EsuBft62_16a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft62_16a-0001
Unique NameEsuBft62_16a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_195contigScaffold_195:540189..542968 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft62_16
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length270
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft62_16aEsuBft62_16aEctocarpus subulatus male Bft15bgeneScaffold_195 540189..542968 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft62_16a-0001-exonEsuBft62_16a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_195 540189..541305 -
EsuBft62_16a-0001-exonagat-exon-18745Ectocarpus subulatus male Bft15bexonScaffold_195 541383..542968 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft62_16a-0001-cdsEsuBft62_16a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_195 540189..541305 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft62_16a-0001EsuBft62_16Ectocarpus subulatus male Bft15bpolypeptideScaffold_195 540189..542968 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft62_16a-0001 ID=EsuBft62_16a-0001|Name=EsuBft62_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2703bp|location=Sequence derived from alignment at Scaffold_195:540189..542968- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGCGTGTTGATGCCGACGGAAACACAGCTACATCACGTCTACACCG
CGGCGGCACATCCTTCCGTCCTCGTAATCGACCCTTGCCCGCCCCCCGGC
AGGAGATCGGCAAGCGCAGCGTGTACAAGATCGTCGTGCAGGAAAAAAAG
GTAGACGTCCTTGTGGAGGCTGTTGTCCAGTCGGTCGCCACCGCCGCCTC
CGCCGCGGGAGCTCCTCCGGCAGCAGCAGCAGCAGCAACAGCAGCAATCG
CTGCCGACTCGGCCAAGCCCTCGCGCGGGCGCTCACGGGATCGCCGTGGC
GAGAATGACCTAGAGCAGCACCAGCACCAGCACCAGCACCAGCACCAGCA
CCAGCAGCCGCCGCCTTCGGCGGCATCCACGATCCATTACCCGCCTATCT
CGCCGTCGACCATTGCCCCCGGGCAGGGGCCGGCGCCGTCCCCGACTCAG
AGCGCGCTCGGCGCCGTGAGGATGGCAGAGGAGCGGGGGGCGGCCCGTGA
AGCTTCCTCTGCTGCCACCGCCGCCGCCGCCGCCGCCGCCGCCATCGCCG
GTGCCAACGCCTCCGCCGAGGAGAAGAGAAGGGCGGCGGCGGCAGCGGCA
GCGGCGGCGGCGGCGGCGGCGGCCATGGTGGTGGAGGAGGAGCAGCGGCA
TCAGGTGATCGCCTCGGGCGTGAAACCTTCCGACTCACCGAAGCCGTACG
GGTCCAAGCGAGGGAGAGCGCGACGCGCCGCCGCGGCGGCCCGTGCGGCC
GCGAAGTCCGCGACCTCGGGGACGCTGCCGGCGTCCTCCTCTGAGGACGA
GGAGGACGACCAGCCCGCTGCAAGAAGGCCAACTCAATCGGCCGTGCAGC
CGTCCGCCGCTACCGCTGTTGCGAGCGACACGCATGTGAGGAAACCGTCC
GGGAAGATAACCGTTCCCGACGTCTTCAAGCAGTCCACAAAGCCCCCGCA
ACAGTCGGCCGCCGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGGGGGCA
