EsuBft62_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft62_3a-0001
Unique NameEsuBft62_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_195contigScaffold_195:325255..327062 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FME5
ProteomeIdEsuBft62_3
Protein domainsIPR004859
Protein domainsIPR027073
Protein domainsPTHR12341
Ownerapollo_admin@sb-roscoff.fr
Note5 -3 exoribonuclease 1 os:mus musculus gn:xrn1 pe:1 sv:1 [Automatic annotation]
Nb exon1
Max annot lvl2759|Eukaryota
Length460
Hectar predicted targeting categoryno signal peptide or anchor
Evalue7.98e-32
EggNOG OGsCOG5049@1|root,KOG2045@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K12618
KEGG Pathwayko03008,ko03018,map03008,map03018
Description5'-3' exonuclease activity
COG categoryADL
BRITEko00000,ko00001,ko01000,ko03009,ko03016,ko03019,ko03036
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
GO0071028
GO0010587
GO0070651
GO0003682
GO0071044
EC3.1.13
GO0048471
GO0000175
GO0004534
GO0060965
GO0000932
GO0006364
GO0043928
GO0005829
GO0003729
GO0040034
GO0060261
GO0000184
GO0032968
GO0005874
GO0003333
GO0003677
GO0000741
GO0007569
GO0040028
GO0005515
GO0007126
GO0000723
GO0003779
GO0007089
GO0090503
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft62_3aEsuBft62_3aEctocarpus subulatus male Bft15bgeneScaffold_195 325255..327062 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft62_3a-0001-exonEsuBft62_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_195 325255..325316 +
EsuBft62_3a-0001-exonagat-exon-18667Ectocarpus subulatus male Bft15bexonScaffold_195 326665..327062 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft62_3a-0001-exonagat-five_prime_utr-12404Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_195 325255..325316 +
EsuBft62_3a-0001-exonagat-five_prime_utr-12405Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_195 326665..326882 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft62_3a-0001-cdsEsuBft62_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_195 326883..327062 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft62_3a-0001EsuBft62_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_195 326883..327062 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft62_3a-0001 ID=EsuBft62_3a-0001|Name=EsuBft62_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=460bp|location=Sequence derived from alignment at Scaffold_195:325255..327062+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AGACTCCTTGCCAACACTAGCTTGGCTGGGTGCTCTCTCCAGGTGCTAGG
GCTGACGGAGTGACTCGCGACAGGTCGGACGCGGCGAGGCTTGCAGCAGC
GGGCCCAGCAGCAGCCGCAGCAGTGCGACAAGAGGCAGCAGCAGCAGCAA
CAACGAGAACAGCAGCAGCAGTGAGACCTTCAGCAGCAGCAGCAGCAGCA
GCCGCGAACAACAACAAAAGCGGCAAGCAGGCTATACCACCACCACCGCT
CGAAGAGAGAAGGGAAAGAACGCCAGCGACATGGGAGTCCCAAAGTTTTA
CAGATGGATATCCGAGCGCTACCCGAAGATCAACCAGATCGTTTCGGACT
CTACCCTCCTTCCGGAGTTCGACAACCTTTACCTAGACATGAACGGGATC
CTGCACACGTGCACGCATCCCAATGATGACGGGCTCAGTGCTCAGGTGGG
TCTGGTTTGA
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protein sequence of EsuBft62_3a-0001

