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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 2880.D7FYJ3 |
| ProteomeId | EsuBft62_14 |
| Protein domains | IPR012816 |
| Protein domains | SSF143990 |
| Protein domains | G3DSA |
| Protein domains | PTHR11079 |
| Protein domains | SSF56672 |
| Protein domains | IPR000477 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon os:drosophila melanogaster gn:pol pe:3 sv:1 [Automatic annotation] |
| Nb exon | 4 |
| Max annot lvl | 2759|Eukaryota |
| Length | 2362 |
| Hectar predicted targeting category | other localisation |
| Evalue | 5.27e-46 |
| EggNOG OGs | COG3236@1|root,2S4FY@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| KEGG ko | ko:K09935 |
| Description | Domain of unknown function (DUF1768) |
| COG category | S |
| BRITE | ko00000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft62_14a-0001 ID=EsuBft62_14a-0001|Name=EsuBft62_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2362bp|location=Sequence derived from alignment at Scaffold_195:507348..511367+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TTCGGGTGTCTCGAGGACGCTCGCCCCGATGTCTACGCCCCCCGGAGGCA TGGCTTCTTCGGCTTCTCCCATCGTTTCGGCGGCTCCGGGTGGCCTCGTC AACCACGCGGAAGCACAGGGACCTTCGGGACAGCCCCGGGCCCGCCACGG TGGATCGAGTACGCTTGTGCCCACCGCGCCCCCTCCGGACCCCTCGCGAC GTTCCCCTACGGAGCACCAACGTCGCACGGTGCTGACTGCACCACCGTTG TCGAGCGCAAGTAACGGTTTCCCAAAATCGGAAGGTTCATGTTCTTTGTC ACGAAGTAGCGGTCCCGAGCCTCCCGCGGCCGCTGGCCATGTTGGTCGAG CGCCCGCGATGAAGGCTGCTTTTAATGAACAGGCCTACGCCGACGTTTTG CGCGAAAACGCCCGCGTAGACCGCTTGGTTTCGCACGCTTCTGCGGCTGG TTCACCGCTTTTGCCTGCTTCTCCTCGTAGCTCACAATCCGGCCCGCCTT CGGGTGGCACCCAGATTGTCTTGCCGGTTGCCGGTGCCATTTCCCTTGAT GATATTTCTTCGGGGAAAGTAAGCGCACCCGCGCGGCAGGCCCCTGTTTT TAATGGAAGTCAGGAATATTACAACGATGAGGTTTTCCTCTTTTGGAAAC CGCCGTCCTTTCTGTATTATTGGACGCCCTGTGAATTCACGGTCCATGGC ATTCGCTACGTGTGCGGCGAACAGTTCATGATGGCGGAGAAAGCCTGCAT TTTCGGCGATGATGCCGCTTATGCCAAAATCATGTCTACCTCCGACCCGA