EsuBft629_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft629_12a-0001
Unique NameEsuBft629_12a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_499contigScaffold_499:209456..209872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog7070.TC009115-PA
ProteomeIdEsuBft629_12
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon1
Max annot lvl33208|Metazoa
Length417
Hectar predicted targeting categoryother localisation
Evalue7.12e-25
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BGB6@33208|Metazoa,3D5G4@33213|Bilateria,41ZUZ@6656|Arthropoda,3SKEY@50557|Insecta
Date last modified2016-06-14
Date creation2016-06-14
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0043170
GO0003824
GO0044238
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft629_12aEsuBft629_12aEctocarpus subulatus male Bft15bgeneScaffold_499 209456..209872 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft629_12a-0001-exonEsuBft629_12a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_499 209456..209872 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft629_12a-0001-cdsEsuBft629_12a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_499 209456..209872 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft629_12a-0001EsuBft629_12Ectocarpus subulatus male Bft15bpolypeptideScaffold_499 209456..209872 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft629_12a-0001 ID=EsuBft629_12a-0001|Name=EsuBft629_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=417bp|location=Sequence derived from alignment at Scaffold_499:209456..209872+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGGGATTGCCGTAACTCTAGGAGGTACGGCTGTGAGCCACACTAG
CAAGTCGCAACGTGTAGTGGCTCTGTCGACCACGGAAGCCGAATATATCG
CAGCCGGGGAGGGTGTCAAGGAGGCTCTATTTGTGCGTGCGGTGTTATCG
TTTGTAGCGCCCGAGACGAGTTGGGCTAGCATCCAGGTCCGCGAGGACAA
TCAGGGGGCCATGACGTTGGTGCAGAACCCCCTCAGTTCCGCGAGGAGCA
AGCACATCGACGTGCGCTTCCACTTCATTCGCGAGCTGTTCAAGTCGGGT
AGGATCTCTGTAGAGTACGTCTCGACTGACGAGCAGCATGCCGACCTGCT
CACCAAAGCGCTGTGTCGGGTCAAACTAGAGTACCACCGGAAGGCTCTCA
TGAATCTGCCGGAGTAG
back to top

protein sequence of EsuBft629_12a-0001

>EsuBft629_12 ID=EsuBft629_12|Name=EsuBft629_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=138bp
MSGIAVTLGGTAVSHTSKSQRVVALSTTEAEYIAAGEGVKEALFVRAVLS
FVAPETSWASIQVREDNQGAMTLVQNPLSSARSKHIDVRFHFIRELFKSG
RISVEYVSTDEQHADLLTKALCRVKLEYHRKALMNLPE
back to top

mRNA from alignment at Scaffold_499:209456..209872+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft629_12a-0001 ID=EsuBft629_12a-0001|Name=EsuBft629_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=417bp|location=Sequence derived from alignment at Scaffold_499:209456..209872+ (Ectocarpus subulatus male Bft15b)
ATGTCGGGGATTGCCGTAACTCTAGGAGGTACGGCTGTGAGCCACACTAG
CAAGTCGCAACGTGTAGTGGCTCTGTCGACCACGGAAGCCGAATATATCG
CAGCCGGGGAGGGTGTCAAGGAGGCTCTATTTGTGCGTGCGGTGTTATCG
TTTGTAGCGCCCGAGACGAGTTGGGCTAGCATCCAGGTCCGCGAGGACAA
TCAGGGGGCCATGACGTTGGTGCAGAACCCCCTCAGTTCCGCGAGGAGCA
AGCACATCGACGTGCGCTTCCACTTCATTCGCGAGCTGTTCAAGTCGGGT
AGGATCTCTGTAGAGTACGTCTCGACTGACGAGCAGCATGCCGACCTGCT
CACCAAAGCGCTGTGTCGGGTCAAACTAGAGTACCACCGGAAGGCTCTCA
TGAATCTGCCGGAGTAG
back to top

Coding sequence (CDS) from alignment at Scaffold_499:209456..209872+

>EsuBft629_12a-0001 ID=EsuBft629_12a-0001|Name=EsuBft629_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=417bp|location=Sequence derived from alignment at Scaffold_499:209456..209872+ (Ectocarpus subulatus male Bft15b)
ATGTCGGGGATTGCCGTAACTCTAGGAGGTACGGCTGTGAGCCACACTAG
CAAGTCGCAACGTGTAGTGGCTCTGTCGACCACGGAAGCCGAATATATCG
CAGCCGGGGAGGGTGTCAAGGAGGCTCTATTTGTGCGTGCGGTGTTATCG
TTTGTAGCGCCCGAGACGAGTTGGGCTAGCATCCAGGTCCGCGAGGACAA
TCAGGGGGCCATGACGTTGGTGCAGAACCCCCTCAGTTCCGCGAGGAGCA
AGCACATCGACGTGCGCTTCCACTTCATTCGCGAGCTGTTCAAGTCGGGT
AGGATCTCTGTAGAGTACGTCTCGACTGACGAGCAGCATGCCGACCTGCT
CACCAAAGCGCTGTGTCGGGTCAAACTAGAGTACCACCGGAAGGCTCTCA
TGAATCTGCCGGAGTAG
back to top