EsuBft629_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft629_3a-0001
Unique Name	EsuBft629_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_499	contig	Scaffold_499:289923..291247 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft629_3
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	118
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft629_3a	EsuBft629_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_499 289923..291247 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft629_3a-0001-exon	agat-exon-70081	Ectocarpus subulatus male Bft15b	exon	Scaffold_499 289923..290280 -
EsuBft629_3a-0001-exon	EsuBft629_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_499 290418..291247 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft629_3a-0001-cds	EsuBft629_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_499 289923..290280 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft629_3a-0001	EsuBft629_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_499 289923..291247 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_499:289923..291247-
coding sequence from alignment at Scaffold_499:289923..291247-

spliced messenger RNA

>EsuBft629_3a-0001 ID=EsuBft629_3a-0001|Name=EsuBft629_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1188bp|location=Sequence derived from alignment at Scaffold_499:289923..291247- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAAACTCACGATCATCGTCAAGCTCCACAAGCTCCACAAGCTCCAG
GCTGTCGTCGATCGAGAAGAATCAGAGGTACGATCTGGAGAGCATCAACA
AGAACCACGCCAACATGCAGAAGAACTACAAGGACATCAGGGAGTCGCAA
GATCGTGTGACCAAGCTCGAGGAGCGCGTTCTGCAGCTGGAGACGATCGT
CTCGTCGCTGAGGTCGTCGGATCCATCGTCGTCATCGTCCCAATCCCAAT
CCCAATCCCAATCGAAGAAGATCGTGTACAAGCCGCGGCCGCGTCCGACC
GAATTTCACTCACCTAAACAGCCGAGCACGAACGAAGAGAAGGTGGCGCA
CATGCAGCAGCTGTCGGCGAAGCTCCAGCTCGATCGCTCGGCGCTGATCG
CCTTCAACAAGAAAAACATGGCGCTACCCGAGAGCGAGAGGCACGTCTGG
GAGAAGAGGCTGAAGAAGAAGGACGGCAGCGTCGTCGTCCAGCGGTTGGA
CAGGATCGTCGACAACAAGAGCCTGGATTGTTTGCTTAGGAACGACGCTA
CGAGGGCCGTGGTCAACAACATGCTGGTCGACAAAGGCGGACCGGAGCGC
AACATGAAGTCGACGATCCGCACAACGTACTGGGTGTTTCTCAGAGACGG
CAAGCTCACCACGATCAGCGAACAGTTCAAGGGCGGCGTCGGGACCGAGT
ACCTGTGGACAGAGGACGCCGCGCTCCGACGGCCGTCCGCCGACTGGATG
AATGACACGAGGCGCCAAATGGATCCGCGCAGGGCCCATATCGACCCTCG
GACCATGGCGCTGTGGGTCCCGAAGAAGAACGACGACGACGGCAACGACG
GCAACGAAGGCGACAACAACGGCGACAACAACGGCGACAACAACGGCGAC
AACAACGACGACAACGAGAGCGGGCGTGTCGATGAACCTGTGCAGAAGGA
TGGTGTTGGCGAGGGTGGTGCAGAGAGTGTAGCACATGGTGCAGAGAGTG
TAGCACAAGGTGCAGAGAGTGCGGAGAGTGTGGAAGACGAGTCCATCGTT
GGTCTCAAGCGCGCTTTGGACGCAGCAGTAGCGGGAGACACGTCTTCGGA
GTCGGAGTCGGAGTCGGAGTCGGAGTCGGAATCAGAGTCGGAGTCAGAGT
CGGAGTCGGACGCACCCAAGAGACCGCGCATTATGTAG

protein sequence of EsuBft629_3a-0001

>EsuBft629_3 ID=EsuBft629_3|Name=EsuBft629_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=395bp
MSNSRSSSSSTSSTSSRLSSIEKNQRYDLESINKNHANMQKNYKDIRESQ
DRVTKLEERVLQLETIVSSLRSSDPSSSSSQSQSQSQSKKIVYKPRPRPT
EFHSPKQPSTNEEKVAHMQQLSAKLQLDRSALIAFNKKNMALPESERHVW
EKRLKKKDGSVVVQRLDRIVDNKSLDCLLRNDATRAVVNNMLVDKGGPER
NMKSTIRTTYWVFLRDGKLTTISEQFKGGVGTEYLWTEDAALRRPSADWM
NDTRRQMDPRRAHIDPRTMALWVPKKNDDDGNDGNEGDNNGDNNGDNNGD
NNDDNESGRVDEPVQKDGVGEGGAESVAHGAESVAQGAESAESVEDESIV
GLKRALDAAVAGDTSSESESESESESESESESESESDAPKRPRIM

