EsuBft629_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft629_10a-0001
Unique Name	EsuBft629_10a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_499	contig	Scaffold_499:228080..229113 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft629_10
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	103
Hectar predicted targeting category	no signal peptide or anchor
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft629_10a	EsuBft629_10a	Ectocarpus subulatus male Bft15b	gene	Scaffold_499 228080..229113 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft629_10a-0001-exon	EsuBft629_10a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_499 228080..229113 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft629_10a-0001-cds	EsuBft629_10a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_499 228080..228256 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft629_10a-0001-exon	agat-three_prime_utr-19406	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_499 228257..229113 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft629_10a-0001	EsuBft629_10	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_499 228080..228256 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_499:228080..229113+
coding sequence from alignment at Scaffold_499:228080..229113+

spliced messenger RNA

>EsuBft629_10a-0001 ID=EsuBft629_10a-0001|Name=EsuBft629_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1034bp|location=Sequence derived from alignment at Scaffold_499:228080..229113+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCAAAAATGCGACTGAAAAGCATCGACTGATCCACACATTCACCTA
CGCGCGACATCTTCGCAACCAAAAGCTGTGCATGAACCTCCCGACAACCG
CATGTTGCCGCGGAGGCGCCTCCATATCTCTGGTGTCCGCCTCGAGGGTG
GCCCAAGCCTCTTCGATGCGATCCTGACGTGTTTGCATTCAATGCCGTTG
GCGGCTCGCTTGGCCCTACCGTACTCTACCTCGACCGACAGACTCAACCC
CTCCTCTTACTTCTCCTGACTTGCGCCTGCTTACCCCGCTCCCACTCGGG
CGGAAAGCTGGAATAGCGAATTCTTAGTTCTTCTCCTCGTGCGTGTTGAA
GAGTCAAGAGTGAGCACGTGTACCAGTTTGTAATCACCGCCTGTCCAGCT
TGCGTTGGTTCATACCAGTCAGGAACTGCCACTTCGCTGAAACGTAGCTC
CGCATTAGGCGAGCTGCAGTGATTTAGAAGACGAATCACCCTACTTCCCA
TGTCTTCCAGGCACCCCATCAAGTTGCCTCGGAAAATAGCACCTGGGTCG
ATGTACACTACCCCGCTCTTATCAGCATGCATCACGCGATAGGTGCAGTC
GTATTTTTCTATCCGAAAACAATCGTTGAATTCGGAGCTAGGCAACATCG
ATGTGTGCACTGTTTTGCCTTTGCGCCCGCCTCGCTTGAGAACGCCCCTT
GGCATTCAATCTGGCTTGGCCTCTCGTCCAATTCAAAATGCTCCTCTAGC
CACACAAAGGGCACCTCATTATGCATAGATCGAAAGTCAAGGCCGCCATT
TCTCTCGGTTGATCCTATTCTTGAGCTTTCTCCCTACAGCGGCGTGCCAA
CCTCACTCGTTGGGCCTGGATTGGTACTTCTCATTCTCCCTCAAAGCACG
TTCGATGCCAGCCTTTACTTCACCTAGCACCTTTTGTAGCTTCTCGGTTG
CCTGCCAACCAAAATATACACACAAGGGGGTTAACTCGCTCCATGATGCC
GCCATGTGCTACTCTGTCTATGTAGGGGACGAGC

protein sequence of EsuBft629_10a-0001

>EsuBft629_10 ID=EsuBft629_10|Name=EsuBft629_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=58bp
MCKNATEKHRLIHTFTYARHLRNQKLCMNLPTTACCRGGASISLVSASRV
AQASSMRS

mRNA from alignment at Scaffold_499:228080..229113+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft629_10a-0001 ID=EsuBft629_10a-0001|Name=EsuBft629_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1034bp|location=Sequence derived from alignment at Scaffold_499:228080..229113+ (Ectocarpus subulatus male Bft15b)
ATGTGCAAAAATGCGACTGAAAAGCATCGACTGATCCACACATTCACCTA
CGCGCGACATCTTCGCAACCAAAAGCTGTGCATGAACCTCCCGACAACCG
CATGTTGCCGCGGAGGCGCCTCCATATCTCTGGTGTCCGCCTCGAGGGTG
GCCCAAGCCTCTTCGATGCGATCCTGACGTGTTTGCATTCAATGCCGTTG
GCGGCTCGCTTGGCCCTACCGTACTCTACCTCGACCGACAGACTCAACCC
CTCCTCTTACTTCTCCTGACTTGCGCCTGCTTACCCCGCTCCCACTCGGG
CGGAAAGCTGGAATAGCGAATTCTTAGTTCTTCTCCTCGTGCGTGTTGAA
GAGTCAAGAGTGAGCACGTGTACCAGTTTGTAATCACCGCCTGTCCAGCT
TGCGTTGGTTCATACCAGTCAGGAACTGCCACTTCGCTGAAACGTAGCTC
CGCATTAGGCGAGCTGCAGTGATTTAGAAGACGAATCACCCTACTTCCCA
TGTCTTCCAGGCACCCCATCAAGTTGCCTCGGAAAATAGCACCTGGGTCG
ATGTACACTACCCCGCTCTTATCAGCATGCATCACGCGATAGGTGCAGTC
GTATTTTTCTATCCGAAAACAATCGTTGAATTCGGAGCTAGGCAACATCG
ATGTGTGCACTGTTTTGCCTTTGCGCCCGCCTCGCTTGAGAACGCCCCTT
GGCATTCAATCTGGCTTGGCCTCTCGTCCAATTCAAAATGCTCCTCTAGC
CACACAAAGGGCACCTCATTATGCATAGATCGAAAGTCAAGGCCGCCATT
TCTCTCGGTTGATCCTATTCTTGAGCTTTCTCCCTACAGCGGCGTGCCAA
CCTCACTCGTTGGGCCTGGATTGGTACTTCTCATTCTCCCTCAAAGCACG
TTCGATGCCAGCCTTTACTTCACCTAGCACCTTTTGTAGCTTCTCGGTTG
CCTGCCAACCAAAATATACACACAAGGGGGTTAACTCGCTCCATGATGCC
GCCATGTGCTACTCTGTCTATGTAGGGGACGAGC

Coding sequence (CDS) from alignment at Scaffold_499:228080..229113+

>EsuBft629_10a-0001 ID=EsuBft629_10a-0001|Name=EsuBft629_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=177bp|location=Sequence derived from alignment at Scaffold_499:228080..229113+ (Ectocarpus subulatus male Bft15b)
ATGTGCAAAAATGCGACTGAAAAGCATCGACTGATCCACACATTCACCTA
CGCGCGACATCTTCGCAACCAAAAGCTGTGCATGAACCTCCCGACAACCG
CATGTTGCCGCGGAGGCGCCTCCATATCTCTGGTGTCCGCCTCGAGGGTG
GCCCAAGCCTCTTCGATGCGATCCTGA