EsuBft62_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft62_12a-0001
Unique NameEsuBft62_12a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_195contigScaffold_195:465322..466814 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LKD5
ProteomeIdEsuBft62_12
Protein domainsSignalP-noTM
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length42
Hectar predicted targeting categoryother localisation
Evalue1.28e-21
EggNOG OGsCOG0631@1|root,KOG0698@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K01090
EC3.1.3.16
Descriptionprotein serine/threonine phosphatase activity
COG categoryT
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft62_12aEsuBft62_12aEctocarpus subulatus male Bft15bgeneScaffold_195 465322..466814 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft62_12a-0001-exonagat-exon-18723Ectocarpus subulatus male Bft15bexonScaffold_195 465322..465363 -
EsuBft62_12a-0001-exonEsuBft62_12a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_195 465562..465802 -
EsuBft62_12a-0001-exonagat-exon-18722Ectocarpus subulatus male Bft15bexonScaffold_195 466675..466814 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft62_12a-0001-cdsEsuBft62_12a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_195 465322..465363 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft62_12a-0001EsuBft62_12Ectocarpus subulatus male Bft15bpolypeptideScaffold_195 465322..466814 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft62_12a-0001 ID=EsuBft62_12a-0001|Name=EsuBft62_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=423bp|location=Sequence derived from alignment at Scaffold_195:465322..466814- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAGCGGCGGCCAGAGCAGAGGCGGCGGCGGCAGCGGCGGCGGCGGC
GGCGGCGGCGGCGGCGGCGGCTGGCGGGGAGGGTGGGGGTACCCCCTGCG
CCCGTTGCGGGACCCCGCCTTCCAATGACGCGGAGGAAGGCATGATGTTC
GATATGGGCGCGATGGACATGGACTTGGGCCTAGCACCACCTCCGCGGTC
GGCAACACCACCTCCACCTCCTCAGCAGCCCGCTGCATCACCAGCACCCG
TCTTCATAGGTAGCGGGAGCGGTGGTGGCGCAAACGGCAGCAACCATGTG
GTCGGGCCGTTAGGGGGAGGGGGGATGGGGCTGACAGCTTCGAGGGGATC
GGGGTTCCCGTGGCCTCCGGCGATCAGGGAGCAAGTATCGAATGACCGAC
CATCGCGAGCAGCAAACACATGA
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protein sequence of EsuBft62_12a-0001

>EsuBft62_12 ID=EsuBft62_12|Name=EsuBft62_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=140bp
MRAAARAEAAAAAAAAAAAAAAAAGGEGGGTPCARCGTPPSNDAEEGMMF
DMGAMDMDLGLAPPPRSATPPPPPQQPAASPAPVFIGSGSGGGANGSNHV
VGPLGGGGMGLTASRGSGFPWPPAIREQVSNDRPSRAANT
