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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
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| Seed ortholog | 15368.BRADI2G31610.1 |
| ProteomeId | EsuBft641_10 |
| Protein domains | IPR013103 |
| Protein domains | PTHR11439 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation] |
| Nb exon | 5 |
| Max annot lvl | 35493|Streptophyta |
| Length | 1410 |
| Evalue | 1.44e-28 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta,3M5VU@4447|Liliopsida,3IIIB@38820|Poales |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | gag-polypeptide of LTR copia-type |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
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| GO | 0003824 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft641_10a-0001 ID=EsuBft641_10a-0001|Name=EsuBft641_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1410bp|location=Sequence derived from alignment at Scaffold_389:358147..360318- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGACAAGGACTCCCTCATCTCGTCGCTCGCCACCCGGGAGGTCGTGGA
TCAAGGACGCCGCGACCTACCGACCCCGCCGCAGCTGGATCCGAGTCTTG
GAGGCCGTGGAAGCGGGGGGGCTGCGGGAGGTGCGGGGCCCGTGGATTCC
GGGGAGGGGGGGAGACCGCAGATGTTCGCAACGATGTTCGCCATCCGCGA
GGATGTGGACGCCGCTCTTCGCGCCCCGCGCCTGCCCGACAAGATGCCAG
ACCTTCCTCACTGCCTCGCCAGCGACCTCCGAGNATCAAGGACGCCGCGA
CCTACCGACCCCGCCGCAGCTGGATCCGAGTCTTGGAGGCCGTGGAAGCG
GGGGGGCTGCGGGAGGTGCGGGGCCCGTGGATTCCGGGGAGGGGGGGAGA
CCGCAGATGTTCGCAACGATCAACCAGTAGAGAACGCGATCAATGCCAAG
TGGGTCTTTAACTGTAAGGCAGACGAGTACGGATGGCCGACGAAATTCAA
GGCAAGACTTGTAGCGCGGGGGGAAATGCAGAGGGCTTCGATTGATTTTG
GAGAATTGCTTGCACCCACCGTTTCCGTGTCTAGTGTGCGCTTGTTGGCA
GCAATAGCATGTGAGCAGAATCTTGACTTTTGCCATGTCGATATTCAGCA
GGCTTTTTTGCAGTCTGAGCTTGATAAGGATGTTTCCATGCGCTTACCGC
AGAGGTGTGATGCATGTGTTCTTCGATTATTGGAGGAGGGACATGTGATC
ATGATCATCGTGGTCCACTTGGATGACAGTTTTGCCGTAGGGCAGAAGGA
GAGGTGTGACAAGTTTGGCAGGGATCTCAACGCGATGGTCCCCGTGATGA
ATCTTGGAGAGTTGAGGTGGTACTCCGCGTGCTTTCACAAGAGAGACGTA
GAGAGAGGACTGTTGAGGATTTCGCAGCAGAGGATCTCTACTGTGGTTGG
CCACTCAAACAAGGCCGGACATCGTGAACGCAGTACGAGCAGTAGCTATG
CATCTCCCAAGATGGTGCACTGGAAGGCAGCACTCGGTATTTTAGGGTAC
GTACGGAGGACGGGTTGGATGAGGATTACATTTGAGAGGGGAGTCTTGAC
TGGGATTAACATGCAGGTGTTTGGGGACGCCGACTACGCAAGCAAGGCAA
CAGACCGCAGATCGGTGTCAGGAGGGCTAGTGATGTGTGGGGGAGGGTGT
GTGACTTGGTTTTCGAGCACACAGAAGTGCGTTACGTTTTCCACCACGGA
AGCAGAGTATGTGGGAGCGATTCAGATTGCGCACAACCCGATCGCGAACT
CCAACTCGAAGCACATCGATGTACGGCATCACATTATCAGGGAGCTGGTA
GAGAGGAAGGAGATCTCAGTTACTCATGTGCCGACGCAATTCAGCATGCA
