EsuBft652_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft652_10a-0001
Unique NameEsuBft652_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_614contigScaffold_614:149393..152904 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog81985.XP_006289829.1
ProteomeIdEsuBft652_10
Protein domainsSSF52047
Protein domainsSIGNAL_PEPTIDE
Protein domainsSignalP-noTM
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsG3DSA
Protein domainsIPR006553
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsPTHR23125
Protein domainsSIGNAL_PEPTIDE_N_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl35493|Streptophyta
Length180
Hectar predicted targeting categoryother localisation
Evalue3.71e-05
EggNOG OGsKOG4341@1|root,KOG4341@2759|Eukaryota,37N4E@33090|Viridiplantae,3GEK2@35493|Streptophyta,3HZ14@3699|Brassicales
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K10268
DescriptionF-Box protein
COG categoryS
BRITEko00000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft652_10aEsuBft652_10aEctocarpus subulatus male Bft15bgeneScaffold_614 149393..152904 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft652_10a-0001EsuBft652_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_614 149393..152877 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft652_10a-0001-exonagat-exon-57733Ectocarpus subulatus male Bft15bexonScaffold_614 149393..149428 -
EsuBft652_10a-0001-exonagat-exon-57734Ectocarpus subulatus male Bft15bexonScaffold_614 149580..149789 -
EsuBft652_10a-0001-exonagat-exon-57732Ectocarpus subulatus male Bft15bexonScaffold_614 150541..151615 -
EsuBft652_10a-0001-exonagat-exon-57731Ectocarpus subulatus male Bft15bexonScaffold_614 151958..152164 -
EsuBft652_10a-0001-exonEsuBft652_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_614 152633..152904 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft652_10a-0001-cdsEsuBft652_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_614 149393..149428 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft652_10a-0001-exonagat-five_prime_utr-12612Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_614 152878..152904 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft652_10a-0001 ID=EsuBft652_10a-0001|Name=EsuBft652_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1800bp|location=Sequence derived from alignment at Scaffold_614:149393..152904- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGGCGGACTGGTCACACAGTAAGCAGAATGATGCGAACAGGTAGTATCAC