>EsuBft62_3 ID=EsuBft62_3|Name=EsuBft62_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=59bp
MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPNDD
GLSAQVGLV
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mRNA from alignment at Scaffold_195:325255..327062+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft62_3a-0001 ID=EsuBft62_3a-0001|Name=EsuBft62_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1808bp|location=Sequence derived from alignment at Scaffold_195:325255..327062+ (Ectocarpus subulatus male Bft15b)
AGACTCCTTGCCAACACTAGCTTGGCTGGGTGCTCTCTCCAGGTGCTAGG
GCTGACGGAGTGGTGAGTTTCCGCTGGATTGGTACCACTGCTTGAGCTTT
ACTCTTACCCTCAACTCTGTTGGTAGCTATTCTTCTGGCGGCATAAAATT
AAATTCTCTCGTCTGTTACTGACCGTTTGGGCAGAGGGGCGGCGGCCAAA
CGTACTTTGAGACCATGTGCACCAATCAGCCCGGTGCTGATGTTCCTCCT
GCTGTGCTTTCTAGTGTGCTTGCTGTTGCAGGCAGGCCAACATTGTTGCC
GTGTTACTTAACCCACGGGAGGAGAGTGGTCGGCACTGTTGGTGTATTTT
GCTCGGGGTCGCTTTGTGTTGTTGCGAAGCTTGTATCGGCCGCGGCCCAG
CAGCATACCGCAGGTGACATCACATTAGACACCACACCGCCTGGACCGAT
TCCAAAGTTCGATTACTCCACGATGAAGAGGATGCAAAAATCAAATGGTA
AAGGTTGTGAAACCCTCGATGAGGTGGTTCCAACGCCGCCATTCTCGGCA
CAGTCGCTTCTGTTGCTGCAGCGCAATCGAGTTTTGAAAATCGGTCGAGG
GAGTATGGTATCTTACGCCAAATCCGAGGCTGTGAGCGTACTCCGCTTGT
TCGCAATACATCAACGAGCAATCATGCTTGCTGCTGTAATCTCCTTGTTG
CGTCGTTCGAGCGTCAATAAAGCCCCGCAATGGATCGTAAATGTGCGTGC
TTGATCTACATTCTGAATTTGCACTATGTGTAGAATGAAATGTAGCGAAG
GCAAGGGTTGTACAACCCAACTGCCAACGTCGCTCGCGGTCTTCCTATTC
CACTACATAACCTTGTCTACTCTGGCAGAGAGGAGCTCCGACCCGAGATT
CACACCGATGAGCAGCAGTCCACGCAGCAAATTGATTAAGCAAACATATG
GGACAAAGTATTCAATCCGTGCTTTGGGGTTAGGGGGGTCAGGGATAGGG
TCTGCGTGCCCCCTCCCTTTTCTTTTTCTAGATACTCCTAAAATCCTGCC
CTGCGTAGGTGGTCCCCGATGAATCCCATTGCAATGCTGCCTTCCATATT
TTGTTCTTGTACAAGTAGCCCCCGCACGTAAGAACATGATTCTTTCAAAC
CAAAAGAACTTAAGCACCATTTTGTGAGCCCGGGTAAACACCAGTAGACT
GAACCTATGCCGCGGCCATTTGCTGCCCTCAAGAGGACTAAGAACGCCAA
CCTCGTCCACAAGTAGAGCTTATTAAGTGCGTGCGTTATCTGCAAGTGGA
TTGGACAAACGGAGTCGAGAGTGACACGTGTGTACAGCACTACCAGAGGC
GCCGAGACGGCCACCCTGCCTCACACACGTTGTATGCGTGCCGTGCTTCT
CTGTGAGCAGACTCGCGACAGGTCGGACGCGGCGAGGCTTGCAGCAGCGG
GCCCAGCAGCAGCCGCAGCAGTGCGACAAGAGGCAGCAGCAGCAGCAACA
ACGAGAACAGCAGCAGCAGTGAGACCTTCAGCAGCAGCAGCAGCAGCAGC
CGCGAACAACAACAAAAGCGGCAAGCAGGCTATACCACCACCACCGCTCG
AAGAGAGAAGGGAAAGAACGCCAGCGACATGGGAGTCCCAAAGTTTTACA
GATGGATATCCGAGCGCTACCCGAAGATCAACCAGATCGTTTCGGACTCT
ACCCTCCTTCCGGAGTTCGACAACCTTTACCTAGACATGAACGGGATCCT
GCACACGTGCACGCATCCCAATGATGACGGGCTCAGTGCTCAGGTGGGTC
TGGTTTGA
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Coding sequence (CDS) from alignment at Scaffold_195:325255..327062+

>EsuBft62_3a-0001 ID=EsuBft62_3a-0001|Name=EsuBft62_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=180bp|location=Sequence derived from alignment at Scaffold_195:325255..327062+ (Ectocarpus subulatus male Bft15b)
ATGGGAGTCCCAAAGTTTTACAGATGGATATCCGAGCGCTACCCGAAGAT
CAACCAGATCGTTTCGGACTCTACCCTCCTTCCGGAGTTCGACAACCTTT
ACCTAGACATGAACGGGATCCTGCACACGTGCACGCATCCCAATGATGAC
GGGCTCAGTGCTCAGGTGGGTCTGGTTTGA
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