EsuBft629_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft629_6a-0001
Unique NameEsuBft629_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_499contigScaffold_499:267823..272775 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft629_6
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length200
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft629_6aEsuBft629_6aEctocarpus subulatus male Bft15bgeneScaffold_499 267823..272775 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft629_6a-0001EsuBft629_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_499 268941..269966 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft629_6a-0001-exonEsuBft629_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_499 267823..269286 -
EsuBft629_6a-0001-exonagat-exon-70091Ectocarpus subulatus male Bft15bexonScaffold_499 269505..269599 -
EsuBft629_6a-0001-exonagat-exon-70090Ectocarpus subulatus male Bft15bexonScaffold_499 269862..270031 -
EsuBft629_6a-0001-exonagat-exon-70092Ectocarpus subulatus male Bft15bexonScaffold_499 272504..272775 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft629_6a-0001-exonagat-three_prime_utr-19412Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_499 267823..268940 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft629_6a-0001-cdsEsuBft629_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_499 268941..269286 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft629_6a-0001-exonagat-five_prime_utr-12393Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_499 269967..270031 -
EsuBft629_6a-0001-exonagat-five_prime_utr-12394Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_499 272504..272775 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft629_6a-0001 ID=EsuBft629_6a-0001|Name=EsuBft629_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2001bp|location=Sequence derived from alignment at Scaffold_499:267823..272775- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCGATAGAGAGAGTTCTAGGCGTGCGCTCAGAAGCAGCTACGTCAGAACC
GTCTCGACGCTACGAGGAGGGTCTTCACTAGCGGGAGCGAGCGTTGCAAT
TTTTACTTCGTAGGGGGAGCGGAGCCTACCCAGACTGAGGCAGCAGCGTT
GGAGAGCGTACGCGGTGGGCACAAGAGGCAGATTTGTAGAGGCTTAGGAG
GTTGGGCGAGAGCGATAGGGCACCTGCTCGGAAAGCACACTAGCGATTAG
GCGGGGACTGGAGACTCTCGAGGGACAAGAGCGGAGGGCATGAGGAGCAC
ACTTCTTCCTAATGGAGCACTGCCGCCACTGCCACAGATGTCTGCCGAAG
ACCAAAGGAGAGTGAAAGCCCGCGAAGCTTCACAGAGGCAGTACAAAAGA
AGAAGAGAGGAAAAAGAAGCTCACAATCGCGCTGCGCAAGAGGTGGAGAA
ACGTTCGGCAGAGATCCAGCTACCCTTGGGTGGTGAGCATGAGCCGCTTG
CAGTTGGCGCGATGGGCCTGGAAAGCGGTGAAGCATCCTCTATCCTCAAT
CCGTATGCTCAAGATAACATCGACCCCGAAGAGGCCAGGAAAGCTATTCA
