EsuBft641_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft641_7a-0001
Unique NameEsuBft641_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_389contigScaffold_389:389479..390249 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog698440.XP_007294870.1
ProteomeIdEsuBft641_7
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Notecopia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon2
Max annot lvl4751|Fungi
Length441
Hectar predicted targeting categoryother localisation
Evalue3.95e-10
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3QNZW@4890|Ascomycota
Date last modified2016-06-14
Date creation2016-06-14
Descriptionretrotransposon
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0003824
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft641_7aEsuBft641_7aEctocarpus subulatus male Bft15bgeneScaffold_389 389479..390249 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft641_7a-0001-exonagat-exon-65587Ectocarpus subulatus male Bft15bexonScaffold_389 389479..389588 +
EsuBft641_7a-0001-exonEsuBft641_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_389 389919..390249 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft641_7a-0001-cdsEsuBft641_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_389 389479..389588 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft641_7a-0001EsuBft641_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_389 389479..390249 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft641_7a-0001 ID=EsuBft641_7a-0001|Name=EsuBft641_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=441bp|location=Sequence derived from alignment at Scaffold_389:389479..390249+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGACATGGGGGGAGTCAGCCTCATTCTAGGCATGCAAGTCACGCG
CAGCTACGAGGAAGGCACGCTGACCGTTGCGCAGAACAACTGCATCAAGA
CTGCAACCCTATTTGGAACCAAGACGCAGTCTCTCACGGCCCAATCGACC
GTCGAGAGCGAACTCCAAGGCAATAGCTACGCTACCAGGGAGGCCGTATA
CCTCTCCAACCTACTCATGGAGTTCAAGTTCGACATCTTCAAGCCTATCC
CCATTTGCAGCGACAGCTCGGGTGCTCTCAGCCTTGCCGCCAACTCAATG
TTCAGCTCGAGGACCACGCACATCGCGCTGCGGTTCTTCTTCCTTCGGGA
ACTGATCAAGCGGCGCCGCATCACGGTTAAGCATTTGGACCGGAACAAGT
CTATCTCCATTCTCGAACAGATCGAAGATTTCGGATGCTAG
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protein sequence of EsuBft641_7a-0001

>EsuBft641_7 ID=EsuBft641_7|Name=EsuBft641_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=146bp
MTDMGGVSLILGMQVTRSYEEGTLTVAQNNCIKTATLFGTKTQSLTAQST
VESELQGNSYATREAVYLSNLLMEFKFDIFKPIPICSDSSGALSLAANSM
FSSRTTHIALRFFFLRELIKRRRITVKHLDRNKSISILEQIEDFGC
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mRNA from alignment at Scaffold_389:389479..390249+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft641_7a-0001 ID=EsuBft641_7a-0001|Name=EsuBft641_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=771bp|location=Sequence derived from alignment at Scaffold_389:389479..390249+ (Ectocarpus subulatus male Bft15b)
ATGACGGACATGGGGGGAGTCAGCCTCATTCTAGGCATGCAAGTCACGCG
CAGCTACGAGGAAGGCACGCTGACCGTTGCGCAGAACAACTGCATCAAGA
CTGCAACCCTGTTAGCACCCTAGGATATGGACCGTAACTCTCGACTGATA
AGCCAGCGGACAAGCTACTCGGAGCGGCAGACCAACTGTACCAGTCCATC
ACAGGCAGCCTGCTCTATCTGGCTTAAAACACCAGGTACGACCTGTACGC
AGTCAACCAGCTGACGAGGGCATGCAGCACGTGCTTCAGTACCTTTACGG
AACGCCGGACATGCCCATCGTATTGAAGCGAGGGCAATTCCGCATCGCAG
CATTCGCCGACGTTTTTTCGCAGCTAACCCGGCCAGCAAGAAGTCTACCA
CAGGGTACCTGTACTACTCTCTGGGATGATGTACCATCAGATTTGGAACC
AAGACGCAGTCTCTCACGGCCCAATCGACCGTCGAGAGCGAACTCCAAGG
CAATAGCTACGCTACCAGGGAGGCCGTATACCTCTCCAACCTACTCATGG
AGTTCAAGTTCGACATCTTCAAGCCTATCCCCATTTGCAGCGACAGCTCG
GGTGCTCTCAGCCTTGCCGCCAACTCAATGTTCAGCTCGAGGACCACGCA
CATCGCGCTGCGGTTCTTCTTCCTTCGGGAACTGATCAAGCGGCGCCGCA
TCACGGTTAAGCATTTGGACCGGAACAAGTCTATCTCCATTCTCGAACAG
ATCGAAGATTTCGGATGCTAG
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Coding sequence (CDS) from alignment at Scaffold_389:389479..390249+

>EsuBft641_7a-0001 ID=EsuBft641_7a-0001|Name=EsuBft641_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=441bp|location=Sequence derived from alignment at Scaffold_389:389479..390249+ (Ectocarpus subulatus male Bft15b)
ATGACGGACATGGGGGGAGTCAGCCTCATTCTAGGCATGCAAGTCACGCG
CAGCTACGAGGAAGGCACGCTGACCGTTGCGCAGAACAACTGCATCAAGA
CTGCAACCCTATTTGGAACCAAGACGCAGTCTCTCACGGCCCAATCGACC
GTCGAGAGCGAACTCCAAGGCAATAGCTACGCTACCAGGGAGGCCGTATA
CCTCTCCAACCTACTCATGGAGTTCAAGTTCGACATCTTCAAGCCTATCC
CCATTTGCAGCGACAGCTCGGGTGCTCTCAGCCTTGCCGCCAACTCAATG
TTCAGCTCGAGGACCACGCACATCGCGCTGCGGTTCTTCTTCCTTCGGGA
ACTGATCAAGCGGCGCCGCATCACGGTTAAGCATTTGGACCGGAACAAGT
CTATCTCCATTCTCGAACAGATCGAAGATTTCGGATGCTAG
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