EsuBft62_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft62_9a-0001
Unique NameEsuBft62_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_195contigScaffold_195:411075..413885 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft62_9
Protein domainsPS51257
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length60
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-05_001120.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft62_9aEsuBft62_9aEctocarpus subulatus male Bft15bgeneScaffold_195 411075..413885 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft62_9a-0001-exonagat-exon-18698Ectocarpus subulatus male Bft15bexonScaffold_195 411075..411206 +
EsuBft62_9a-0001-exonEsuBft62_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_195 412569..412693 +
EsuBft62_9a-0001-exonagat-exon-18696Ectocarpus subulatus male Bft15bexonScaffold_195 413172..413314 +
EsuBft62_9a-0001-exonagat-exon-18697Ectocarpus subulatus male Bft15bexonScaffold_195 413683..413885 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft62_9a-0001-cdsEsuBft62_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_195 411075..411206 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft62_9a-0001EsuBft62_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_195 411075..413885 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft62_9a-0001 ID=EsuBft62_9a-0001|Name=EsuBft62_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=603bp|location=Sequence derived from alignment at Scaffold_195:411075..413885+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGGAGCTGACCCGCCTGCTGGGGAAGACGCCCTTCTTCCATGGGGA
CATGATGGTAGGGGCAGGCGCCGGGCTGGGAGGGGTTACGGGCGCGAGCT
GCGGGAGGACTCTCTTGGACTTTGCCATCGAGGTGATCTGCGACTCGCTC
GACCACGTGGCGGAGGACCGATTTCCGATCGCGCTCGAGTTTTTCGAAGC
CCTTGTGAGAATATCAGAGGGGAGACTCGGCCCTCTTGCCCTTCAGCGAA
CCTTCAGGGGACTGTCGTTTCTGTGCGCGTACACATGCTCCTCGCGGCGG
TGGGTGCAGGCAAGCGGCGGAACCAAGGGGCCGCTAGAGGACGACAACCG
TGCATTTTCGGCTCTCAAATACCTGCTCAGGCTTGTTTGCGGACAGGCGA
GTGGAGATTGCCGAGGAGGCCAGGGAGGCGTTCCGGCGATCCAGAGTGAC
GGAGACGGGGCCTCACGGTCCCCTGTTGGCCACGACTCCAGGGATAATGG
CCATCCCGACGTGGGACACGTACACGCCTATGGTCGTCAAGGGGGGAGGG
AGGGAGGCATCCCCGTGGGCGCGGACCCCGGACATGGACCGCGCTGGCGG
TGA
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protein sequence of EsuBft62_9a-0001

>EsuBft62_9 ID=EsuBft62_9|Name=EsuBft62_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=200bp
MRELTRLLGKTPFFHGDMMVGAGAGLGGVTGASCGRTLLDFAIEVICDSL
DHVAEDRFPIALEFFEALVRISEGRLGPLALQRTFRGLSFLCAYTCSSRR
WVQASGGTKGPLEDDNRAFSALKYLLRLVCGQASGDCRGGQGGVPAIQSD
GDGASRSPVGHDSRDNGHPDVGHVHAYGRQGGREGGIPVGADPGHGPRWR
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mRNA from alignment at Scaffold_195:411075..413885+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft62_9a-0001 ID=EsuBft62_9a-0001|Name=EsuBft62_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2811bp|location=Sequence derived from alignment at Scaffold_195:411075..413885+ (Ectocarpus subulatus male Bft15b)
ATGCGGGAGCTGACCCGCCTGCTGGGGAAGACGCCCTTCTTCCATGGGGA
CATGATGGTAGGGGCAGGCGCCGGGCTGGGAGGGGTTACGGGCGCGAGCT
GCGGGAGGACTCTCTTGGACTTTGCCATCGAGGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTCCTGACACTGCCGCTGCCTGTCAGCTGACATGTTTTTT
GTTTTTTTTTGCGGGGGTGGCCGGTGCGAGCTGTGCGCAGGCGCTCTTGG
ACCTCGCCGTGGAGTGGTTGTGCGCCCGCTGTGCTTCTGATACTTCTGCT
CCCTTTTTGCCATTTGTCGAAAGGGAAGCCCAATCCTCTTCGACAGACGT
TGGGAGATTGCTCTATTAGTACCCTTTATGAGGGTGATCTCGACAAGTTT