GAGCTACGTCGCTGGAATGAAGCGCATCGACAGCACTCTATTGGGTACCG
CAAGACACACGGCTGCACAGCTGCTGATCGACACTTTTCTGGCAACACCC
TACGGTAAACTAGCACGGTTGAAGCTCCTGACAGACGGGAAGGCTTTCGT
CCCCCTGTTCCTTTCAGAGCAGCAAGCTAAGGAAAAGACAAAGTCGATGC
TCTCGAGCGTGGCACAGCTTGTGGAAGACAGCGGAGGTGTGGTAAAGAGG
GCCATGCTGATGAAAAAGTATGACCGCATTTAAGAGTCAGCACAGGTTTA
TGATCCCACCTGGCGACCTGGCGGGTGAATTTGTACCTTACGCCACGGAA
ATGGAAGAGACAATGATGTACATCCTACGAGCTCTCGACAGTTCAGGGTA
CGATCACATCCTGGTGGAGAAGAGTACTTGCTTGGTCAGCCTCTTCAAAA
TCTTGGCGCAGGCGAGCTGGCTCGGTAGTGATGCTTGTGATGCGGGTGCG
CGGAGGTTGTTCACGCGCGGTCACCTCCCCGGAGCCCCCTGATGGAAGTT
ATTTTGACTCGTTCATTTCACACAGATTTTCATACCATGTACCACCCCGA
TGCAATGCCAAACACTTCATCACCTCCCGCCTCCTCTCAACGATCGCAGA
TTTTGCACAGGGACCAACATCTGCAGAAAATCAACGAACAGCTGGACGGC
AAAGGCGGAGCTGCCACTCGAAATAACACTCGACGTCAGCCGCCTCCGTA
TTCCGCCCTCTGCTCGTTCCAACCGGGGACTAGCCTTCGCTGTGTGGCTG
GCAGTCACTTGGTCAACAGCAGGGAATACAAGAAGGAGGACGGTGTCGAC
TGCCCACTACCACTGGGATGGGGGCTGTTGTGGCACGGGCTGTTCGTCCA
TGCAGGCGCCGAATGCTCTGTCCCATGGCACGCTCGACTCCACATGTACC
TTCGCGTGTTGGGTTGTTCGGATGCAGTTACCGGCAAGATTGACTTGGCC
GAAGCGTCCTAGGGGTGAAGGCATCTCTTCGTCTTGTAGTTTTTATTAGG
CGTCCGTCTCTTGTGATGGCGATCTGGCCGAGGGCGGGCGTAGCTCCCAG
CGCCTGTTTGAATTCCAAAGAGCAAGGCAAAAAAAGAAGTCGAGCCAAGC
GGGAAAACTCAGTGCGCCTCTCGGGGCCTTTGGTTGCCACCGGAACAGAG
GGTAGGTTGGGTAACGATGGCGCAGTCGCCTTTGAAAAAAATTGGGGCGA
GTGGTACAGGCGGTGCCGATCTTCAAATTCATGCAGCTTTGACGCGGTTG
GAACTTTTCGGCTCGCAGGAGACATGGGTCTCCGCCGTAGATGAGTTTTT
TCTGATGTTGGTTCCAATCCCGAAGAGATCAAGGCTGGTATTAAGAGAGA
T
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protein sequence of EsuBft629_6a-0001

>EsuBft629_6 ID=EsuBft629_6|Name=EsuBft629_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=181bp
MSAEDQRRVKAREASQRQYKRRREEKEAHNRAAQEVEKRSAEIQLPLGGE
HEPLAVGAMGLESGEASSILNPYAQDNIDPEEARKAIQSYVAGMKRIDST
LLGTARHTAAQLLIDTFLATPYGKLARLKLLTDGKAFVPLFLSEQQAKEK
TKSMLSSVAQLVEDSGGVVKRAMLMKKYDRI
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mRNA from alignment at Scaffold_499:267823..272775-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft629_6a-0001 ID=EsuBft629_6a-0001|Name=EsuBft629_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4953bp|location=Sequence derived from alignment at Scaffold_499:267823..272775- (Ectocarpus subulatus male Bft15b)
GCGATAGAGAGAGTTCTAGGCGTGCGCTCAGAAGCAGCTACGTCAGAACC
GTCTCGACGCTACGAGGAGGGTCTTCACTAGCGGGAGCGAGCGTTGCAAT
TTTTACTTCGTAGGGGGAGCGGAGCCTACCCAGACTGAGGCAGCAGCGTT
GGAGAGCGTACGCGGTGGGCACAAGAGGCAGATTTGTAGAGGCTTAGGAG
GTTGGGCGAGAGCGATAGGGCACCTGCTCGGAAAGCACACTAGCGATTAG
GCGGGGACTGGAGACTCTCGAGGTAAGCAGTGTCAGGAAGCATGTGGGAA
TTTTCGAGTATGCCATCTCGTGGTCAAGGCCCTATGCACGCGAAACCGAA
AAGGCGCGTGTGATGATGCACGGTGCGAACGGGGCAACAAAAGCACGCAT