GATTTCTTGA back to topprotein sequence of EsuBft641_10a-0001 >EsuBft641_10 ID=EsuBft641_10|Name=EsuBft641_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=469bp
MDKDSLISSLATREVVDQGRRDLPTPPQLDPSLGGRGSGGAAGGAGPVDS
GEGGRPQMFATMFAIREDVDAALRAPRLPDKMPDLPHCLASDLRXSRTPR
PTDPAAAGSESWRPWKRGGCGRCGARGFRGGGETADVRNDQPVENAINAK
WVFNCKADEYGWPTKFKARLVARGEMQRASIDFGELLAPTVSVSSVRLLA
AIACEQNLDFCHVDIQQAFLQSELDKDVSMRLPQRCDACVLRLLEEGHVI
MIIVVHLDDSFAVGQKERCDKFGRDLNAMVPVMNLGELRWYSACFHKRDV
ERGLLRISQQRISTVVGHSNKAGHRERSTSSSYASPKMVHWKAALGILGY
VRRTGWMRITFERGVLTGINMQVFGDADYASKATDRRSVSGGLVMCGGGC
VTWFSSTQKCVTFSTTEAEYVGAIQIAHNPIANSNSKHIDVRHHIIRELV
ERKEISVTHVPTQFSMQIS back to topmRNA from alignment at Scaffold_389:358147..360318- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft641_10a-0001 ID=EsuBft641_10a-0001|Name=EsuBft641_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2172bp|location=Sequence derived from alignment at Scaffold_389:358147..360318- (Ectocarpus subulatus male Bft15b)
ATGGACAAGGACTCCCTCATCTCGTCGCTCGCCACCCGGGAGGTCGTGGA
TCAAGGACGCCGCGACCTACCGACCCCGCCGCAGCTGGATCCGAGTCTTG
GAGGCCGTGGAAGCGGGGGGGCTGCGGGAGGTGCGGGGCCCGTGGATTCC
GGGGAGGGGGGGAGACCGCAGATGTTCGCAACGATGTTCGCCATCCGCGA
GGATGTGGACGCCGCTCTTCGCGCCCCGCGCCTGCCCGACAAGATGCCAG
ACCTTCCTCACTGCCTCGCCAGCGACCTCCGAGNATCAAGGACGCCGCGA
CCTACCGACCCCGCCGCAGCTGGATCCGAGTCTTGGAGGCCGTGGAAGCG
GGGGGGCTGCGGGAGGTGCGGGGCCCGTGGATTCCGGGGAGGGGGGGAGA
CCGCAGATGTTCGCAACGATGTTCGCCATCCGCGAGGATGTGGACGCCGC
TCTTCGCGCCCCGCGCCTGCCCGACAAGATGCCAGACCTTCCTCACTGCC
TCGCCAGCGACCTCCGAGTGCCGAAAACGCTGAAGGAAGCCATGCGGTGT
CAACATTCGAAGTTGTGGGATTCGATCGATTTTTTGTCGGTTTGTTGGAT
GCAGGAACTTTTAGTCCGGTGTAGCAACCAGTAGAGAACGCGATCAATGC
CAAGTGGGTCTTTAACTGTAAGGCAGACGAGTACGGATGGCCGACGAAAT
TCAAGGCAAGACTTGTAGCGCGGGGGGAAATGCAGAGGGCTTCGATTGAT
TTTGGAGAATTGCTTGCACCCACCGTTTCCGTGTCTAGTGTGCGCTTGTT
GGCAGCAATAGCATGTGAGCAGAATCTTGACTTTTGCCATGTCGATATTC
AGCAGGCTTTTTTGCAGTCTGAGCTTGATAAGGATGTTTCCATGCGCTTA
CCGCAGAGGTGTGGTAGGTTATCTGGTCTGATCGTGATGCCGTGCAATAG
TCTGCATGGTTTGAAGCAGGCATCACGACATTGGCATGCGCACCTGACGA
GGTGTTTGTTACATTGAGATTTTTTGCAGTGTCTGGCAGATGCATGTGTT
CTTCGATTATTGGAGGAGGGACATGTGATCATGATCATCGTGGTCCACTT
GGATGACAGTTTTGCCGTAGGGCAGAAGGAGAGGTGTGACAAGTTTGGCA
GGGATCTCAACGCGATGGTCCCCGTGATGAATCTTGGAGAGTTGAGGTGG
TACTCCGCGTGCTTTCACAAGAGAGACGTAGAGAGAGGACTGTTGAGGAT
TTCGCAGCAGAGGTTTGCCGAAGAGCTGGCTGCAGAGTACGGCATTGAGT
GGGGGAGGAGCGTGCCCTTACCTGTGGCTCACCGACTTTGACGAGAACGA
AGCGTGCGCTGATGTCCCTCTTCGCGAGTTNTGAATCTTGGAGAGTTGAG
GTGGTACTCCGCGTGCTTTCACAAGAGAGACGTAGAGAGAGGACTGTTGA
GGATTTCGCAGCAGAGGTTTGCCGAAGAGCTGGCTGCAGAGTACGGCATT