ACGTCGCGACATCCTCGGCCCGCCGGGGGAGGTCGAAGGAATCCCGTGGG
TCGGGCCTGTCGTCTGCGGCTGCAACTGGCGGTGGCGACGGCGGCGGCGG
CGGGATGTCGGCCGCCGCCGCCCGAAGCATTGTTGAGCTCGTGTCCGGGG
CCGGGACCGCGAAGAAACCTTCGCATTCCGAGCGTACCGTCGCCGCCGCA
GGCGGCGGTGATGCGGTTGGTCCGAAGAACGCTGCGCCGGCGCCGGCCGT
AATTGACGATGAGCCCACCGCCGCGGCGACAAGGGGCCGAGGTCGCGAGG
AAGGTGGCGCCGGCGGGGCGGGGGATGCCGCCCCACGGGGCCGCACCGCG
ACCAGCAGCAGCGTCGAGCGGAGGACGGGGCCCCGCAAGCTGCGAATAGG
GAGGGGTACGCCTAGCATCTCCCCTGAGCGGCAGCGGCGGGCGCTGCTGG
GCCTCAGCGGGGACGAGCAGGAGAAGCAAGCCAACGGCGCTGCGACTACG
GGGAAGGAGGAGGAACAAGGCACGGCGGCGGNGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGCGCTGCCCAAGGAACGGCTCTCGTG
GAACTCCCAAGTCCAGGGTTGCCGTTGTCGGTGCTGGTGTTGCCGGCGGC
GGCGGTGGCGGCGGAGCCGGCGTCGCCGCGGCTCAGAGATCCTGGGGGAG
GTCGGGGTCGTGGTACGAGCCCCGGCGGCGTCAGCAGCCGGCGGCGGCGG
CGGCGGCGGTGGCGGCGCTGGCCGGACAAAAGGAGGAGGATGACGACGAC
GACGACGACGACGATGACGATGAGGACGATGAAGCGGCGATCGGCGGCGT
TGCCAGTGGTGGTGATGGTCGCTGTAGCGGCGAAGTTTTCCCTCCGCCGC
CGCCGCCGCAGCAGCAGCAGCAGCAGCAGCGGGCGTTCCTGCCGGTGGCC
GAGTCGGTGGCGGTGGAGGGCCCGGGGGGGTCGGGCCACCGCCGCCGCGG
CAGCCGAGAGGTTAAGGACAGCAGCGGAAACAGCGACAAAAACGCCTCGA
ATGGGCTGCCGGAAGAGAACATGTTCTTCATGAGGAAGCAGAAAACCAAG
TGGCGGGGCGGCGGCGGCGGCCTGCCCAAGGACAACGCCGCAGCGGCGGC
GTCGGAAGCGGCCGGAGGTCGCTTACGGGAGAAGCACCAGAGGTCGTCGA
GCAGGACGAGGCTCCACGACCGCATCACAGAGCAGCAGGAGCCGCCGGGT
GTCGGCGCCGCGGAAGCGGCCCGGCTACGGGAGGCGAGCGAGGAGAGGAA
GAGCTACGGGGGAAGCATCGCCGCGGCCGCGAAGGCGGTCGCGAACCCGG
GCTACGCGGACTCGGCGTGCGGGAGCGTTGTCATCCTCGACCGCGAGTCT
GGCATGGGGCTGTCCGTCCTCAACCCGTACGACGAAGTTGTCGTCGACAG
GACCGGCAGCGGCAGCGGGGGCGGCAACAAGGTGGCCATTTTCGCGGCCG
CGCCGTCCGCGGCGTCGTCGGGGAGAGGGGACGGCCGTCCCTCCGCTGTC
GTCGCCGCTACCGGCGCTACCGGCCGCTCGGGGTCCCGAGAGCGGAGTAA
CTCTTCGGGGTTGCGGCAGCTGGAGCAGAGACGGCCCTCCAGCCCGGCCG
GGCACATCCACACCGCGGAGCAGAAAGCGCGGCGGAGGCAGGAGGGGGGN
NNN
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protein sequence of EsuBft62_16a-0001

>EsuBft62_16 ID=EsuBft62_16|Name=EsuBft62_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=901bp
MRRVDADGNTATSRLHRGGTSFRPRNRPLPAPRQEIGKRSVYKIVVQEKK
VDVLVEAVVQSVATAASAAGAPPAAAAAATAAIAADSAKPSRGRSRDRRG
ENDLEQHQHQHQHQHQHQQPPPSAASTIHYPPISPSTIAPGQGPAPSPTQ
SALGAVRMAEERGAAREASSAATAAAAAAAAIAGANASAEEKRRAAAAAA
AAAAAAAAMVVEEEQRHQVIASGVKPSDSPKPYGSKRGRARRAAAAARAA
AKSATSGTLPASSSEDEEDDQPAARRPTQSAVQPSAATAVASDTHVRKPS
GKITVPDVFKQSTKPPQQSAAAAAAAAAAAAGGNVATSSARRGRSKESRG