CGGCCAGGCTCTGACGACTCTTTCTGCTGCGCCGTGCGCGCCGCTGCTGG
TGTGCCTCGGGCTTCGAAATCTGCACTGCGTCGGGAACATGGACCTGCGA
GCCCTGGGCACCCACTTCCCTAGCTTGAGGAGGCTCGACCTGGCAGGGCT
CGTCAAGGTGGACGACGACGTTCTCAGGGCTCTCTCGTCGACGCTGTCCC
TCACGCACATAGATATATCCAGAGCACACCGCGTTTCTGTAAGCGGAGTG
TCAGCGCTGGCCGTAGGGAGCCCGGAGCTGGCATGCATCTCACTGCACGG
AATTGCTCTGGTGGACGAGGCCGTTCGAGCGCTGTGCGACGCCTGCCCCA
GGCTCCGACACATCAACTTGTCCTTAACGCGCGTGACGGAGCGGTCCCTC
CGCCTTCTCGCCACGAAGGATAGCTTGAGATGGGTCAATGTTCGTTGCTG
CAGCGGTATTGGTAACGACGCCGTTACTGCCAAGGTCTTGGCGGACTTCC
GAAGTCGCTTGTCGCCACCCAAGCACCCGAGAGACCGTGGAACGGTCCTA
GGAATGGAGCGCCCCGAGCCTCAGTCGAGGACGCCCGCACCAAGCTGCTC
CCGCCGCGAACCTCTCGGTGCCAACAGCTCCGGCGGTAGCCTAGACAGCG
GCTGCGGCGGCTACCAAGGTCCACCGGACGACGTTGGGCAGGATTTGGCT
ATTCGCGCGCAGGCGGCGCTTGCCCTCAGGGTGTCGTCACCCAGTAGTGA
CCGGTTACACCAATTAGCGCCAGGAAACGGCGGCGGTGGTGGTGGCACGA
AAACCGCCTCCTCTGATGTTGAATATTGTAACGGTAGCATCGTTCGTGGT
GACGCCCCGATAGATCCCAACGGTAAGGCCGGTGGCGCGACAAAGGGTGG
ACGGGCGCCGCCCTCTGCTGAAGGAGGTTATACCCGGCGTCTTGACACAC
CAGGGGCAGCGCTAGTGAGTTTCGGGGAGGGGGGGGAGATTGCGCCGCGG
CCGTCGTGCAGGAGACCCGGCGGCATCAGAGCTTCACCGGCGAAGCCTAC
TCCTGCTGAGAGGCTTGCTGGAGATTCGAGCCAGGGGACGACGTTATCAC
CAGTGGCTCCGTTGCTGTTGGCATCGACTTCGCCCGCGCCGGTGGACCTC
GACACTGGCGAGCGCGGCAAGGGCCGGCGAGGGGCCGCGATTCGACAAGA
AGGGAAAGGGCACGCGCTAGCGGAAGAAGCTTCAGCGGCACAATCGACAG
CAGCCGAAGAAGAAGCAGTACCGTCGCTCGCTGGCGAACCAGCCGGTGCG
TCGTCCCGCGACCATCCGCCGCCGTTGCTCCCGACGGGTGTCGGCGACCT
CTCACTAGGCCGGCATCGTCGCCATGGCGAAAGCCGTGGTTCGCCTTCGA
GCGAAGGAACAAAAAGAGGAGAAGGTTCCACTGGCACGGGATTTCAGGAC
GGAGGGCGCGGCGTTGCGAAGGGTCGAGGTGGTGGTGGAGACCGCAGAGT
CGAGGGAGAAGTGGTGGTGCCGTTCGACTGGGACACCGTCCCCCGAGGCA
GCGGGGTGGGAGTTCTCGGGTCTTGGAAGGGATTCCGCGGCCTATCGGGG
GACCTGGTGAAGAACGTCATTCGAGAGCTGCACCCCCACGCTCAGGTCGA
GTTCCGTCCCGGGTACGACGTCGTGTTCGGGCCCCACTCGCGCACGAATA
CCCACGGCTACCTGGTCGCGAAATCGAGAGCTGCCCAGCCTGTGATCTAG
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protein sequence of EsuBft652_10a-0001

>EsuBft652_10 ID=EsuBft652_10|Name=EsuBft652_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=590bp
MMRTGSITGQALTTLSAAPCAPLLVCLGLRNLHCVGNMDLRALGTHFPSL
