT
GCCATTCCTCGCAGTTCCCGCCGTCTACTCCCCTCCCTGACTCGATCCTC
CTCAACAAGGGTATCGACGGCTCGATGATGAGGCCGGGCCGTGCCACCGC
CGCCCCCCTCAGCGTCCGGTGGCTTGATATTGAATTGGAGGAGGAGGAGG
AGGCCCGAAGGCGCGAGCGGGGCGCTAGGCTGGCGGAGGAGGAGGAGGAG
GAGGTCCGCAGACGCGAGCTGGACGCCATGTTGAGCGCTGGTGGCGGCGA
CGGCGGTACAGAGGGGGGCTCTTCGTGGGCGGTCCACCCAGAGGCTGCGG
CGGTTGAGGGGGCCCCCCGCCGCTGGGAGAGCACCAGGGCGAGGCTGGCC
CGGAAGGCCCGCGAAGCGGCTGCGGCGGCTGAAGCGGCTGCCGCCGCCAC
CACCGTCGACGAGGAGGAGGGTGCCACCGGCGGTGAGGAAGAGGAAGAGC
AGGAGAGTGCCTCGTCGACGATCCAGCCGGAGGCTACGGCGGATTAG
back to top