mRNA from alignment at Scaffold_499:289923..291247-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft629_3a-0001 ID=EsuBft629_3a-0001|Name=EsuBft629_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1325bp|location=Sequence derived from alignment at Scaffold_499:289923..291247- (Ectocarpus subulatus male Bft15b)
ATGTCAAACTCACGATCATCGTCAAGCTCCACAAGCTCCACAAGCTCCAG
GCTGTCGTCGATCGAGAAGAATCAGAGGTACGATCTGGAGAGCATCAACA
AGAACCACGCCAACATGCAGAAGAACTACAAGGACATCAGGGAGTCGCAA
GATCGTGTGACCAAGCTCGAGGAGCGCGTTCTGCAGCTGGAGACGATCGT
CTCGTCGCTGAGGTCGTCGGATCCATCGTCGTCATCGTCCCAATCCCAAT
CCCAATCCCAATCGAAGAAGATCGTGTACAAGCCGCGGCCGCGTCCGACC
GAATTTCACTCACCTAAACAGCCGAGCACGAACGAAGAGAAGGTGGCGCA
CATGCAGCAGCTGTCGGCGAAGCTCCAGCTCGATCGCTCGGCGCTGATCG
CCTTCAACAAGAAAAACATGGCGCTACCCGAGAGCGAGAGGCACGTCTGG
GAGAAGAGGCTGAAGAAGAAGGACGGCAGCGTCGTCGTCCAGCGGTTGGA
CAGGATCGTCGACAACAAGAGCCTGGATTGTTTGCTTAGGAACGACGCTA
CGAGGGCCGTGGTCAACAACATGCTGGTCGACAAAGGCGGACCGGAGCGC
AACATGAAGTCGACGATCCGCACAACGTACTGGGTGTTTCTCAGAGACGG
CAAGCTCACCACGATCAGCGAACAGTTCAAGGGCGGCGTCGGGACCGAGT
ACCTGTGGACAGAGGACGCCGCGCTCCGACGGCCGTCCGCCGACTGGATG
AATGACACGAGGCGCCAAATGGATCCGCGCAGGGCCCATATCGACCCTCG
GACCATGGCGCTGTGGGTCCCGAAGAAGAAGTCTGTGAAACGAAGAAGGT
GGGGGAGGGAGCCGTGCCCCAGGAGGGGGGTGGCGACGGAGACGACAGCG
GCAGTTCGAGTGACAGCTCGAGTGACAGCTCGAGTGACAGCTCGAGTGAC
AGCTCGAGTGACAGCAGCGACGACGACGGCAACGACGGCAACGAAGGCGA
CAACAACGGCGACAACAACGGCGACAACAACGGCGACAACAACGACGACA
ACGAGAGCGGGCGTGTCGATGAACCTGTGCAGAAGGATGGTGTTGGCGAG
GGTGGTGCAGAGAGTGTAGCACATGGTGCAGAGAGTGTAGCACAAGGTGC
AGAGAGTGCGGAGAGTGTGGAAGACGAGTCCATCGTTGGTCTCAAGCGCG
CTTTGGACGCAGCAGTAGCGGGAGACACGTCTTCGGAGTCGGAGTCGGAG
TCGGAGTCGGAGTCGGAATCAGAGTCGGAGTCAGAGTCGGAGTCGGACGC
ACCCAAGAGACCGCGCATTATGTAG

Coding sequence (CDS) from alignment at Scaffold_499:289923..291247-

>EsuBft629_3a-0001 ID=EsuBft629_3a-0001|Name=EsuBft629_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1188bp|location=Sequence derived from alignment at Scaffold_499:289923..291247- (Ectocarpus subulatus male Bft15b)
ATGTCAAACTCACGATCATCGTCAAGCTCCACAAGCTCCACAAGCTCCAG
GCTGTCGTCGATCGAGAAGAATCAGAGGTACGATCTGGAGAGCATCAACA
AGAACCACGCCAACATGCAGAAGAACTACAAGGACATCAGGGAGTCGCAA
GATCGTGTGACCAAGCTCGAGGAGCGCGTTCTGCAGCTGGAGACGATCGT
CTCGTCGCTGAGGTCGTCGGATCCATCGTCGTCATCGTCCCAATCCCAAT
CCCAATCCCAATCGAAGAAGATCGTGTACAAGCCGCGGCCGCGTCCGACC
GAATTTCACTCACCTAAACAGCCGAGCACGAACGAAGAGAAGGTGGCGCA
CATGCAGCAGCTGTCGGCGAAGCTCCAGCTCGATCGCTCGGCGCTGATCG
CCTTCAACAAGAAAAACATGGCGCTACCCGAGAGCGAGAGGCACGTCTGG
GAGAAGAGGCTGAAGAAGAAGGACGGCAGCGTCGTCGTCCAGCGGTTGGA
CAGGATCGTCGACAACAAGAGCCTGGATTGTTTGCTTAGGAACGACGCTA
CGAGGGCCGTGGTCAACAACATGCTGGTCGACAAAGGCGGACCGGAGCGC
AACATGAAGTCGACGATCCGCACAACGTACTGGGTGTTTCTCAGAGACGG
CAAGCTCACCACGATCAGCGAACAGTTCAAGGGCGGCGTCGGGACCGAGT
ACCTGTGGACAGAGGACGCCGCGCTCCGACGGCCGTCCGCCGACTGGATG
AATGACACGAGGCGCCAAATGGATCCGCGCAGGGCCCATATCGACCCTCG
GACCATGGCGCTGTGGGTCCCGAAGAAGAACGACGACGACGGCAACGACG
GCAACGAAGGCGACAACAACGGCGACAACAACGGCGACAACAACGGCGAC
AACAACGACGACAACGAGAGCGGGCGTGTCGATGAACCTGTGCAGAAGGA
TGGTGTTGGCGAGGGTGGTGCAGAGAGTGTAGCACATGGTGCAGAGAGTG
TAGCACAAGGTGCAGAGAGTGCGGAGAGTGTGGAAGACGAGTCCATCGTT
GGTCTCAAGCGCGCTTTGGACGCAGCAGTAGCGGGAGACACGTCTTCGGA
GTCGGAGTCGGAGTCGGAGTCGGAGTCGGAATCAGAGTCGGAGTCAGAGT
CGGAGTCGGACGCACCCAAGAGACCGCGCATTATGTAG