GGGAACACAAGTCCCTTGGTCGCAGGGTACGCCGTTTTGACCATGCCCTC TGGGAGCTCCGACGCGAGGATGTCGTCTTTTCGCTTTTGTATGCAAAACT GGCCCAAAATGCTGACGCGCGCGAACGTTTGTTAGCTACGGGTGACAAAC AGATGGCGGAGGCTAGCCCTCATGACGGATTGTGGGGCATTGGTGTTGAT GCCTTCGATCCGCGTGCGGCGTCGCCCTCCAAGTGGACTGGTAAAAACCT CTTGGGCAAAGCGTTTGTTGCGACGCGCACGCTTATGCGTGTGCGACCAG TCGAACCCGATAAGCCTTTACGCCCTGAACACTCGGGGCAATCTGCCCCC GTGTGTCCCACTATACACGAAATTGCACCCCCGGGGGAGGATTCTTCAGC TGACGATCCCCCTTCCGAGGACGCGCGTGGCCCCTTGGGCGTGCCAGCGA ACACGCCCTCGGACCACTCGAAACAGGTGCTGCACATTGCCTCTGCTGCT TTTCGCGAAGCCGCCGCTTCCCCACCGCCCTGTTGGCGGAACACGGTCCA GATTTGCCTTGGCCAACAACCGCCGCCGCGTGTTGACCACATCATCAATC CACTGCACAAGGGCAAAGTGTTTTCTTTTCTCGATCTAAAGTCCGCTTTC CACCAGATCACAATCGAGGAGGGCACGGTTCAGCTTACGGCGTTTTGCAC GCCCACACAACTTTTCGAGTGGCTCCGTGTGCCTCAGGGAAGCTCCGTTG CACCGTCATGGTTCAATATGATCATCAACGAAGAAATTAAAGGCCTCGAC CATGTGCTTGCGTACCTAGACGATGTGGTTGTGTTTGACGCCGACCCCGT CGAAGCCCTCACACGAATGCCGCTGCCTAATAACGTCAAGCAGCTGCTTT CTTTGCTGGGTGGGCTTTCGTATTACCGCAAATTCATCAAGGGTTTGGCC GTGCGCGCTAAACCACTCACCGACCTTTTGCATAAGGATGCGAAGTTTTG TTATACGCCGGCTATGGCGAACACTGTCAAAGAATTCTTGGTGAAACTGT CCGAACCTCCGGTTTTGGCTTTCCCGGATTGGGACGCTGTCGCGAATGTC AGCCGCCCTCTCCGGCTTTGCTGTGACGCCTGTGTGGATGGTTTTGGTGC GGAACTTGAACAAGAACAGGCCGATAGTTCCGCTCGCCCCACTCTGTTCG TTAGCCGCGCTACGCTCGGATCCGAGCGCAATTGGACCGTGCTCGACTTG GAGGCTGGAAGTATCTTGTGGGCAATCAAACGCCTGCGCGGTTGCTTTTG GTCTACGCACTTTCTGATTTATTCGGACCAGAAGGCTTTGGAAAGCACCG TCAAGGTGGGTGGACACAATGCCCGTTGGCTCGAGTTCCTTTCCTCGTTC AATTACACCCTTGTCTACCGCAAAGGCACTGCCAACGCCAATGCGGATTT TCTTTCCCGGTTGCCCTTGCCGGCAACCGAAGCGGATAGACACGGTGACA CCAGTATCGCAGTCGATGACGTCTCGGGCGTTCATCTCATTCGTGCGTGC GGACGGAGTTGA back to topprotein sequence of EsuBft62_14a-0001 >EsuBft62_14 ID=EsuBft62_14|Name=EsuBft62_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=777bp
