EsuBft629_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft629_2a-0001
Unique Name	EsuBft629_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_499	contig	Scaffold_499:292300..293869 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft629_2
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	133
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft629_2a	EsuBft629_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_499 292300..293869 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft629_2a-0001-exon	EsuBft629_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_499 292300..293450 +
EsuBft629_2a-0001-exon	agat-exon-70080	Ectocarpus subulatus male Bft15b	exon	Scaffold_499 293683..293869 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft629_2a-0001-cds	EsuBft629_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_499 292300..293450 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft629_2a-0001	EsuBft629_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_499 292300..293869 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_499:292300..293869+
coding sequence from alignment at Scaffold_499:292300..293869+

spliced messenger RNA

>EsuBft629_2a-0001 ID=EsuBft629_2a-0001|Name=EsuBft629_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1338bp|location=Sequence derived from alignment at Scaffold_499:292300..293869+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGACCTCCAAGCTCTTTATCACAATCTCTATTTGCTCGGAGGCCAT
ACGGTACCTCCGCGCACACAAGCAGGAAGAGTGGAAAACGTCGTACGACC
ATGTGATGCAGTCTCTGCCCGCCGAGGACAAGACGGAACACGTGCACACG
AACCTGACCAAGGCGTGCATGGAGTTCATGAAAGCCGAGGTCTTCGACAA
GGACACGTCCGATCGCAAGGTTATGGTCGCCATCCGAGTTGCAGTGTCGA
TCGCGATCGGCGAAGCGCAGCGCGGACTGGCCAAAGAAATTTGTGATCGC
CTCCGGAAGGTGGAAGACTTCAACCGGTACCTGATGACGGAGGTGTTCAA
TCTCTCCATCGTCACGGACAGAGTGTGCACTCTCCTGGACGACGTCATAA
TACACCAGAAGAAGCACGTCAGCAAAGATATCCAACAAGAACTATGCGTG
GAATTCGTTGTCCTATTCTTTGGTATTGTGGAAAGCATCCTTCGCCGCGG
CCACTGCCACACATTCAGCGAACTGGGATACGCGACGAGCGCAACGCCGT
CCGACATGGGCAATGCTCGCAACATTCTGGAGAAGCACGTGTCCGCGATT
GCCGCCATGTGTGGACCGTGCTTCATACTCAAGGCTCTCAAGGAAAAGCG
CCCGAGACTCAACCTCTTGCCGGCGAACGGCACTCTTCCGCAAACGACGA
CTCTAGGAACAGATCACGTGGACTTCGCCAGCTGCGGCATTTATGTTTTG
AAATCGTCTCTCTCGCACGATTCGAAAGAGACCAAGACCTTTCTGGACAT
CATCTTCGCCACCATGTCGCTTTCCCACAAGACGCCCGCCGACACATTCG
ACGACATCAGGCTGGACACGACCAGGACGTTTTTCTTGGACAAGGTGCTG
GACAGGACCGATGCCGACCAACTTGTGAAAAAAATGGAGGACCCCAAGGT
CATGTTCAAAGAAAATCTTCTTCTGAAGGATAAGGTCAAGAACCTCGCCC
AAGAGCTGAGCTCTACCGGCGCCGAACTCGTCGACACAAAGAGTCTCCTC
CAACAAGAAAAAGGTGTGCGTTCGGAACTGGAAGCCGACAAGAAGAGCCT
GCTGGCGTCGAATCAGAGATCCATGTTCAGAGCTGACATGGCGGAGAGCA
GCGCCGACAAAAAACGCGTCGTCGACCTGTACGAGTCAGGAAGGACCAAG
CTCGACGAGGCCAACACCGAGATCAAGAAGCTGAAGGACACCATCGACGG
CAAGAAGCCCCGCGTCGATCGTCCAAAGATATGCCCTCACCAACTCGCCG
ACTCCATGTACTTCGGGAGTGGATATCGGACGCCCTAG