TTGTTTTCTCTTTTCCGTGTTTTTCTGTGATTGTTGTTTTTGCGCGGTAA
CCAACGCTGTTGGACTCCGCCATCGAGGCGTGTGTGTGTTCTGTGACACT
GCTGCTGCCTTCTTGCCATTTTTTGCGAAAGAGGGAACCAATCGTCCTCG
ACAGACGTTGGGAGATTACCGTGTATGACACAAGATAACACTCCCCCTGG
ACCGATTTTCAAACCTCGATTACTCCACGACGAACAGGATGCATGAACGA
AACGATACATTTTCGAAATGCTCTCGACGAGACGTTTTCAACGCCGCCGT
TTTCGGTGTTGTAACTGTTCCTGCAGTTGAGAAATCGAGCTTCGAGAATC
GGTCAAGGCGGTGTCTTATCTTGTGTCATACACGGTATTATACTACCCTT
TATGAAGGTGTTCTCCACAATTTGCTGTGTCCGTTGTACCTTGTTTCTTT
TTTTTTTGTAACTGCTTTTTTGCACATACCGACTGTTGGGTGTTAACATC
GAGGTGAGTGCTGTGCCGCCTTTTATTGTTTTTTCTCCGCGTGTTTCTGT
TTTTCGGTTATGAAGAGGGCGCGTGTTTAGTTTGTATTTTTCATTTTGTT
GTTTTTCGGGGAGGGCATGTTTTGTAGGAACATTCGTCTATCGCACGCGA
ATGCGATAATTCGTGCTGTCCAGCCTTTACTATAATTCTTGTTGTCATCA
TACTTCCCCTCGGCTTCGGTCTTTTCGCCTGTGCGTATGAAGGCTTTGTA
TGATTGCCAACCAGCTCTGGACTGGCCCTGCTGCCTGTTCACCTTCCATG
ACCCTTAGAATGCCACTGCTGTGCTGTCATGAGAGAGAACCCTCTCTGGA
GTGATGACTTGCATACATGCATGCATTATCTACGTAGGGAGATGAGCGAG
CCTCTCTGTTTAGACGCTTGTAGTAAATTATTCTTCTGTTCCAGCTCTAA
ATGGGAGGAAGAATAATCCTCTGCTTTCTTGACACTTGTAACCGTTATTG
CTCTATAAATTAAACATTGGAGGAGGAATAATCCTCTCTTCCTTGACACT
TGCAAACGTACGTAATACGTCGGGAAAAAAAATACATTGACCAGGTGATC
TGCGACTCGCTCGACCACGTGGCGGAGGACCGATTTCCGATCGCGCTCGA
GTTTTTCGAAGCCCTTGTGAGAATATCAGAGGGGAGACTCGGCCCTCTTG
CCCTTCAGCGAACCTTCAGGTGATTGGTCCTGCAGGGGGGGGGGGGGGGG
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNGGGGGGGGGGGGGGGCGGATCCAAACTGTGGGGGGGAGGAGTG
CATGCACTCTTGTAAACGTATGCCGTAGTCGTTGGACCATTGACCTCGCA
TCCCTACAAAGCCCAGACGGAGCGCGCCTGGGTTTCGCCGGACCAGGCTC
TCACATCACCAACAAGCGCGAAAAGAGCGGGTGTTGCTTGATTTTTTTTT
TTTTCGTCTTCTTTTCTTGGCTTGTTTGGCAGTCATTGACGGGTGAAGGT
TCTTGAGTTAATTTTTTGTGTTTAAAATCCTTCGGGAATGTTGCACACTT
ACTTAATCTTTCGTGATTTTTTTTTTTTTTTCTGCCTCGACTCGCAGGGG
ACTGTCGTTTCTGTGCGCGTACACATGCTCCTCGCGGCGGTGGGTGCAGG
CAAGCGGCGGAACCAAGGGGCCGCTAGAGGACGACAACCGTGCATTTTCG
GCTCTCAAATACCTGCTCAGGCTTGTTTGCGGACAGGCGAGTAGTGAATA
GAGGGGATGGCATGTCTGCACACATGCTCCAGAGACAGCTGCATGGCAGT
CAGCGGTGTGACAAGCCAGATGCAATGTAGCTGCACCCTTAACGTTTTCT
TCTGCTTCATCGGTCGAGGATGAACGTTGCTTTGAGGTTGGGTTATTTTT
GTTATTATACACCACATGCAGTTGCTTTTTTGTTTTTTCGCAGAAAATAT
GTTCAGAAGAGTGCCTACTTATTACGGGTGGTTATTTCTTCTGTAGGTGC
TCACTGAAACTTTTTTTTTGTCCACGAGAGTTGCTTATTTTCAATATTTT
TGTGTTTTCACCAACCACCGCACATGTTTTTTGTTTTACGTGGGATCCTT
ATTCTCAGGTGGAGATTGCCGAGGAGGCCAGGGAGGCGTTCCGGCGATCC
AGAGTGACGGAGACGGGGCCTCACGGTCCCCTGTTGGCCACGACTCCAGG
GATAATGGCCATCCCGACGTGGGACACGTACACGCCTATGGTCGTCAAGG
GGGGAGGGAGGGAGGCATCCCCGTGGGCGCGGACCCCGGACATGGACCGC
GCTGGCGGTGA
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Coding sequence (CDS) from alignment at Scaffold_195:411075..413885+

>EsuBft62_9a-0001 ID=EsuBft62_9a-0001|Name=EsuBft62_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=603bp|location=Sequence derived from alignment at Scaffold_195:411075..413885+ (Ectocarpus subulatus male Bft15b)
ATGCGGGAGCTGACCCGCCTGCTGGGGAAGACGCCCTTCTTCCATGGGGA
CATGATGGTAGGGGCAGGCGCCGGGCTGGGAGGGGTTACGGGCGCGAGCT
GCGGGAGGACTCTCTTGGACTTTGCCATCGAGGTGATCTGCGACTCGCTC
GACCACGTGGCGGAGGACCGATTTCCGATCGCGCTCGAGTTTTTCGAAGC
CCTTGTGAGAATATCAGAGGGGAGACTCGGCCCTCTTGCCCTTCAGCGAA
CCTTCAGGGGACTGTCGTTTCTGTGCGCGTACACATGCTCCTCGCGGCGG
TGGGTGCAGGCAAGCGGCGGAACCAAGGGGCCGCTAGAGGACGACAACCG
TGCATTTTCGGCTCTCAAATACCTGCTCAGGCTTGTTTGCGGACAGGCGA
GTGGAGATTGCCGAGGAGGCCAGGGAGGCGTTCCGGCGATCCAGAGTGAC
GGAGACGGGGCCTCACGGTCCCCTGTTGGCCACGACTCCAGGGATAATGG
CCATCCCGACGTGGGACACGTACACGCCTATGGTCGTCAAGGGGGGAGGG
AGGGAGGCATCCCCGTGGGCGCGGACCCCGGACATGGACCGCGCTGGCGG
TGA
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