MSTPPGGMASSASPIVSAAPGGLVNHAEAQGPSGQPRARHGGSSTLVPTA PPPDPSRRSPTEHQRRTVLTAPPLSSASNGFPKSEGSCSLSRSSGPEPPA AAGHVGRAPAMKAAFNEQAYADVLRENARVDRLVSHASAAGSPLLPASPR SSQSGPPSGGTQIVLPVAGAISLDDISSGKVSAPARQAPVFNGSQEYYND EVFLFWKPPSFLYYWTPCEFTVHGIRYVCGEQFMMAEKACIFGDDAAYAK IMSTSDPREHKSLGRRVRRFDHALWELRREDVVFSLLYAKLAQNADARER LLATGDKQMAEASPHDGLWGIGVDAFDPRAASPSKWTGKNLLGKAFVATR TLMRVRPVEPDKPLRPEHSGQSAPVCPTIHEIAPPGEDSSADDPPSEDAR GPLGVPANTPSDHSKQVLHIASAAFREAAASPPPCWRNTVQICLGQQPPP RVDHIINPLHKGKVFSFLDLKSAFHQITIEEGTVQLTAFCTPTQLFEWLR VPQGSSVAPSWFNMIINEEIKGLDHVLAYLDDVVVFDADPVEALTRMPLP NNVKQLLSLLGGLSYYRKFIKGLAVRAKPLTDLLHKDAKFCYTPAMANTV KEFLVKLSEPPVLAFPDWDAVANVSRPLRLCCDACVDGFGAELEQEQADS SARPTLFVSRATLGSERNWTVLDLEAGSILWAIKRLRGCFWSTHFLIYSD QKALESTVKVGGHNARWLEFLSSFNYTLVYRKGTANANADFLSRLPLPAT EADRHGDTSIAVDDVSGVHLIRACGRS back to topmRNA from alignment at Scaffold_195:507348..511367+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft62_14a-0001 ID=EsuBft62_14a-0001|Name=EsuBft62_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4020bp|location=Sequence derived from alignment at Scaffold_195:507348..511367+ (Ectocarpus subulatus male Bft15b) TTCGGGTGTCTCGAGGACGCTCGCCCCGATGTCTACGCCCCCCGGAGGCA
TGGCTTCTTCGGCTTCTCCCATCGTTTCGGCGGCTCCGGGTGGCCTCGTC
AACCACGCGGAAGCACAGGGACCTTCGGGACAGCCCCGGGCCCGCCACGG
TGGATCGAGTACGCTTGTGCCCACCGCGCCCCCTCCGGACCCCTCGCGAC
GTTCCCCTACGGAGCACCAACGTCGCACGGTGCTGACTGCACCACCGTTG
TCGAGCGCAAGTAACGGTTTCCCAAAATCGGAAGGTTCATGTTCTTTGTC
ACGAAGTAGCGGTCCCGAGCCTCCCGCGGCCGCTGGCCATGTTGGTCGAG
CGCCCGCGATGAAGGCTGCTTTTAATGAACAGGCCTACGCCGACGTTTTG
CGCGAAAACGCCCGCGTAGACCGCTTGGTTTCGCACGCTTCTGCGGCTGG
TTCACCGCTTTTGCCTGCTTCTCCTCGTAGCTCACAATCCGGCCCGCCTT
CGGGTGGCACCCAGATTGTCTTGCCGGTTGCCGGTGCCATTTCCCTTGAT
GATATTTCTTCGGGGAAAGTAAGCGCACCCGCGCGGCAGGCCCCTGTTTT
TAATGGAAGTCAGGAATATTACAACGATGAGGTTTTCCTCTTTTGGAAAC
CGCCGTCCTTTCTGTATTATTGGACGCCCTGTGAATTCACGGTCCATGGC
ATTCGCTACGTGTGCGGCGAACAGTTCATGATGGCGGAGAAAGCCTGCAT
TTTCGGCGATGATGCCGCTTATGCCAAAATCATGTCTACCTCCGACCCGA
GGGAACACAAGTCCCTTGGTCGCAGGGTACGCCGTTTTGACCATGCCCTC
TGGGAGCTCCGACGCGAGGATGTCGTCTTTTCGCTTTTGTATGCAAAACT
GGCCCAAAATGCTGACGCGCGCGAACGTTTGTTAGCTACGGGTGACAAAC
AGATGGCGGAGGCTAGCCCTCATGACGGATTGTGGGGCATTGGTGTTGAT