RRLDLAGLVKVDDDVLRALSSTLSLTHIDISRAHRVSVSGVSALAVGSPE
LACISLHGIALVDEAVRALCDACPRLRHINLSLTRVTERSLRLLATKDSL
RWVNVRCCSGIGNDAVTAKVLADFRSRLSPPKHPRDRGTVLGMERPEPQS
RTPAPSCSRREPLGANSSGGSLDSGCGGYQGPPDDVGQDLAIRAQAALAL
RVSSPSSDRLHQLAPGNGGGGGGTKTASSDVEYCNGSIVRGDAPIDPNGK
AGGATKGGRAPPSAEGGYTRRLDTPGAALVSFGEGGEIAPRPSCRRPGGI
RASPAKPTPAERLAGDSSQGTTLSPVAPLLLASTSPAPVDLDTGERGKGR
RGAAIRQEGKGHALAEEASAAQSTAAEEEAVPSLAGEPAGASSRDHPPPL
LPTGVGDLSLGRHRRHGESRGSPSSEGTKRGEGSTGTGFQDGGRGVAKGR
GGGGDRRVEGEVVVPFDWDTVPRGSGVGVLGSWKGFRGLSGDLVKNVIRE
LHPHAQVEFRPGYDVVFGPHSRTNTHGYLVAKSRAAQPVI
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mRNA from alignment at Scaffold_614:149393..152904-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft652_10a-0001 ID=EsuBft652_10a-0001|Name=EsuBft652_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3512bp|location=Sequence derived from alignment at Scaffold_614:149393..152904- (Ectocarpus subulatus male Bft15b)
CGGCGGACTGGTCACACAGTAAGCAGAATGATGCGAACAGGTAGTATCAC
CGGCCAGGCTCTGACGACTCTTTCTGCTGCGCCGTGCGCGCCGCTGCTGG
TGTGCCTCGGGCTTCGAAATCTGCACTGCGTCGGGAACATGGACCTGCGA
GCCCTGGGCACCCACTTCCCTAGCTTGAGGAGGCTCGACCTGGCAGGGCT
CGTCAAGGTGGACGACGACGTTCTCAGGGCTCTCTCGTCGACGCTGTCCC
TCACGCACATAGATATATCCAGGTAAACGCACTGCAGTGGGGGTCTCAGT
TTAGCGACCCCCGGATTAGCGACATGCCTTGTTTAGCGCCTACAAAATCA
CGTCGCACCCCCGCACCCCGGCGCAGCTGCTATGTTGTTGGTAGTTCGGT
TTTGCGACCTGCCCTGAATAGCGACCACATTTCGTCGTGACACTAGGGGT
CATTTAACCAGGGCCCCCACTGTACACGAGTTCCCACGTATTTAAATCAT
CCATCCCTTCACGCACACGCTCGGAGGTTTCACAGCAAGATGAGGGATGG
ATATGCTTCATCGGCATTACCCCAAGTCGCGTTATTCATGGCATGCAGAA
TGTGAGAATATTCAGCGTGTGGCATTCGGTCCGTCGTCCTTCCTTCGCCG
CAAGGCATCCGCGTGAACCGTTACTGTCCCTACCGACCCCCAATTGTCAC
ATACCCTCTCACGGTGCCCCCCAACACTTGTGCGGCGCAGAGCACACCGC
GTTTCTGTAAGCGGAGTGTCAGCGCTGGCCGTAGGGAGCCCGGAGCTGGC
ATGCATCTCACTGCACGGAATTGCTCTGGTGGACGAGGCCGTTCGAGCGC
TGTGCGACGCCTGCCCCAGGCTCCGACACATCAACTTGTCCTTAACGCGC
GTGACGGAGCGGTCCCTCCGCCTTCTCGCCACGAAGGATAGCTTGAGGTG
TGCCTTTCTTGAACCGGCATTGACGGCGCTGTTCGGCTGGGTAAATGAAT
AGGCGTACGGCTTCTCTGGACTCGTTTTTTTTTCGTTTGTAAGCATGTGT
TATTGTCACACTGTACTCGGGAGGTGTCCTGTCTTTCGGCAGGATATCGT
TAGACCTACCCACACAAAGTACTTTGCGATAAGCGCTTGTTTGCCTGCTT
GGACATGATTCTTCCTGTCTTTAGCCTAGGATGCTTTGCACTCTGTCCCT
CCCTCCCACCCCCGTTTGAATTGAAGATGCGTCGCTGATCCCCTCCCTTC
TTGGCTGCCCCTCACGCCACGTCGCCACCGCTCGCTCAGATGGGTCAATG