protein sequence of EsuBft629_2a-0001

>EsuBft629_2 ID=EsuBft629_2|Name=EsuBft629_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=445bp
MTTSKLFITISICSEAIRYLRAHKQEEWKTSYDHVMQSLPAEDKTEHVHT
NLTKACMEFMKAEVFDKDTSDRKVMVAIRVAVSIAIGEAQRGLAKEICDR
LRKVEDFNRYLMTEVFNLSIVTDRVCTLLDDVIIHQKKHVSKDIQQELCV
EFVVLFFGIVESILRRGHCHTFSELGYATSATPSDMGNARNILEKHVSAI
AAMCGPCFILKALKEKRPRLNLLPANGTLPQTTTLGTDHVDFASCGIYVL
KSSLSHDSKETKTFLDIIFATMSLSHKTPADTFDDIRLDTTRTFFLDKVL
DRTDADQLVKKMEDPKVMFKENLLLKDKVKNLAQELSSTGAELVDTKSLL
QQEKGVRSELEADKKSLLASNQRSMFRADMAESSADKKRVVDLYESGRTK
LDEANTEIKKLKDTIDGKKPRVDRPKICPHQLADSMYFGSGYRTP

mRNA from alignment at Scaffold_499:292300..293869+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft629_2a-0001 ID=EsuBft629_2a-0001|Name=EsuBft629_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1570bp|location=Sequence derived from alignment at Scaffold_499:292300..293869+ (Ectocarpus subulatus male Bft15b)
ATGACGACCTCCAAGCTCTTTATCACAATCTCTATTTGCTCGGAGGCCAT
ACGGTACCTCCGCGCACACAAGCAGGAAGAGTGGAAAACGTCGTACGACC
ATGTGATGCAGTCTCTGCCCGCCGAGGACAAGACGGAACACGTGCACACG
AACCTGACCAAGGCGTGCATGGAGTTCATGAAAGCCGAGGTCTTCGACAA
GGACACGTCCGATCGCAAGGTTATGGTCGCCATCCGAGTTGCAGTGTCGA
TCGCGATCGGCGAAGCGCAGCGCGGACTGGCCAAAGAAATTTGTGATCGC
CTCCGGAAGGTGGAAGACTTCAACCGGTACCTGATGACGGAGGTGTTCAA
TCTCTCCATCGTCACGGACAGAGTGTGCACTCTCCTGGACGACGTCATAA
TACACCAGAAGAAGCACGTCAGCAAAGATATCCAACAAGAACTATGCGTG
GAATTCGTTGTCCTATTCTTTGGTATTGTGGAAAGCATCCTTCGCCGCGG
CCACTGCCACACATTCAGCGAACTGGGATACGCGACGAGCGCAACGCCGT
CCGACATGGGCAATGCTCGCAACATTCTGGAGAAGCACGTGTCCGCGATT
GCCGCCATGTGTGGACCGTGCTTCATACTCAAGGCTCTCAAGGAAAAGCG
CCCGAGACTCAACCTCTTGCCGGCGAACGGCACTCTTCCGCAAACGACGA
CTCTAGGAACAGATCACGTGGACTTCGCCAGCTGCGGCATTTATGTTTTG
AAATCGTCTCTCTCGCACGATTCGAAAGAGACCAAGACCTTTCTGGACAT
CATCTTCGCCACCATGTCGCTTTCCCACAAGACGCCCGCCGACACATTCG
ACGACATCAGGCTGGACACGACCAGGACGTTTTTCTTGGACAAGGTGCTG
GACAGGACCGATGCCGACCAACTTGTGAAAAAAATGGAGGACCCCAAGGT
CATGTTCAAAGAAAATCTTCTTCTGAAGGATAAGGTCAAGAACCTCGCCC
AAGAGCTGAGCTCTACCGGCGCCGAACTCGTCGACACAAAGAGTCTCCTC
CAACAAGAAAAAGGTGTGCGTTCGGAACTGGAAGCCGACAAGAAGAGCCT
GCTGGCGTCGAATCAGAGATCCATGTTCAGAGCTGACATGGCGGAGAGCA
GGTTGGACAGCGGGCACAAGGATATCACGTCCCGGCTGGAACAAACCGTT
CACGAGAACGACCGCCTGAACACGCTTTGTGCCGAACAAAAGAAAAAATA
TGCCTCCGTCGTCGGAGAAAAGAAGCGCTCGCCTGAACACGCTTTGTGCC
GAACAAAAGAAAAAATATGCCTCCGTCGTCGGAGAAAAGAAGCGCACTCG
TGACATGTACGAGGATCGGCTCGCCCAGGCCAGCGCCGACAAAAAACGCG
TCGTCGACCTGTACGAGTCAGGAAGGACCAAGCTCGACGAGGCCAACACC
GAGATCAAGAAGCTGAAGGACACCATCGACGGCAAGAAGCCCCGCGTCGA
TCGTCCAAAGATATGCCCTCACCAACTCGCCGACTCCATGTACTTCGGGA
GTGGATATCGGACGCCCTAG