GCCTTCGATCCGCGTGCGGCGTCGCCCTCCAAGTGGACTGGTAAAAACCT
CTTGGGCAAAGCGTTTGTTGCGACGCGCACGCTTATGCGTGTGCGACCAG
TCGAACCCGATAAGCCTTTACGCCCTGAACACTCGGGGCAATCTGCCCCC
GTGTGTCCCACTATACACGAAATTGCACCCCCGGGGGAGGATTCTTCAGC
TGACGATCCCCCTTCCGAGGACGCGCGTGGCCCCTTGGGCGTGCCAGCGA
ACACGCCCTCGGACCACTCGAAACAGGTGCTGCACATTGCCTCTGCTGCT
TTTCGCGAAGCCGCCGCTTCCCCACCGCCCTGTTGGCGGAACACGGTCCA
GATTTGGTGAGCGGTTATGTTTTAGTGGATTGCGATACCTCTACGACGCG
AGTCCGTGCGCATAGATAGTGGTACAGGACCCGTGTGTACAGCGCCTTGG
ACTCGGGCTTACCTTCACCTTTCATTAGTGATGCTTTCTTGAGGCCATGG
AGGCGTCAGGAGCTGCATCTGTCCATAGTCGTCGTTCGGTGCCCGTTCGG
CAGTGGGGTGGTTTTGGTTCTGGCAATGCTCTCGAAACCACCTCATTCGT
GCGGCTGTCCGTTCAATTTTTTATGGTGAAAGTGCCACCACTTCACTAGC
TGTGCGGTTGAATGTTGTCCCAGCTGCCGCCATGGGTCACGCCCTCCTTC
TTGGACGTGATAGTTGGATGCGTTTTAACTCTCGTTTGTCCACTACTTTG
CCCAAGCGGTCGGCGAGTGGATGAATCATGGAGCAACTTTCTCTTTCGTC
GGATTTTGCGGCCGGAGCTTCCGCGTATGTCGCTGGACCCTCCGCCCCCG
AGGCATCTTACTTCCTGCGGTACGCCGGCAGGAAGGATGTCTCCCTTTCC
GATAAACCCACAATGACGAGGGTGAACCTCGTTTGCAATTCCGGCACTCC
TGCCCTTACCGGCAACTATCTTGTCACGTTATTACCGAAACACGGCGCCC
TTTCAGCGTCGGACGCGTTTGTTTCGGACGGGCCTCAACACATCCCGTTG
GCAGAGTGCGCCGAGTGGGAGCCCGGTGACGTGCATGGAGTGGCGACTGC
CCCACTTGTGCAGATTCCGCTCGCGTCGATTGATCCCACACCGCAGACGG
CCGAGGGTATTGGGTCGAGTGACCCTACGCCGCCGACCCGTTCTGAAAAT
GGGCCGCCGTCTCGCGTGAATTCTTTGCATTCGAACATCCCGGTTGCGGA
TCCGAAGATCTCTACCTCTCCCGCGGCCCCACTGCCGCCGAAACCACCGC
CACCGGAACTGTTGGAACGCCTCTCGGACGTGCAGCGAGTGAGTTTTCGC
GAGTTGTGGCAACGTTTGCCTGCACATTTGCACGATGTCGCTTTTGACTT
ACAGGACTCGGGTTGGACCCCGGAAGCCATCGCCTGGCGGATGTGCTGTG
TGACTTTTCGGATGTGTTTTCGCGGTCACCGTCCGATTTCGGTTGCTGCT
CCGTGAAACAGTTTCGTTTGGAAGTGCCCGCGGACGCGAAACCGTTGGCC
TCGCGTCCCTATAGGCTCAATCCTCTGGTGGAGAAGAAGATCGATGCAAT
TCTGGATCAATACCTTGCTGCCGGTCTTATCCAGCACTCGCAATCGCCGT
GGGCGAGCCCTCTGGTTGTCATGCCTAAAAAGGACGACAATCTGCGTTTG
ACCGTGAACTACAAAAAACTAAACAATTGTGCAGCCTTGGCCAACAACCG
CCGCCGCGTGTTGACCACATCATCAATCCACTGCACAAGGGCAAAGTGTT
TTCTTTTCTCGATCTAAAGTCCGCTTTCCACCAGATCACAATCGAGGAGG
GCACGGTTCAGCTTACGGCGTTTTGCACGCCCACACAACTTTTCGAGTGG