TTCGTTGCTGCAGCGGTATTGGTAACGACGCCGTTACTGCCAAGGTCTTG
GCGGACTTCCGAAGTCGCTTGTCGCCACCCAAGCACCCGAGAGACCGTGG
AACGGTCCTAGGAATGGAGCGCCCCGAGCCTCAGTCGAGGACGCCCGCAC
CAAGCTGCTCCCGCCGCGAACCTCTCGGTGCCAACAGCTCCGGCGGTAGC
CTAGACAGCGGCTGCGGCGGCTACCAAGGTCCACCGGACGACGTTGGGCA
GGATTTGGCTATTCGCGCGCAGGCGGCGCTTGCCCTCAGGGTGTCGTCAC
CCAGTAGTGACCGGTTACACCAATTAGCGCCAGGAAACGGCGGCGGTGGT
GGTGGCACGAAAACCGCCTCCTCTGATGTTGAATATTGTAACGGTAGCAT
CGTTCGTGGTGACGCCCCGATAGATCCCAACGGTAAGGCCGGTGGCGCGA
CAAAGGGTGGACGGGCGCCGCCCTCTGCTGAAGGAGGTTATACCCGGCGT
CTTGACACACCAGGGGCAGCGCTAGTGAGTTTCGGGGAGGGGGGGGAGAT
TGCGCCGCGGCCGTCGTGCAGGAGACCCGGCGGCATCAGAGCTTCACCGG
CGAAGCCTACTCCTGCTGAGAGGCTTGCTGGAGATTCGAGCCAGGGGACG
ACGTTATCACCAGTGGCTCCGTTGCTGTTGGCATCGACTTCGCCCGCGCC
GGTGGACCTCGACACTGGCGAGCGCGGCAAGGGCCGGCGAGGGGCCGCGA
TTCGACAAGAAGGGAAAGGGCACGCGCTAGCGGAAGAAGCTTCAGCGGCA
CAATCGACAGCAGCCGAAGAAGAAGCAGTACCGTCGCTCGCTGGCGAACC
AGCCGGTGCGTCGTCCCGCGACCATCCGCCGCCGTTGCTCCCGACGGGTG
TCGGCGACCTCTCACTAGGCCGGCATCGTCGCCATGGCGAAAGCCGTGGT
TCGCCTTCGAGCGAAGGAACAAAAAGAGGAGAAGGTTCCACTGGCACGGG
ATTTCAGGACGGAGGGCGCGGCGTTGCGAAGGGTCGAGGTGGTGGTGGAG
ACCGCAGAGTCGAGGTGCGAATCGATGGAGTCGTTGGTTCTACTTTTGGT
GTGTCTCCAGTGCTGCTGTAGGGTTGCTGTTCTCGCCGACTGTGTACCGC
ACTCCTAGAAACGGCTGGTAATATTTTCCCGCGCTCGTTGTGAAATTTTT
TGCGGGTATTCCACCTGGAGTGTCTGCCTCTTTGCCAACTCGCGGCTGGG
GGACCATTGTATCTCTCTCTCTTTTGAGAATTGGAGGGGATTGTTTGAAT
ACCGACCCGCTGGAGGTGATGCCACTGGTGAAATCTCACACCACCCAGCA
ACAAGACTAGTCTCGAAGATTCCGACACGAAATCTCGGAGAGCTGTCGTC
TAGCGGAGAATCTTGGTCTTCTTTCAAGGCTCATTTCAAAAAGTCATATG
CCCAAGATCTGGCCGACCTGTGATACGCGGATGTCCATGCTTTTTATTTT
ACTGCAGTTACATGGTGTGGGCACTCCCAACAAACCCGTCTGTCCGTTGC
TATCGATCATGTTCGTTTGGTCACCAGAGCTGAGCACGCAGGCTCGACAC
GATCGCGTGCAGAGCTCTCAAACGTTGGGGAGTGGTGGTCTTGGTAGCAA
CAATAGCTCTCGGAGTGACACCGGTTCGCGTGGTCAGTGGTCTCGACACC
ACCCGGCCCGACACACGACTCCCCCTCCCTGCCTCGCTGTGAAAGGGATA
CATGCTCTATCTTCTCAACTTACTATAGCTGGCCTACTACCGATTCCGCT
CCCCCCCTTTTGTAGGGAGAAGTGGTGGTGCCGTTCGACTGGGACACCGT
CCCCCGAGGCAGCGGGGTGGGAGTTCTCGGGTCTTGGAAGGGATTCCGCG
GCCTATCGGGGGACCTGGTGAAGAACGTCATTCGAGAGCTGCACCCCCAC
GCTCAGGTCGAGTTCCGTCCCGGGTACGACGTCGTGTTCGGGCCCCACTC
GCGCACGAATACCCACGGCTACCTGGTGAGGTCCTGTCTCCGCCCGTTGC
GAGACATGGTGTTGTTTGAAAATTCAAAGGAGTGCTTGCGATTGCGGGTG
GTGCTGTTGGTTCTCGCGTTTCATCGCCGAGGTGTCCGCCGACCAACTCG
TACGTAGCCCCGCGAGCATGGCGCAGGTCGCGAAATCGAGAGCTGCCCAG