Coding sequence (CDS) from alignment at Scaffold_499:292300..293869+

>EsuBft629_2a-0001 ID=EsuBft629_2a-0001|Name=EsuBft629_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1338bp|location=Sequence derived from alignment at Scaffold_499:292300..293869+ (Ectocarpus subulatus male Bft15b)
ATGACGACCTCCAAGCTCTTTATCACAATCTCTATTTGCTCGGAGGCCAT
ACGGTACCTCCGCGCACACAAGCAGGAAGAGTGGAAAACGTCGTACGACC
ATGTGATGCAGTCTCTGCCCGCCGAGGACAAGACGGAACACGTGCACACG
AACCTGACCAAGGCGTGCATGGAGTTCATGAAAGCCGAGGTCTTCGACAA
GGACACGTCCGATCGCAAGGTTATGGTCGCCATCCGAGTTGCAGTGTCGA
TCGCGATCGGCGAAGCGCAGCGCGGACTGGCCAAAGAAATTTGTGATCGC
CTCCGGAAGGTGGAAGACTTCAACCGGTACCTGATGACGGAGGTGTTCAA
TCTCTCCATCGTCACGGACAGAGTGTGCACTCTCCTGGACGACGTCATAA
TACACCAGAAGAAGCACGTCAGCAAAGATATCCAACAAGAACTATGCGTG
GAATTCGTTGTCCTATTCTTTGGTATTGTGGAAAGCATCCTTCGCCGCGG
CCACTGCCACACATTCAGCGAACTGGGATACGCGACGAGCGCAACGCCGT
CCGACATGGGCAATGCTCGCAACATTCTGGAGAAGCACGTGTCCGCGATT
GCCGCCATGTGTGGACCGTGCTTCATACTCAAGGCTCTCAAGGAAAAGCG
CCCGAGACTCAACCTCTTGCCGGCGAACGGCACTCTTCCGCAAACGACGA
CTCTAGGAACAGATCACGTGGACTTCGCCAGCTGCGGCATTTATGTTTTG
AAATCGTCTCTCTCGCACGATTCGAAAGAGACCAAGACCTTTCTGGACAT
CATCTTCGCCACCATGTCGCTTTCCCACAAGACGCCCGCCGACACATTCG
ACGACATCAGGCTGGACACGACCAGGACGTTTTTCTTGGACAAGGTGCTG
GACAGGACCGATGCCGACCAACTTGTGAAAAAAATGGAGGACCCCAAGGT
CATGTTCAAAGAAAATCTTCTTCTGAAGGATAAGGTCAAGAACCTCGCCC
AAGAGCTGAGCTCTACCGGCGCCGAACTCGTCGACACAAAGAGTCTCCTC
CAACAAGAAAAAGGTGTGCGTTCGGAACTGGAAGCCGACAAGAAGAGCCT
GCTGGCGTCGAATCAGAGATCCATGTTCAGAGCTGACATGGCGGAGAGCA
GCGCCGACAAAAAACGCGTCGTCGACCTGTACGAGTCAGGAAGGACCAAG
CTCGACGAGGCCAACACCGAGATCAAGAAGCTGAAGGACACCATCGACGG
CAAGAAGCCCCGCGTCGATCGTCCAAAGATATGCCCTCACCAACTCGCCG
ACTCCATGTACTTCGGGAGTGGATATCGGACGCCCTAG