CTCCGTGTGCCTCAGGGAAGCTCCGTTGCACCGTCATGGTTCAATATGAT
CATCAACGAAGAAATTAAAGGCCTCGACCATGTGCTTGCGTACCTAGACG
ATGTGGTTGTGTTTGACGCCGACCCCGTCCATCATGTCGCCAACATACGG
TTATTTTTGGAGCGTTTGCGCAAGTACAACCTTAAGAGGCTGTATATTTA
GGCCACACCATCTCCCCTGCGGGTGTTGGTTCTCGTACCGATAAGGTCGA
AGCCCTCACACGAATGCCGCTGCCTAATAACGTCAAGCAGCTGCTTTCTT
TGCTGGGTGGGCTTTCGTATTACCGCAAATTCATCAAGGGTTTGGCCGTG
CGCGCTAAACCACTCACCGACCTTTTGCATAAGGATGCGAAGTTTTGTTA
TACGCCGGCTATGGCGAACACTGTCAAAGAATTCTTGGTGAAACTGTCCG
AACCTCCGGTTTTGGCTTTCCCGGATTGGGACGCTGTCGCGAATGTCAGC
CGCCCTCTCCGGCTTTGCTGTGACGCCTGTGTGGATGGTTTTGGTGCGGA
ACTTGAACAAGAACAGGCCGATAGTTCCGCTCGCCCCACTCTGTTCGTTA
GCCGCGCTACGCTCGGATCCGAGCGCAATTGGACCGTGCTCGACTTGGAG
GCTGGAAGTATCTTGTGGGCAATCAAACGCCTGCGCGGTTGCTTTTGGTC
TACGCACTTTCTGATTTATTCGGACCAGAAGGCTTTGGAAAGCACCGTCA
AGGTGGGTGGACACAATGCCCGTTGGCTCGAGTTCCTTTCCTCGTTCAAT
TACACCCTTGTCTACCGCAAAGGCACTGCCAACGCCAATGCGGATTTTCT
TTCCCGGTTGCCCTTGCCGGCAACCGAAGCGGATAGACACGGTGACACCA
GTATCGCAGTCGATGACGTCTCGGGCGTTCATCTCATTCGTGCGTGCGGA
CGGAGGTATCACTCTAGTTCGACGCCGAACATCGGCTTGGGTGGGCTTGA
AATTGACGATCAACGAGACGCTTTGGCACACTCGCCTTTGACGGAGGATG
ACTTTGGGGACTTCCGCCGTTTTGGGCCACAAATGGTCCTGCCGGCTCCG
TCGCCCTCCTCCGTAGTTGA back to topCoding sequence (CDS) from alignment at Scaffold_195:507348..511367+ >EsuBft62_14a-0001 ID=EsuBft62_14a-0001|Name=EsuBft62_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2334bp|location=Sequence derived from alignment at Scaffold_195:507348..511367+ (Ectocarpus subulatus male Bft15b) ATGTCTACGCCCCCCGGAGGCATGGCTTCTTCGGCTTCTCCCATCGTTTC GGCGGCTCCGGGTGGCCTCGTCAACCACGCGGAAGCACAGGGACCTTCGG GACAGCCCCGGGCCCGCCACGGTGGATCGAGTACGCTTGTGCCCACCGCG CCCCCTCCGGACCCCTCGCGACGTTCCCCTACGGAGCACCAACGTCGCAC GGTGCTGACTGCACCACCGTTGTCGAGCGCAAGTAACGGTTTCCCAAAAT CGGAAGGTTCATGTTCTTTGTCACGAAGTAGCGGTCCCGAGCCTCCCGCG GCCGCTGGCCATGTTGGTCGAGCGCCCGCGATGAAGGCTGCTTTTAATGA ACAGGCCTACGCCGACGTTTTGCGCGAAAACGCCCGCGTAGACCGCTTGG TTTCGCACGCTTCTGCGGCTGGTTCACCGCTTTTGCCTGCTTCTCCTCGT AGCTCACAATCCGGCCCGCCTTCGGGTGGCACCCAGATTGTCTTGCCGGT