SGLSSAAATGGGDGGGGGMSAAAARSIVELVSGAGTAKKPSHSERTVAAA
GGGDAVGPKNAAPAPAVIDDEPTAAATRGRGREEGGAGGAGDAAPRGRTA
TSSSVERRTGPRKLRIGRGTPSISPERQRRALLGLSGDEQEKQANGAATT
GKEEEQGTAAXEEEEEEEEEEEEEERCPRNGSRGTPKSRVAVVGAGVAGG
GGGGGAGVAAAQRSWGRSGSWYEPRRRQQPAAAAAAVAALAGQKEEDDDD
DDDDDDDEDDEAAIGGVASGGDGRCSGEVFPPPPPPQQQQQQQRAFLPVA
ESVAVEGPGGSGHRRRGSREVKDSSGNSDKNASNGLPEENMFFMRKQKTK
WRGGGGGLPKDNAAAAASEAAGGRLREKHQRSSSRTRLHDRITEQQEPPG
VGAAEAARLREASEERKSYGGSIAAAAKAVANPGYADSACGSVVILDRES
GMGLSVLNPYDEVVVDRTGSGSGGGNKVAIFAAAPSAASSGRGDGRPSAV
VAATGATGRSGSRERSNSSGLRQLEQRRPSSPAGHIHTAEQKARRRQEGG
X
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mRNA from alignment at Scaffold_195:540189..542968-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft62_16a-0001 ID=EsuBft62_16a-0001|Name=EsuBft62_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2780bp|location=Sequence derived from alignment at Scaffold_195:540189..542968- (Ectocarpus subulatus male Bft15b)
ATGAGGCGTGTTGATGCCGACGGAAACACAGCTACATCACGTCTACACCG CGGCGGCACATCCTTCCGTCCTCGTAATCGACCCTTGCCCGCCCCCCGGC AGGAGATCGGCAAGCGCAGCGTGTACAAGATCGTCGTGCAGGAAAAAAAG GTAGACGTCCTTGTGGAGGCTGTTGTCCAGTCGGTCGCCACCGCCGCCTC CGCCGCGGGAGCTCCTCCGGCAGCAGCAGCAGCAGCAACAGCAGCAATCG CTGCCGACTCGGCCAAGCCCTCGCGCGGGCGCTCACGGGATCGCCGTGGC GAGAATGACCTAGAGCAGCACCAGCACCAGCACCAGCACCAGCACCAGCA CCAGCAGCCGCCGCCTTCGGCGGCATCCACGATCCATTACCCGCCTATCT CGCCGTCGACCATTGCCCCCGGGCAGGGGCCGGCGCCGTCCCCGACTCAG AGCGCGCTCGGCGCCGTGAGGATGGCAGAGGAGCGGGGGGCGGCCCGTGA AGCTTCCTCTGCTGCCACCGCCGCCGCCGCCGCCGCCGCCGCCATCGCCG GTGCCAACGCCTCCGCCGAGGAGAAGAGAAGGGCGGCGGCGGCAGCGGCA GCGGCGGCGGCGGCGGCGGCGGCCATGGTGGTGGAGGAGGAGCAGCGGCA TCAGGTGATCGCCTCGGGCGTGAAACCTTCCGACTCACCGAAGCCGTACG GGTCCAAGCGAGGGAGAGCGCGACGCGCCGCCGCGGCGGCCCGTGCGGCC GCGAAGTCCGCGACCTCGGGGACGCTGCCGGCGTCCTCCTCTGAGGACGA GGAGGACGACCAGCCCGCTGCAAGAAGGCCAACTCAATCGGCCGTGCAGC CGTCCGCCGCTACCGCTGTTGCGAGCGACACGCATGTGAGGAAACCGTCC GGGAAGATAACCGTTCCCGACGTCTTCAAGCAGTCCACAAAGCCCCCGCA ACAGTCGGCCGCCGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGGGGGCA ACGTCGCGACATCCTCGGCCCGCCGGGGGAGGTCGAAGGAATCCCGTGGG TCGGGCCTGTCGTCTGCGGCTGCAACTGGCGGTGGCGACGGCGGCGGCGG CGGGATGTCGGCCGCCGCCGCCCGAAGCATTGTTGAGCTCGTGTCCGGGG CCGGGACCGCGAAGAAACCTTCGCATTCCGAGCGTACCGTCGCCGCCGCA GGCGGCGGTGATGCGGTTGGTCCGAAGAACGCTGCGCCGGCGCCGGCCGT AATTGACGATGAGCCCACCGCCGCGGCGACAAGGGGCCGAGGTCGCGAGG AAGGTGGCGCCGGCGGGGCGGGGGATGCCGCCCCACGGGGCCGCACCGCG