EsuBft62_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft62_5a-0001
Unique Name	EsuBft62_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_195	contig	Scaffold_195:358773..360396 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft62_5
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SignalP-TM
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	SIGNAL_PEPTIDE
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	162
Hectar predicted targeting category	mitochondrion
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft62_5a	EsuBft62_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_195 358773..360396 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft62_5a-0001-exon	EsuBft62_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_195 358773..360396 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft62_5a-0001-cds	EsuBft62_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_195 358773..359027 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft62_5a-0001-exon	agat-three_prime_utr-19429	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_195 359028..360396 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft62_5a-0001	EsuBft62_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_195 358773..359027 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_195:358773..360396+
coding sequence from alignment at Scaffold_195:358773..360396+

spliced messenger RNA

>EsuBft62_5a-0001 ID=EsuBft62_5a-0001|Name=EsuBft62_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1624bp|location=Sequence derived from alignment at Scaffold_195:358773..360396+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGATGATGATCCCGTCGAGTGCGCTCCTGGCGAGCAGGGCGGGGTC
TAGGAGGGGCTCGTCGGCGAGCTTGAACGCCGCCGGCGGTGGCGGAAGTG
AAGGAAAAGGAAAGGCAGATGGGGTCGCTCCCGCCGCCGCCGTCGCCGTC
GCCGCCGCCACTGCTGATGGCCCTGCTGTTGCGGCTACCGCCTCATCGGC
TGCTGCTGCTGATGGTCCTGCTGCTGCTACTGCCACTGGTGAGAATGCTC
CTTAGCCGACACCCGATTCTACGGCCGAAGGCTAGATAGAGGGGGTTGGG
CTGGCTGGCTCCAAGGGATCCATACGGCGGCAGTTGATAGCGACGGAGCA
CCCGCAGCAGAAGTGATGCGCGGATAACACAGCGTATGACTACGAGTAGA
TTCACTTCCCAGACTAGCTAGTTCTTGTGCGTGTTTTTTTTTTTTTTGCT
GTAGAGGATGCGCGCGTACGGATGTTTTGGCCGACGGAGGGGGACCGGTG
GACGATAATTATGTCCTGATGTTCCCCCGCCCCGTCTGTACAACCTATAG
CAAATAGTTGCGGCTTATGTGAGCTGCTGCATCCCAGGTCGGCCGCGTTG
TTGTGCAGCATAGCGCAGCGCCCGTGCTCTCGGCAGCCGAACCCTCAGGG
GGGCGGCACTCTTCTCGCTAGCGGGGCGCGCGCTTTGAGGCCGTCGGTGT
AGGCACGGTCGTATGCATGCAAGAGTATGCGTAGGTTAGCGTCGATGTGA
TATGCCCAAGCAAGGCCAGGTTCATGAGTTCGTTTTTTGGTTCTTCAGAC
AAATACCACCACCTTTGGTGACGTAGGACGTCCTACCCCCTTGATCGATT
TTCTTTTCGTTAGTATACGCCAGAAGAGCGGGGGTTCCCCGAAACTATCG
GCGTTGGATTGCTCACTTGTCGTCGGGAGCTTTCCGAAGACGTAAAACTG
TCAACGCGCTCCTCTTGGTCATGTAAGTAGTCGAGCTTTGCAATTGGTCC
GGGGGGTGCGATGTCTTGCGTCACCTACCTGCGGTCGGGGCTGGGTTCAG
TTTCTCGGTATTCATGAGTGGCTTCTTGTTGCCACGTTTCGTCAGGAGGG
CAGTGGGCCTGGCCTAGGACAAGCAGTTTCGTTATGTTCTTGACGTCTTG
TGAGTAGTGGCGAGCACTGCAGGGTCGGGGTGCTTGTTGGAGACCTGGCA
ACACATATGGAGGAGATCTTCTCGCCTGGAAATGGTACCTACCATACCGG
GGGTGACTACCACGATAGAAAAGCCGATCTTCACCGAGGGAATGGTAACT
AGTGATTGATTGTAAAGGAATGGTTTGGAAAGAAATGCACCCATCCTGCA
TTGCATGCACTCTTCGGTCGCCTTGTGTTGTGGTACACAGTCTACCTCCT
CCCCAGGCGCCTTGATGATCCATGTACCCCCAGAGGTCTAGGTTAGGATG
ACAAACTCAAAACGCACTATCTGAAGGACACTTACACGTAGTACGCGTCG
AGAACGACTGGCATTTAGTAGTTTTCGACACCACAGGCCGGGGGTACGGC
AGAAGAGTCCCGGGCCAGACTCGAAGCCCCGCACGCCTTTTTGTCTCCTC
AGGAGGGATCGAAAGGCTGACTAA

protein sequence of EsuBft62_5a-0001

>EsuBft62_5 ID=EsuBft62_5|Name=EsuBft62_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=84bp
MTMMIPSSALLASRAGSRRGSSASLNAAGGGGSEGKGKADGVAPAAAVAV
AAATADGPAVAATASSAAAADGPAAATATGENAP

