EsuBft652_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft652_13a-0001
Unique Name	EsuBft652_13a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_614	contig	Scaffold_614:161181..162912 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft652_13
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Length	105
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft652_13a	EsuBft652_13a	Ectocarpus subulatus male Bft15b	gene	Scaffold_614 161181..162912 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft652_13a-0001-exon	agat-exon-57741	Ectocarpus subulatus male Bft15b	exon	Scaffold_614 161181..161717 -
EsuBft652_13a-0001-exon	agat-exon-57742	Ectocarpus subulatus male Bft15b	exon	Scaffold_614 162076..162204 -
EsuBft652_13a-0001-exon	EsuBft652_13a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_614 162523..162912 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft652_13a-0001-exon	agat-three_prime_utr-19739	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_614 161181..161672 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft652_13a-0001-cds	EsuBft652_13a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_614 161673..161717 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft652_13a-0001	EsuBft652_13	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_614 161673..162912 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_614:161181..162912-
coding sequence from alignment at Scaffold_614:161181..162912-

spliced messenger RNA

>EsuBft652_13a-0001 ID=EsuBft652_13a-0001|Name=EsuBft652_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1056bp|location=Sequence derived from alignment at Scaffold_614:161181..162912- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTTGGGGGGTGCGCGGACTCCGGCGGGAGACGGGGCTACGGGGCAT
GGAGCGCGGAATCAGGACGATGCAGCTGACGGAGGGTGGGAGCCGCCCGC
ACAAGGGGGGGGGGGGGGAGAGAATCCCCAGGGAGGACTTACGTCAGACG
TGGGAGCTCGCGCTGAGGCGGCCCGACAGGCAGGAGCAGTGGGACGGGAT
GAGGGGGAAACACACGATGAGGAGGGGGCGGAGGTTAGGCTTCCCAGCGA
GGAAGATGGGTCGGAGTCAGGGGGTCCGACCCCACCCGCGGGAGCAGTGG
GAAACGATGATGAGGAAACACCCGAGGAAGAAGGGGGAGATGTTGGGAAT
CCCGGCGAGGAGGGTGGATCGGAGTCACAGCGTCGCTTGGATAACTACGA
CGACGTTTGGGAGGAAGGCTCGCAGGACAGCGAAGGAGACGACGATTCGC
TTGACGGTATGGATGATATCGGGATCGACCTCGACGGAGACTTGCTGGTG
GACGACGAGCCTTAGTTATGTGAATGGTGGAACCCATTGCGTGACCCACG
AAGATCTACCGTAACGGAGTGCAGCTGCATTCGGCTGTTGTGTTCTCCTC
GTAGAAATGAGAATTGCCACAAGTGGTTTTCGGCCATGTGGGTTTGCTAC
GCAGCACAATTGCGTGTGTGTGGTACAGTCGAAGTCTACACTTCGGTGTC
TGCGTCTTTTTTTTTTTGTGTGTGGTGCCAGGTTCAAAACAGTCCAGTTT
TTTTTTTGGGCACACATGGGTTTGTGTAGTCGAAGTCAACACTTTGGTGT
GTGTGTCTTTTTTTTTGTTGTGTGTGGTGCCAGGTTCAACACAGTGCACG
TCTTTTTTGTTGGGCGCACATGTATGCGTGCGTGTGTCGTACACTCGAGG
TCAACACTTTGGTGCATCCTGAGTCATTTTTTTTGTTAGGAGTGGTGCCA
GGTTCAAGACATGTGCACGCGGATTTTTTTGGGCGCACTTCTATGCGTGC
GTGTGTTCAACACACAGTGCACGTATTTTTTTTTTCTTGGCGCACATGTA
TGCGTG

protein sequence of EsuBft652_13a-0001

>EsuBft652_13 ID=EsuBft652_13|Name=EsuBft652_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=187bp
MLWGVRGLRRETGLRGMERGIRTMQLTEGGSRPHKGGGGERIPREDLRQT
WELALRRPDRQEQWDGMRGKHTMRRGRRLGFPARKMGRSQGVRPHPREQW
ETMMRKHPRKKGEMLGIPARRVDRSHSVAWITTTTFGRKARRTAKETTIR
LTVWMISGSTSTETCWWTTSLSYVNGGTHCVTHEDLP