TGCCGGTGCCATTTCCCTTGATGATATTTCTTCGGGGAAAGTAAGCGCAC CCGCGCGGCAGGCCCCTGTTTTTAATGGAAGTCAGGAATATTACAACGAT GAGGTTTTCCTCTTTTGGAAACCGCCGTCCTTTCTGTATTATTGGACGCC CTGTGAATTCACGGTCCATGGCATTCGCTACGTGTGCGGCGAACAGTTCA TGATGGCGGAGAAAGCCTGCATTTTCGGCGATGATGCCGCTTATGCCAAA ATCATGTCTACCTCCGACCCGAGGGAACACAAGTCCCTTGGTCGCAGGGT ACGCCGTTTTGACCATGCCCTCTGGGAGCTCCGACGCGAGGATGTCGTCT TTTCGCTTTTGTATGCAAAACTGGCCCAAAATGCTGACGCGCGCGAACGT TTGTTAGCTACGGGTGACAAACAGATGGCGGAGGCTAGCCCTCATGACGG ATTGTGGGGCATTGGTGTTGATGCCTTCGATCCGCGTGCGGCGTCGCCCT CCAAGTGGACTGGTAAAAACCTCTTGGGCAAAGCGTTTGTTGCGACGCGC ACGCTTATGCGTGTGCGACCAGTCGAACCCGATAAGCCTTTACGCCCTGA ACACTCGGGGCAATCTGCCCCCGTGTGTCCCACTATACACGAAATTGCAC CCCCGGGGGAGGATTCTTCAGCTGACGATCCCCCTTCCGAGGACGCGCGT GGCCCCTTGGGCGTGCCAGCGAACACGCCCTCGGACCACTCGAAACAGGT GCTGCACATTGCCTCTGCTGCTTTTCGCGAAGCCGCCGCTTCCCCACCGC CCTGTTGGCGGAACACGGTCCAGATTTGCCTTGGCCAACAACCGCCGCCG CGTGTTGACCACATCATCAATCCACTGCACAAGGGCAAAGTGTTTTCTTT TCTCGATCTAAAGTCCGCTTTCCACCAGATCACAATCGAGGAGGGCACGG TTCAGCTTACGGCGTTTTGCACGCCCACACAACTTTTCGAGTGGCTCCGT GTGCCTCAGGGAAGCTCCGTTGCACCGTCATGGTTCAATATGATCATCAA CGAAGAAATTAAAGGCCTCGACCATGTGCTTGCGTACCTAGACGATGTGG TTGTGTTTGACGCCGACCCCGTCGAAGCCCTCACACGAATGCCGCTGCCT AATAACGTCAAGCAGCTGCTTTCTTTGCTGGGTGGGCTTTCGTATTACCG CAAATTCATCAAGGGTTTGGCCGTGCGCGCTAAACCACTCACCGACCTTT TGCATAAGGATGCGAAGTTTTGTTATACGCCGGCTATGGCGAACACTGTC AAAGAATTCTTGGTGAAACTGTCCGAACCTCCGGTTTTGGCTTTCCCGGA TTGGGACGCTGTCGCGAATGTCAGCCGCCCTCTCCGGCTTTGCTGTGACG CCTGTGTGGATGGTTTTGGTGCGGAACTTGAACAAGAACAGGCCGATAGT TCCGCTCGCCCCACTCTGTTCGTTAGCCGCGCTACGCTCGGATCCGAGCG CAATTGGACCGTGCTCGACTTGGAGGCTGGAAGTATCTTGTGGGCAATCA AACGCCTGCGCGGTTGCTTTTGGTCTACGCACTTTCTGATTTATTCGGAC CAGAAGGCTTTGGAAAGCACCGTCAAGGTGGGTGGACACAATGCCCGTTG GCTCGAGTTCCTTTCCTCGTTCAATTACACCCTTGTCTACCGCAAAGGCA CTGCCAACGCCAATGCGGATTTTCTTTCCCGGTTGCCCTTGCCGGCAACC GAAGCGGATAGACACGGTGACACCAGTATCGCAGTCGATGACGTCTCGGG CGTTCATCTCATTCGTGCGTGCGGACGGAGTTGA back to top
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