ACCAGCAGCAGCGTCGAGCGGAGGACGGGGCCCCGCAAGCTGCGAATAGG GAGGGGTACGCCTAGCATCTCCCCTGAGCGGCAGCGGCGGGCGCTGCTGG GCCTCAGCGGGGACGAGCAGGAGAAGCAAGCCAACGGCGCTGCGACTACG GGGAAGGAGGAGGAACAAGGCACGGCGGCGGNGGAGGAGGAGGAGGAGGA GGAGGAGGAGGAGGAGGAGGAGGAGCGCTGCCCAAGGTTCGGCCCGGCAG CGTCCCGACCGTCCGCAAGAGTGGCGACCGATCTGTTCGAAAGAGCCTGC CGCATGCGGGCAGGAACGGCTCTCGTGGAACTCCCAAGTCCAGGGTTGCC GTTGTCGGTGCTGGTGTTGCCGGCGGCGGCGGTGGCGGCGGAGCCGGCGT CGCCGCGGCTCAGAGATCCTGGGGGAGGTCGGGGTCGTGGTACGAGCCCC GGCGGCGTCAGCAGCCGGCGGCGGCGGCGGCGGCGGTGGCGGCGCTGGCC GGACAAAAGGAGGAGGATGACGACGACGACGACGACGACGATGACGATGA GGACGATGAAGCGGCGATCGGCGGCGTTGCCAGTGGTGGTGATGGTCGCT GTAGCGGCGAAGTTTTCCCTCCGCCGCCGCCGCCGCAGCAGCAGCAGCAG CAGCAGCGGGCGTTCCTGCCGGTGGCCGAGTCGGTGGCGGTGGAGGGCCC GGGGGGGTCGGGCCACCGCCGCCGCGGCAGCCGAGAGGTTAAGGACAGCA GCGGAAACAGCGACAAAAACGCCTCGAATGGGCTGCCGGAAGAGAACATG TTCTTCATGAGGAAGCAGAAAACCAAGTGGCGGGGCGGCGGCGGCGGCCT GCCCAAGGACAACGCCGCAGCGGCGGCGTCGGAAGCGGCCGGAGGTCGCT TACGGGAGAAGCACCAGAGGTCGTCGAGCAGGACGAGGCTCCACGACCGC ATCACAGAGCAGCAGGAGCCGCCGGGTGTCGGCGCCGCGGAAGCGGCCCG GCTACGGGAGGCGAGCGAGGAGAGGAAGAGCTACGGGGGAAGCATCGCCG CGGCCGCGAAGGCGGTCGCGAACCCGGGCTACGCGGACTCGGCGTGCGGG AGCGTTGTCATCCTCGACCGCGAGTCTGGCATGGGGCTGTCCGTCCTCAA CCCGTACGACGAAGTTGTCGTCGACAGGACCGGCAGCGGCAGCGGGGGCG GCAACAAGGTGGCCATTTTCGCGGCCGCGCCGTCCGCGGCGTCGTCGGGG AGAGGGGACGGCCGTCCCTCCGCTGTCGTCGCCGCTACCGGCGCTACCGG CCGCTCGGGGTCCCGAGAGCGGAGTAACTCTTCGGGGTTGCGGCAGCTGG AGCAGAGACGGCCCTCCAGCCCGGCCGGGCACATCCACACCGCGGAGCAG AAAGCGCGGCGGAGGCAGGAGGGGGGNNNN
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Coding sequence (CDS) from alignment at Scaffold_195:540189..542968-

>EsuBft62_16a-0001 ID=EsuBft62_16a-0001|Name=EsuBft62_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2703bp|location=Sequence derived from alignment at Scaffold_195:540189..542968- (Ectocarpus subulatus male Bft15b)
ATGAGGCGTGTTGATGCCGACGGAAACACAGCTACATCACGTCTACACCG
CGGCGGCACATCCTTCCGTCCTCGTAATCGACCCTTGCCCGCCCCCCGGC
AGGAGATCGGCAAGCGCAGCGTGTACAAGATCGTCGTGCAGGAAAAAAAG
GTAGACGTCCTTGTGGAGGCTGTTGTCCAGTCGGTCGCCACCGCCGCCTC
CGCCGCGGGAGCTCCTCCGGCAGCAGCAGCAGCAGCAACAGCAGCAATCG
CTGCCGACTCGGCCAAGCCCTCGCGCGGGCGCTCACGGGATCGCCGTGGC
GAGAATGACCTAGAGCAGCACCAGCACCAGCACCAGCACCAGCACCAGCA
CCAGCAGCCGCCGCCTTCGGCGGCATCCACGATCCATTACCCGCCTATCT
CGCCGTCGACCATTGCCCCCGGGCAGGGGCCGGCGCCGTCCCCGACTCAG
AGCGCGCTCGGCGCCGTGAGGATGGCAGAGGAGCGGGGGGCGGCCCGTGA