CGTCCAATCGCGTAGTTGGCGAGAGGGAGGGCCGAAGTTACGCATGTGGC
TTAGTCAGATAGGCATGGCCGACAGTCACCGGCAAGCAGAGAGAAATCGA
TCCCAAATTTTTGCCAAATCAGCACACCGCGGCAGGCAAAACAGACCGCA
TTTCAGTTCACCATACCAGAGTAGCGAGGGGTCTAGAGCCCGGAGAACAT
GACAACTTCGCTGGGATCCCGCTACACTATCCCCCTGTGCTTGGCAGCCA
CGGGCGCATTCGCATATGGTCTGTTAAGCGTGGTCGCATAAAGAAAGTGG
AGTTTTCCGCAAAATGTTTTTGAGGAAAAGCGGAGGCACAGCGGCAGCGG
TAGAGGCAAGGTCGGTGGAACCGACCATGGGATTACCATCCCTCGGCCGT
CTGATCTGTGTTGGAGCTGTCCTTCGAACCAATATCCATGATCACCTAGG
GCACCACTTCACCAAACGTAGAGCCCCATCCGTCCAGGAGGAAGGGCGCA
CAGCAGTATTCCCGGTCCCGATGTTACAAATTTCACCGCAACATCAAGGC
AGCGTGTGTGCATTCGTCCAGACACAGATTTAACGGTGGTTTGTAACGTG
CTTTTGGGCGGGTCGCATAGAGTATGACTTCAAATGCGCTCGAGAATCGC
CCATGGCTGCTTCGTGCATGTTCACATTAGATCGTGCGTTGTTTGTTTGA
GCCAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCTAAAGG
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGC
AATTGGGTGGAGGACGCATGGAGAGTAGCACACGCCTCAGAGCCGGTTAC
TGTGCCGTAGTACTAGAAATCTCCCAAAAGCTGGGGCAGTTCCCAGGTCT
AGAAACTCCTGGACGTTGGGATATGAGAGCATGACTTCGAGGCCCTAAAA
TCAAAGGATAGACAGCGCCGGCGGTACCGGGAGGCTGAGTTCAAACATGT
GTGCGTCCTCAGCAACGGCACCATTGATCGCTTAGGTTTCGCTCGTCCCT
AGACCCTACTTAATAACGGTAGTCCAAGCGAGAACTGATTTGGCAAACCA
GGGCACACGTTTGCTCACAAACCTCACATTGATACAGCGGAATCAGATCT
TGACAGGTGTTTTTCGAAGTGAAAAGGTGTTGGCGACATAGCCCAGACTA
GCTTCGGCGGGCATGGTCCTCGGGTTCCGAAATTTGTCACAGGGTTTCTG
GCACCACCACCGGACCCGCTTTCAATTCTGGTATTTCGTTTTCGGGGAGA
AGTCTCCCTGTGGCCTAGTTTCACCGCCTGATTCAATCAGTGAGACAGAA
GGTTGGCAGCGGCACAGCGAGGTAGGCCGGCCCAGCCGGGGGATGGCTCT
TCCTCGGCCGTATGATGAGTGTTGAAGCTGCCAATCAATCCACTGGACAG
GGCTGAACAGGACAACACGTCATGCAAAGTAGAGCTCCAGCCGTCGAGTA
TGAAGGTCACACAGCAGTTTCGCAGGCCCCCTGTTTATACTAAAAAAGTA
ACGAAAATCATAGCCAACAAGTCTCGCCGAGGCAACCACGAGTGTTCAAT
CGCCCGCCTGCAGATTAACTACGGTTTATCACGCTGTTCTTGGCGAGTTG
CATACATGGTGAATTCAAAACCGTTCGAGAATCGTCCTTGGCTGCTTCGA
TTTATGTTCACCATAGCGCATTTATTTATTTCCGCCAGCGTGGCCCAAAA
AGAGAAAAAATAACACAGGAGAGGAGAACTCAGCTCAGGCTACGGCGGTA
CTGCTCAACGTGTACTTGAATCGGCGAAGCAACTTGTACCGCCACACTTT
GTTCTCTCTTTTTGTTTTGTTTTTGCTTGTCCGGGGTGTGTCAGGGACAA
GAGCGGAGGGCATGAGGAGCACACTTCTTCCTAATGGAGCACTGCCGCCA
CTGCCACAGATGTCTGCCGAAGACCAAAGGAGAGTGAAAGCCCGCGAAGC
TTCACAGAGGCAGTACAAAAGAAGAAGAGAGGAAAAAGAAGCTCACAATC
GCGCTGCGCAAGAGGTATGTCTTGATGTAGTATTGATTTGCTCGTAGAAC
CTGTGGCAAGTGGGCCTTGCTTGCTTGACCAAGGAAGTACGTTGTGTTAC
GGACCGATGCAGAGCTGTGCTTGGCACGAGTGGAAGTAGGACGTCCTCTG
GGGGGAAAGTAAGCATGAAACGACGCTGGTTAAGCTGACTTTGAATTCGT
GCTGCGATGCTGCTTTTGATGCTGCTACAAGAAGAAAGAATGATGGCTTG
GATCATATGCTTCTTTTTTTAAGCAGGTGGAGAAACGTTCGGCAGAGATC
CAGCTACCCTTGGGTGGTGAGCATGAGCCGCTTGCAGTTGGCGCGATGGG
CCTGGAAAGCGGTGAAGCATCGTAAGTCACAACAACTAGTTTGTAAAGCT
GGGGGGAACAAAGCTACTCTGCTCGTTTGCCGAATGTCGTGTCCGTGTAA