mRNA from alignment at Scaffold_614:161181..162912-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft652_13a-0001 ID=EsuBft652_13a-0001|Name=EsuBft652_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1732bp|location=Sequence derived from alignment at Scaffold_614:161181..162912- (Ectocarpus subulatus male Bft15b)
ATGCTTTGGGGGGTGCGCGGACTCCGGCGGGAGACGGGGCTACGGGGCAT
GGAGCGCGGAATCAGGACGATGCAGCTGACGGAGGGTGGGAGCCGCCCGC
ACAAGGGGGGGGGGGGGGAGAGAATCCCCAGGGAGGACTTACGTCAGACG
TGGGAGCTCGCGCTGAGGCGGCCCGACAGGCAGGAGCAGTGGGACGGGAT
GAGGGGGAAACACACGATGAGGAGGGGGCGGAGGTTAGGCTTCCCAGCGA
GGAAGATGGGTCGGAGTCAGGGGGTCCGACCCCACCCGCGGGAGCAGTGG
GAAACGATGATGAGGAAACACCCGAGGAAGAAGGGGGAGATGTTGGGAAT
CCCGGCGAGGAGGGTGGATCGGAGTCACAGCGTCGCTTGGGTGAGCGGCT
GCGCTTGTGCATTGTTGACGGCGCCGAGATATACATTCTACTTTGTTGAT
GTTGGCTACCCCTCAGGGGCCACCCAAGCACCCGCATACCACAACACTGT
CGTAAGGTTTCTTCTTCATACTTGTACTTTGCATGTTTGAGCAGCTGAAT
CCCGCCGAATTTACCTGACTGATCATCCTTTCCAAGACAACACAGTAGTA
TAGTGGGGACGGGAGAGACGTCATCGCCTACTTGGTAAAATGTATTCCCG
AAAAATGATACGAGGTACTACCGAGCAACTTCTCCTGGCGCATTGATCGA
TTTCCTAGATAACTACGACGACGTTTGGGAGGAAGGCTCGCAGGACAGCG
AAGGAGACGACGATTCGCTTGACGGTATGGATGATATCGGGATCGACCTC
GACGGAGACTTGCTGGTGGACGACGAGCCTTAGTTATGTGCGTTGGTATC
CGACCGTCAATATAACGCCGTTAGTTTAACGGCTTGTGCCTTGCGACAAT
TAAATTTAGCACATATCGTAGGAGAGGCTTTCTGTGTGCCATGCGCAGAA
AACACAGCCCGGTTCATCATATGCCTCCCCTCCAACAACAAAAAACGGTA
TATTGCACCAACAACACTTCGAAAATACAACGGGTAGCCCGCATTTTTTT
TGGCGCCTTATGCGTCCCCCCCAGCATTGTCAGGGATACCATGGCATTAG
CCCGGGTTTCGTTAGGCGTTTTTTCCGCAAAACAGCTTACGCGAAGATTC
CCCTTCCCGACTTTTCGGTGTCTCGGTCCGATATTATTCTCGCAGGTGAA
TGGTGGAACCCATTGCGTGACCCACGAAGATCTACCGTAACGGAGTGCAG
CTGCATTCGGCTGTTGTGTTCTCCTCGTAGAAATGAGAATTGCCACAAGT
GGTTTTCGGCCATGTGGGTTTGCTACGCAGCACAATTGCGTGTGTGTGGT
ACAGTCGAAGTCTACACTTCGGTGTCTGCGTCTTTTTTTTTTTGTGTGTG
GTGCCAGGTTCAAAACAGTCCAGTTTTTTTTTTGGGCACACATGGGTTTG
TGTAGTCGAAGTCAACACTTTGGTGTGTGTGTCTTTTTTTTTGTTGTGTG
TGGTGCCAGGTTCAACACAGTGCACGTCTTTTTTGTTGGGCGCACATGTA
TGCGTGCGTGTGTCGTACACTCGAGGTCAACACTTTGGTGCATCCTGAGT
CATTTTTTTTGTTAGGAGTGGTGCCAGGTTCAAGACATGTGCACGCGGAT
TTTTTTGGGCGCACTTCTATGCGTGCGTGTGTTCAACACACAGTGCACGT
ATTTTTTTTTTCTTGGCGCACATGTATGCGTG

Coding sequence (CDS) from alignment at Scaffold_614:161181..162912-

>EsuBft652_13a-0001 ID=EsuBft652_13a-0001|Name=EsuBft652_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=564bp|location=Sequence derived from alignment at Scaffold_614:161181..162912- (Ectocarpus subulatus male Bft15b)
ATGCTTTGGGGGGTGCGCGGACTCCGGCGGGAGACGGGGCTACGGGGCAT
GGAGCGCGGAATCAGGACGATGCAGCTGACGGAGGGTGGGAGCCGCCCGC
ACAAGGGGGGGGGGGGGGAGAGAATCCCCAGGGAGGACTTACGTCAGACG
TGGGAGCTCGCGCTGAGGCGGCCCGACAGGCAGGAGCAGTGGGACGGGAT
GAGGGGGAAACACACGATGAGGAGGGGGCGGAGGTTAGGCTTCCCAGCGA
GGAAGATGGGTCGGAGTCAGGGGGTCCGACCCCACCCGCGGGAGCAGTGG
GAAACGATGATGAGGAAACACCCGAGGAAGAAGGGGGAGATGTTGGGAAT
CCCGGCGAGGAGGGTGGATCGGAGTCACAGCGTCGCTTGGATAACTACGA
CGACGTTTGGGAGGAAGGCTCGCAGGACAGCGAAGGAGACGACGATTCGC
TTGACGGTATGGATGATATCGGGATCGACCTCGACGGAGACTTGCTGGTG
GACGACGAGCCTTAGTTATGTGAATGGTGGAACCCATTGCGTGACCCACG
AAGATCTACCGTAA