AGCTTCCTCTGCTGCCACCGCCGCCGCCGCCGCCGCCGCCGCCATCGCCG
GTGCCAACGCCTCCGCCGAGGAGAAGAGAAGGGCGGCGGCGGCAGCGGCA
GCGGCGGCGGCGGCGGCGGCGGCCATGGTGGTGGAGGAGGAGCAGCGGCA
TCAGGTGATCGCCTCGGGCGTGAAACCTTCCGACTCACCGAAGCCGTACG
GGTCCAAGCGAGGGAGAGCGCGACGCGCCGCCGCGGCGGCCCGTGCGGCC
GCGAAGTCCGCGACCTCGGGGACGCTGCCGGCGTCCTCCTCTGAGGACGA
GGAGGACGACCAGCCCGCTGCAAGAAGGCCAACTCAATCGGCCGTGCAGC
CGTCCGCCGCTACCGCTGTTGCGAGCGACACGCATGTGAGGAAACCGTCC
GGGAAGATAACCGTTCCCGACGTCTTCAAGCAGTCCACAAAGCCCCCGCA
ACAGTCGGCCGCCGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGGGGGCA
ACGTCGCGACATCCTCGGCCCGCCGGGGGAGGTCGAAGGAATCCCGTGGG
TCGGGCCTGTCGTCTGCGGCTGCAACTGGCGGTGGCGACGGCGGCGGCGG
CGGGATGTCGGCCGCCGCCGCCCGAAGCATTGTTGAGCTCGTGTCCGGGG
CCGGGACCGCGAAGAAACCTTCGCATTCCGAGCGTACCGTCGCCGCCGCA
GGCGGCGGTGATGCGGTTGGTCCGAAGAACGCTGCGCCGGCGCCGGCCGT
AATTGACGATGAGCCCACCGCCGCGGCGACAAGGGGCCGAGGTCGCGAGG
AAGGTGGCGCCGGCGGGGCGGGGGATGCCGCCCCACGGGGCCGCACCGCG
ACCAGCAGCAGCGTCGAGCGGAGGACGGGGCCCCGCAAGCTGCGAATAGG
GAGGGGTACGCCTAGCATCTCCCCTGAGCGGCAGCGGCGGGCGCTGCTGG
GCCTCAGCGGGGACGAGCAGGAGAAGCAAGCCAACGGCGCTGCGACTACG
GGGAAGGAGGAGGAACAAGGCACGGCGGCGGNGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGCGCTGCCCAAGGAACGGCTCTCGTG
GAACTCCCAAGTCCAGGGTTGCCGTTGTCGGTGCTGGTGTTGCCGGCGGC
GGCGGTGGCGGCGGAGCCGGCGTCGCCGCGGCTCAGAGATCCTGGGGGAG
GTCGGGGTCGTGGTACGAGCCCCGGCGGCGTCAGCAGCCGGCGGCGGCGG
CGGCGGCGGTGGCGGCGCTGGCCGGACAAAAGGAGGAGGATGACGACGAC
GACGACGACGACGATGACGATGAGGACGATGAAGCGGCGATCGGCGGCGT
TGCCAGTGGTGGTGATGGTCGCTGTAGCGGCGAAGTTTTCCCTCCGCCGC
CGCCGCCGCAGCAGCAGCAGCAGCAGCAGCGGGCGTTCCTGCCGGTGGCC
GAGTCGGTGGCGGTGGAGGGCCCGGGGGGGTCGGGCCACCGCCGCCGCGG
CAGCCGAGAGGTTAAGGACAGCAGCGGAAACAGCGACAAAAACGCCTCGA
ATGGGCTGCCGGAAGAGAACATGTTCTTCATGAGGAAGCAGAAAACCAAG
TGGCGGGGCGGCGGCGGCGGCCTGCCCAAGGACAACGCCGCAGCGGCGGC
GTCGGAAGCGGCCGGAGGTCGCTTACGGGAGAAGCACCAGAGGTCGTCGA
GCAGGACGAGGCTCCACGACCGCATCACAGAGCAGCAGGAGCCGCCGGGT
GTCGGCGCCGCGGAAGCGGCCCGGCTACGGGAGGCGAGCGAGGAGAGGAA
GAGCTACGGGGGAAGCATCGCCGCGGCCGCGAAGGCGGTCGCGAACCCGG
GCTACGCGGACTCGGCGTGCGGGAGCGTTGTCATCCTCGACCGCGAGTCT
GGCATGGGGCTGTCCGTCCTCAACCCGTACGACGAAGTTGTCGTCGACAG
GACCGGCAGCGGCAGCGGGGGCGGCAACAAGGTGGCCATTTTCGCGGCCG
CGCCGTCCGCGGCGTCGTCGGGGAGAGGGGACGGCCGTCCCTCCGCTGTC
GTCGCCGCTACCGGCGCTACCGGCCGCTCGGGGTCCCGAGAGCGGAGTAA
CTCTTCGGGGTTGCGGCAGCTGGAGCAGAGACGGCCCTCCAGCCCGGCCG
GGCACATCCACACCGCGGAGCAGAAAGCGCGGCGGAGGCAGGAGGGGGGN
NNN
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