GAGTGGGGGAGGAGCGTGCCCTTACCTGTGGCTCACCGACTTTGACGAGA
ACGAAGCGTGCGCTGATGTCCCTCTTCGCGAGTTGGTAGGATCTCTACTG
TGGTTGGCCACTCAAACAAGGCCGGACATCGTGAACGCAGTACGAGCAGT
AGCTATGCATCTCCCAAGATGGTGCACTGGAAGGCAGCACTCGGTATTTT
AGGGTACGTACGGAGGACGGGTTGGATGAGGATTACATTTGAGAGGGGAG
TCTTGACTGGGATTAACATGCAGGTGTTTGGGGACGCCGACTACGCAAGC
AAGGCAACAGACCGCAGATCGGTGTCAGGAGGGCTAGTGATGTGTGGGGG
AGGGTGTGTGACTTGGTTTTCGAGCACACAGAAGTGCGTTACGTTTTCCA
CCACGGAAGCAGAGTATGTGGTAATTGCCGATGTCTTGAAGGAGGTGTTG
TTCCGGAGGGAGGTGTGACGTTTTATGTTGCCAGATGCAGGTATGCCGTG
CATCCCGGTGTTCGAGGATAATCAGGGAGCGATTCAGATTGCGCACAACC
CGATCGCGAACTCCAACTCGAAGCACATCGATGTACGGCATCACATTATC
AGGGAGCTGGTAGAGAGGAAGGAGATCTCAGTTACTCATGTGCCGACGCA
ATTCAGCATGCAGATTTCTTGA back to topCoding sequence (CDS) from alignment at Scaffold_389:358147..360318- >EsuBft641_10a-0001 ID=EsuBft641_10a-0001|Name=EsuBft641_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1410bp|location=Sequence derived from alignment at Scaffold_389:358147..360318- (Ectocarpus subulatus male Bft15b)
ATGGACAAGGACTCCCTCATCTCGTCGCTCGCCACCCGGGAGGTCGTGGA
TCAAGGACGCCGCGACCTACCGACCCCGCCGCAGCTGGATCCGAGTCTTG
GAGGCCGTGGAAGCGGGGGGGCTGCGGGAGGTGCGGGGCCCGTGGATTCC
GGGGAGGGGGGGAGACCGCAGATGTTCGCAACGATGTTCGCCATCCGCGA
GGATGTGGACGCCGCTCTTCGCGCCCCGCGCCTGCCCGACAAGATGCCAG
ACCTTCCTCACTGCCTCGCCAGCGACCTCCGAGNATCAAGGACGCCGCGA
CCTACCGACCCCGCCGCAGCTGGATCCGAGTCTTGGAGGCCGTGGAAGCG
GGGGGGCTGCGGGAGGTGCGGGGCCCGTGGATTCCGGGGAGGGGGGGAGA
CCGCAGATGTTCGCAACGATCAACCAGTAGAGAACGCGATCAATGCCAAG
TGGGTCTTTAACTGTAAGGCAGACGAGTACGGATGGCCGACGAAATTCAA
GGCAAGACTTGTAGCGCGGGGGGAAATGCAGAGGGCTTCGATTGATTTTG
GAGAATTGCTTGCACCCACCGTTTCCGTGTCTAGTGTGCGCTTGTTGGCA
GCAATAGCATGTGAGCAGAATCTTGACTTTTGCCATGTCGATATTCAGCA
GGCTTTTTTGCAGTCTGAGCTTGATAAGGATGTTTCCATGCGCTTACCGC
AGAGGTGTGATGCATGTGTTCTTCGATTATTGGAGGAGGGACATGTGATC
ATGATCATCGTGGTCCACTTGGATGACAGTTTTGCCGTAGGGCAGAAGGA
GAGGTGTGACAAGTTTGGCAGGGATCTCAACGCGATGGTCCCCGTGATGA
ATCTTGGAGAGTTGAGGTGGTACTCCGCGTGCTTTCACAAGAGAGACGTA
GAGAGAGGACTGTTGAGGATTTCGCAGCAGAGGATCTCTACTGTGGTTGG
CCACTCAAACAAGGCCGGACATCGTGAACGCAGTACGAGCAGTAGCTATG
CATCTCCCAAGATGGTGCACTGGAAGGCAGCACTCGGTATTTTAGGGTAC
GTACGGAGGACGGGTTGGATGAGGATTACATTTGAGAGGGGAGTCTTGAC
TGGGATTAACATGCAGGTGTTTGGGGACGCCGACTACGCAAGCAAGGCAA
CAGACCGCAGATCGGTGTCAGGAGGGCTAGTGATGTGTGGGGGAGGGTGT
GTGACTTGGTTTTCGAGCACACAGAAGTGCGTTACGTTTTCCACCACGGA
AGCAGAGTATGTGGGAGCGATTCAGATTGCGCACAACCCGATCGCGAACT
CCAACTCGAAGCACATCGATGTACGGCATCACATTATCAGGGAGCTGGTA
GAGAGGAAGGAGATCTCAGTTACTCATGTGCCGACGCAATTCAGCATGCA
GATTTCTTGA back to top
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