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mRNA from alignment at Scaffold_195:465322..466814-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft62_12a-0001 ID=EsuBft62_12a-0001|Name=EsuBft62_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1493bp|location=Sequence derived from alignment at Scaffold_195:465322..466814- (Ectocarpus subulatus male Bft15b)
ATGCGAGCGGCGGCCAGAGCAGAGGCGGCGGCGGCAGCGGCGGCGGCGGC
GGCGGCGGCGGCGGCGGCGGCTGGCGGGGAGGGTGGGGGTACCCCCTGCG
CCCGTTGCGGGACCCCGCCTTCCAATGACGCGGAGGAAGGGTGAGAGAGA
TGATATCAGCACTATATAGCTCTACGGTAATAGCAGTGGGCCCTGAATTA
AGAGTTGCACTCCAGTTCCTGTAGTTCGGCCGCATGGTAGTGCCAAGGGG
TTTGGACGGAGGTGCACGGGCCACCCGATACTATCAACGAAAGTACTGAG
AAAACCTTCCTTTGTCTTCTTTCGCTCTCGTCTCTCCTCACCTTTCGCCG
GTGGGATTGGGGTCCCCACCACAGCCAACCGTGATTGAATATCCATTCCT
CCATCCGTGTCACACGATTTTTGCCGGCCTTGCACTTGCTGTGCAAGGGG
CGATCGGCCTAAGTTTTTGCGGCCTTAATGCTCACCAGGGACTCACGTTT
TTTCGCCCTGTGAGGTAGCACACTCACATGATTGCACCGATGATAAGACA
CTACCTGCTCCACTACAAACTTAACATGTAAACACGATCAGGAACGACTT
GCGGGGTATTGCAGCGGGTTGTTGGAGCGAGGTGCTGGGTGCTGCGGTCG
TTGACTTATGCGCTATCTATAATAATTGGTGTTGGTAGCGTATGGTTGAT
GGCCAGTGCTGTTGGTACCAGTAGCAGTTGTACATGCAGAAGATCGCACT
CGCGTACTAGCGGTGCTCGCCACCACGTTGCAACAAGTTGGGTGTATAAC
CCTTCGGCGACTATACATGTAGACCATACGGCGACTTTACATCTAGGTCT
ACGGCCACGATTCTTACTCTGCATGCTCAAGTTCTTGAAGTTGTATCTTT
CTGAACCTGGTAATGGCGAGTCCTGTGTGTAAAGACGCCCAATGCGTGGG
GACCATACCACGTGACACAAACGCTGCACAAACGCTCTTTGATGCACATG
TAATACATGCAGCATGATGTTCGATATGGGCGCGATGGACATGGACTTGG
GCCTAGCACCACCTCCGCGGTCGGCAACACCACCTCCACCTCCTCAGCAG
CCCGCTGCATCACCAGCACCCGTCTTCATAGGTAGCGGGAGCGGTGGTGG
CGCAAACGGCAGCAACCATGTGGTCGGGCCGTTAGGGGGAGGGGGGATGG
GGCTGACAGCTTCGAGGGGATCGGGGTTCCCGTGGCCTCCGGCGATCAGG
GAGGTGAGCGTGCTTCTTTTTTTTTTTTGTTGCACAGGAAACGCGTCTTC
TGTTTTTCCCCGCAGAACCTACATCTACTTCTTTCTTTCGCAGAAACTAC
CTCGTTTTTTTTTTCACAGTTTTTGTGTTTGCTACAATTTTTCCGAGGTT
ATGACGCTCCCCGCTCCCTCTCTATTTTTCCGACCCCTTCAGTTTTCGCA
GCAAGTATCGAATGACCGACCATCGCGAGCAGCAAACACATGA
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Coding sequence (CDS) from alignment at Scaffold_195:465322..466814-

>EsuBft62_12a-0001 ID=EsuBft62_12a-0001|Name=EsuBft62_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=423bp|location=Sequence derived from alignment at Scaffold_195:465322..466814- (Ectocarpus subulatus male Bft15b)
ATGCGAGCGGCGGCCAGAGCAGAGGCGGCGGCGGCAGCGGCGGCGGCGGC
GGCGGCGGCGGCGGCGGCGGCTGGCGGGGAGGGTGGGGGTACCCCCTGCG
CCCGTTGCGGGACCCCGCCTTCCAATGACGCGGAGGAAGGCATGATGTTC
GATATGGGCGCGATGGACATGGACTTGGGCCTAGCACCACCTCCGCGGTC
GGCAACACCACCTCCACCTCCTCAGCAGCCCGCTGCATCACCAGCACCCG
TCTTCATAGGTAGCGGGAGCGGTGGTGGCGCAAACGGCAGCAACCATGTG
GTCGGGCCGTTAGGGGGAGGGGGGATGGGGCTGACAGCTTCGAGGGGATC
GGGGTTCCCGTGGCCTCCGGCGATCAGGGAGCAAGTATCGAATGACCGAC
CATCGCGAGCAGCAAACACATGA
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