mRNA from alignment at Scaffold_195:358773..360396+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft62_5a-0001 ID=EsuBft62_5a-0001|Name=EsuBft62_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1624bp|location=Sequence derived from alignment at Scaffold_195:358773..360396+ (Ectocarpus subulatus male Bft15b)
ATGACGATGATGATCCCGTCGAGTGCGCTCCTGGCGAGCAGGGCGGGGTC
TAGGAGGGGCTCGTCGGCGAGCTTGAACGCCGCCGGCGGTGGCGGAAGTG
AAGGAAAAGGAAAGGCAGATGGGGTCGCTCCCGCCGCCGCCGTCGCCGTC
GCCGCCGCCACTGCTGATGGCCCTGCTGTTGCGGCTACCGCCTCATCGGC
TGCTGCTGCTGATGGTCCTGCTGCTGCTACTGCCACTGGTGAGAATGCTC
CTTAGCCGACACCCGATTCTACGGCCGAAGGCTAGATAGAGGGGGTTGGG
CTGGCTGGCTCCAAGGGATCCATACGGCGGCAGTTGATAGCGACGGAGCA
CCCGCAGCAGAAGTGATGCGCGGATAACACAGCGTATGACTACGAGTAGA
TTCACTTCCCAGACTAGCTAGTTCTTGTGCGTGTTTTTTTTTTTTTTGCT
GTAGAGGATGCGCGCGTACGGATGTTTTGGCCGACGGAGGGGGACCGGTG
GACGATAATTATGTCCTGATGTTCCCCCGCCCCGTCTGTACAACCTATAG
CAAATAGTTGCGGCTTATGTGAGCTGCTGCATCCCAGGTCGGCCGCGTTG
TTGTGCAGCATAGCGCAGCGCCCGTGCTCTCGGCAGCCGAACCCTCAGGG
GGGCGGCACTCTTCTCGCTAGCGGGGCGCGCGCTTTGAGGCCGTCGGTGT
AGGCACGGTCGTATGCATGCAAGAGTATGCGTAGGTTAGCGTCGATGTGA
TATGCCCAAGCAAGGCCAGGTTCATGAGTTCGTTTTTTGGTTCTTCAGAC
AAATACCACCACCTTTGGTGACGTAGGACGTCCTACCCCCTTGATCGATT
TTCTTTTCGTTAGTATACGCCAGAAGAGCGGGGGTTCCCCGAAACTATCG
GCGTTGGATTGCTCACTTGTCGTCGGGAGCTTTCCGAAGACGTAAAACTG
TCAACGCGCTCCTCTTGGTCATGTAAGTAGTCGAGCTTTGCAATTGGTCC
GGGGGGTGCGATGTCTTGCGTCACCTACCTGCGGTCGGGGCTGGGTTCAG
TTTCTCGGTATTCATGAGTGGCTTCTTGTTGCCACGTTTCGTCAGGAGGG
CAGTGGGCCTGGCCTAGGACAAGCAGTTTCGTTATGTTCTTGACGTCTTG
TGAGTAGTGGCGAGCACTGCAGGGTCGGGGTGCTTGTTGGAGACCTGGCA
ACACATATGGAGGAGATCTTCTCGCCTGGAAATGGTACCTACCATACCGG
GGGTGACTACCACGATAGAAAAGCCGATCTTCACCGAGGGAATGGTAACT
AGTGATTGATTGTAAAGGAATGGTTTGGAAAGAAATGCACCCATCCTGCA
TTGCATGCACTCTTCGGTCGCCTTGTGTTGTGGTACACAGTCTACCTCCT
CCCCAGGCGCCTTGATGATCCATGTACCCCCAGAGGTCTAGGTTAGGATG
ACAAACTCAAAACGCACTATCTGAAGGACACTTACACGTAGTACGCGTCG
AGAACGACTGGCATTTAGTAGTTTTCGACACCACAGGCCGGGGGTACGGC
AGAAGAGTCCCGGGCCAGACTCGAAGCCCCGCACGCCTTTTTGTCTCCTC
AGGAGGGATCGAAAGGCTGACTAA

Coding sequence (CDS) from alignment at Scaffold_195:358773..360396+

>EsuBft62_5a-0001 ID=EsuBft62_5a-0001|Name=EsuBft62_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=255bp|location=Sequence derived from alignment at Scaffold_195:358773..360396+ (Ectocarpus subulatus male Bft15b)
ATGACGATGATGATCCCGTCGAGTGCGCTCCTGGCGAGCAGGGCGGGGTC
TAGGAGGGGCTCGTCGGCGAGCTTGAACGCCGCCGGCGGTGGCGGAAGTG
AAGGAAAAGGAAAGGCAGATGGGGTCGCTCCCGCCGCCGCCGTCGCCGTC
GCCGCCGCCACTGCTGATGGCCCTGCTGTTGCGGCTACCGCCTCATCGGC
TGCTGCTGCTGATGGTCCTGCTGCTGCTACTGCCACTGGTGAGAATGCTC
CTTAG