GGTGTGCTCAGCTGGAAAGTAAGCTGATTTGAGAGCAGAACTGGCCCGCT
TCACGCTCAGCGTTTGGACATGTGATATTCTTAAGGTAGTCAACACCCCT
TCTCTCTCTGCACCGCCCGCGCGCGCACTTAAAACAAAGCTCTATCCTCA
ATCCGTATGCTCAAGATAACATCGACCCCGAAGAGGCCAGGAAAGCTATT
CAGAGCTACGTCGCTGGAATGAAGCGCATCGACAGCACTCTATTGGGTAC
CGCAAGACACACGGCTGCACAGCTGCTGATCGACACTTTTCTGGCAACAC
CCTACGGTAAACTAGCACGGTTGAAGCTCCTGACAGACGGGAAGGCTTTC
GTCCCCCTGTTCCTTTCAGAGCAGCAAGCTAAGGAAAAGACAAAGTCGAT
GCTCTCGAGCGTGGCACAGCTTGTGGAAGACAGCGGAGGTGTGGTAAAGA
GGGCCATGCTGATGAAAAAGTATGACCGCATTTAAGAGTCAGCACAGGTT
TATGATCCCACCTGGCGACCTGGCGGGTGAATTTGTACCTTACGCCACGG
AAATGGAAGAGACAATGATGTACATCCTACGAGCTCTCGACAGTTCAGGG
TACGATCACATCCTGGTGGAGAAGAGTACTTGCTTGGTCAGCCTCTTCAA
AATCTTGGCGCAGGCGAGCTGGCTCGGTAGTGATGCTTGTGATGCGGGTG
CGCGGAGGTTGTTCACGCGCGGTCACCTCCCCGGAGCCCCCTGATGGAAG
TTATTTTGACTCGTTCATTTCACACAGATTTTCATACCATGTACCACCCC
GATGCAATGCCAAACACTTCATCACCTCCCGCCTCCTCTCAACGATCGCA
GATTTTGCACAGGGACCAACATCTGCAGAAAATCAACGAACAGCTGGACG
GCAAAGGCGGAGCTGCCACTCGAAATAACACTCGACGTCAGCCGCCTCCG
TATTCCGCCCTCTGCTCGTTCCAACCGGGGACTAGCCTTCGCTGTGTGGC
TGGCAGTCACTTGGTCAACAGCAGGGAATACAAGAAGGAGGACGGTGTCG
ACTGCCCACTACCACTGGGATGGGGGCTGTTGTGGCACGGGCTGTTCGTC
CATGCAGGCGCCGAATGCTCTGTCCCATGGCACGCTCGACTCCACATGTA
CCTTCGCGTGTTGGGTTGTTCGGATGCAGTTACCGGCAAGATTGACTTGG
CCGAAGCGTCCTAGGGGTGAAGGCATCTCTTCGTCTTGTAGTTTTTATTA
GGCGTCCGTCTCTTGTGATGGCGATCTGGCCGAGGGCGGGCGTAGCTCCC
AGCGCCTGTTTGAATTCCAAAGAGCAAGGCAAAAAAAGAAGTCGAGCCAA
GCGGGAAAACTCAGTGCGCCTCTCGGGGCCTTTGGTTGCCACCGGAACAG
AGGGTAGGTTGGGTAACGATGGCGCAGTCGCCTTTGAAAAAAATTGGGGC
GAGTGGTACAGGCGGTGCCGATCTTCAAATTCATGCAGCTTTGACGCGGT
TGGAACTTTTCGGCTCGCAGGAGACATGGGTCTCCGCCGTAGATGAGTTT
TTTCTGATGTTGGTTCCAATCCCGAAGAGATCAAGGCTGGTATTAAGAGA
GAT
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Coding sequence (CDS) from alignment at Scaffold_499:267823..272775-

>EsuBft629_6a-0001 ID=EsuBft629_6a-0001|Name=EsuBft629_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=546bp|location=Sequence derived from alignment at Scaffold_499:267823..272775- (Ectocarpus subulatus male Bft15b)
ATGTCTGCCGAAGACCAAAGGAGAGTGAAAGCCCGCGAAGCTTCACAGAG
GCAGTACAAAAGAAGAAGAGAGGAAAAAGAAGCTCACAATCGCGCTGCGC
AAGAGGTGGAGAAACGTTCGGCAGAGATCCAGCTACCCTTGGGTGGTGAG
CATGAGCCGCTTGCAGTTGGCGCGATGGGCCTGGAAAGCGGTGAAGCATC
CTCTATCCTCAATCCGTATGCTCAAGATAACATCGACCCCGAAGAGGCCA
GGAAAGCTATTCAGAGCTACGTCGCTGGAATGAAGCGCATCGACAGCACT
CTATTGGGTACCGCAAGACACACGGCTGCACAGCTGCTGATCGACACTTT
TCTGGCAACACCCTACGGTAAACTAGCACGGTTGAAGCTCCTGACAGACG
GGAAGGCTTTCGTCCCCCTGTTCCTTTCAGAGCAGCAAGCTAAGGAAAAG
ACAAAGTCGATGCTCTCGAGCGTGGCACAGCTTGTGGAAGACAGCGGAGG
TGTGGTAAAGAGGGCCATGCTGATGAAAAAGTATGACCGCATTTAA
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