CCTGTGATCTAG
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Coding sequence (CDS) from alignment at Scaffold_614:149393..152904-

>EsuBft652_10a-0001 ID=EsuBft652_10a-0001|Name=EsuBft652_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1773bp|location=Sequence derived from alignment at Scaffold_614:149393..152904- (Ectocarpus subulatus male Bft15b)
ATGATGCGAACAGGTAGTATCACCGGCCAGGCTCTGACGACTCTTTCTGC
TGCGCCGTGCGCGCCGCTGCTGGTGTGCCTCGGGCTTCGAAATCTGCACT
GCGTCGGGAACATGGACCTGCGAGCCCTGGGCACCCACTTCCCTAGCTTG
AGGAGGCTCGACCTGGCAGGGCTCGTCAAGGTGGACGACGACGTTCTCAG
GGCTCTCTCGTCGACGCTGTCCCTCACGCACATAGATATATCCAGAGCAC
ACCGCGTTTCTGTAAGCGGAGTGTCAGCGCTGGCCGTAGGGAGCCCGGAG
CTGGCATGCATCTCACTGCACGGAATTGCTCTGGTGGACGAGGCCGTTCG
AGCGCTGTGCGACGCCTGCCCCAGGCTCCGACACATCAACTTGTCCTTAA
CGCGCGTGACGGAGCGGTCCCTCCGCCTTCTCGCCACGAAGGATAGCTTG
AGATGGGTCAATGTTCGTTGCTGCAGCGGTATTGGTAACGACGCCGTTAC
TGCCAAGGTCTTGGCGGACTTCCGAAGTCGCTTGTCGCCACCCAAGCACC
CGAGAGACCGTGGAACGGTCCTAGGAATGGAGCGCCCCGAGCCTCAGTCG
AGGACGCCCGCACCAAGCTGCTCCCGCCGCGAACCTCTCGGTGCCAACAG
CTCCGGCGGTAGCCTAGACAGCGGCTGCGGCGGCTACCAAGGTCCACCGG
ACGACGTTGGGCAGGATTTGGCTATTCGCGCGCAGGCGGCGCTTGCCCTC
AGGGTGTCGTCACCCAGTAGTGACCGGTTACACCAATTAGCGCCAGGAAA
CGGCGGCGGTGGTGGTGGCACGAAAACCGCCTCCTCTGATGTTGAATATT
GTAACGGTAGCATCGTTCGTGGTGACGCCCCGATAGATCCCAACGGTAAG
GCCGGTGGCGCGACAAAGGGTGGACGGGCGCCGCCCTCTGCTGAAGGAGG
TTATACCCGGCGTCTTGACACACCAGGGGCAGCGCTAGTGAGTTTCGGGG
AGGGGGGGGAGATTGCGCCGCGGCCGTCGTGCAGGAGACCCGGCGGCATC
AGAGCTTCACCGGCGAAGCCTACTCCTGCTGAGAGGCTTGCTGGAGATTC
GAGCCAGGGGACGACGTTATCACCAGTGGCTCCGTTGCTGTTGGCATCGA
CTTCGCCCGCGCCGGTGGACCTCGACACTGGCGAGCGCGGCAAGGGCCGG
CGAGGGGCCGCGATTCGACAAGAAGGGAAAGGGCACGCGCTAGCGGAAGA
AGCTTCAGCGGCACAATCGACAGCAGCCGAAGAAGAAGCAGTACCGTCGC
TCGCTGGCGAACCAGCCGGTGCGTCGTCCCGCGACCATCCGCCGCCGTTG
CTCCCGACGGGTGTCGGCGACCTCTCACTAGGCCGGCATCGTCGCCATGG
CGAAAGCCGTGGTTCGCCTTCGAGCGAAGGAACAAAAAGAGGAGAAGGTT
CCACTGGCACGGGATTTCAGGACGGAGGGCGCGGCGTTGCGAAGGGTCGA
GGTGGTGGTGGAGACCGCAGAGTCGAGGGAGAAGTGGTGGTGCCGTTCGA
CTGGGACACCGTCCCCCGAGGCAGCGGGGTGGGAGTTCTCGGGTCTTGGA
AGGGATTCCGCGGCCTATCGGGGGACCTGGTGAAGAACGTCATTCGAGAG
CTGCACCCCCACGCTCAGGTCGAGTTCCGTCCCGGGTACGACGTCGTGTT
CGGGCCCCACTCGCGCACGAATACCCACGGCTACCTGGTCGCGAAATCGA
GAGCTGCCCAGCCTGTGATCTAG
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