EsuBft613_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft613_8a-0001
Unique NameEsuBft613_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_119contigScaffold_119:74168..76546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft613_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length150
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_003760.1
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft613_8aEsuBft613_8aEctocarpus subulatus male Bft15bgeneScaffold_119 74168..76546 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft613_8a-0001EsuBft613_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_119 74326..75988 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft613_8a-0001-exonagat-exon-107613Ectocarpus subulatus male Bft15bexonScaffold_119 74168..74398 +
EsuBft613_8a-0001-exonagat-exon-107614Ectocarpus subulatus male Bft15bexonScaffold_119 74557..74566 +
EsuBft613_8a-0001-exonagat-exon-107612Ectocarpus subulatus male Bft15bexonScaffold_119 74797..74995 +
EsuBft613_8a-0001-exonEsuBft613_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_119 75482..76546 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft613_8a-0001-exonagat-five_prime_utr-12256Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_119 74168..74325 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft613_8a-0001-cdsEsuBft613_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_119 74326..74398 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft613_8a-0001-exonagat-three_prime_utr-19205Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_119 75989..76546 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft613_8a-0001 ID=EsuBft613_8a-0001|Name=EsuBft613_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1505bp|location=Sequence derived from alignment at Scaffold_119:74168..76546+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTGCAACGTCGACACTGTCATGTGATACGTCGGTACTGTGTACAAGTGCG
GCCATCTATCAGGGAAAAGGACGATGACACGAACAACTTTGGGCGTGCGG
TGACAAAAGACCGTGGAGGGGATTCGAGCCCTTGATATCCCCGCGTCTCA
GGACCCCGATGTTGCCAGGAGGAATGCCATCGACGTTGGGGAGAAGGGAG
GGGGTCAAGAGGTGGGGGTGCTGCGTGCGAGGTCTCAAGGGGCTCCGGGG
CGCCCTCGACAACCACGGCTCGTCGTCGACTGAGCTCGCCGGTGTCATGC
AGCATTCGTCTCCAGCAGAGACAGAGAAGGAACAACACGCCGAGCAGGAC
GCGGAGACACAGCGTATGGCGGCGCGTCGGGACGTTTTCGATTTTGCTGG
AGAGGAACGCAGGACGAGCTGGGCGGACTTAGCTCGCAAGGTATGCTTGG
ACCAGCCCATTCCGTGGGCGAACTTCGATGACTTCCGGGCTGCAGTGCAC
CCTGCCGAAGGGGACGAGAGGCACAGAGGAAAGCCGTTGTTGATTGCTAC
GGGGTGCACCTGCCTCTCCTGGAAGACGAGGCTAGAGAGAAAGCCTTGTC
GACAGTGCTGGTCCTCTACGGGGGGGGAGTCATCTCGGACCTCACGGCGA
AAAATGGTTGTGAGAACCATTCACAGACGCGTGTACGTCGACAAGACGCC
TTACCCTTCTATGCCGTTGGGCCAGCCCATCCCGTGGGGGATCTTCGGCG
AGCTCCGGGAAGCAGTTCGCCCCGTCGTAAGGGACGAGAAGCAGAGGGAA
GTCATGGTTGATTGTTTCGGGAGCGACCTGCTTCGCCTTGTGCACGACGG
GAGTGGTCTCGGACCTCTCGGCGGAAGCGGTAGTGTTGAACACTCACGGG
CGCTTGTACATCCGCAGGGCGTCCTGATCATGCTAACAACCCCTTGATCC
ACTGCCCACAGCAGTTGTTTCTCTGCCTCGTCAAGAGTAAGCAGCGATTG
GTGAGGTTGAATTTTTCCGACAGCGACAGGCAGGCAGGAGTTGCGTACAT
TGCCCTTTGCGAGATTCTGCACCGCTCCATGTCACGATGCGTCATTTCAT
ATGCATCCACGCGCGAGAGAGGTACGACTTCGAAATGATGTTCCTACGAT
TTTGTCAAATTGGTACATGTAGTACGCATTCGTCTGTCGCTGATGCTAGT
CTCACGGTTGCGAATTTGCCCCGAAGTGCGATCTAGGCTCCCCCAGTCGT
TTGTTTGTTTTCGTGTCTTGACTGGATACCTTAGGGTTGTGGTGTACTTT
AGACTCCAAGTGGGAGCAAGAGACTTTCCCTCTGGTCTTCCCTTAACGAT
GAGTGTTAGATTGTTCGTAGTTGAAAAGGCCTTAATGGAAGTTCCGTGGT
CTTCTTTATTGGGTGCCCGACTCCGAGTAACAGCGCGGCGAGGCTGCTCC
TGTTGATGGTAATTGGCATCATACGATGCACATATTATCTGTTCACAAAT
GAATC
back to top

protein sequence of EsuBft613_8a-0001

>EsuBft613_8 ID=EsuBft613_8|Name=EsuBft613_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=262bp
MLPGGMPSTLGRREGVKRWGCCVRGLKGLRGALDNHGSSSTELAGVMQHS
SPAETEKEQHAEQDAETQRMAARRDVFDFAGEERRTSWADLARKVCLDQP
IPWANFDDFRAAVHPAEGDERHRGKPLLIATGCTCLSWKTRLERKPCRQC
WSSTGGESSRTSRRKMVVRTIHRRVYVDKTPYPSMPLGQPIPWGIFGELR
EAVRPVVRDEKQREVMVDCFGSDLLRLVHDGSGLGPLGGSGSVEHSRALV
HPQGVLIMLTTP
back to top

mRNA from alignment at Scaffold_119:74168..76546+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft613_8a-0001 ID=EsuBft613_8a-0001|Name=EsuBft613_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2379bp|location=Sequence derived from alignment at Scaffold_119:74168..76546+ (Ectocarpus subulatus male Bft15b)
TTGCAACGTCGACACTGTCATGTGATACGTCGGTACTGTGTACAAGTGCG
GCCATCTATCAGGGAAAAGGACGATGACACGAACAACTTTGGGCGTGCGG
TGACAAAAGACCGTGGAGGGGATTCGAGCCCTTGATATCCCCGCGTCTCA
GGACCCCGATGTTGCCAGGAGGAATGCCATCGACGTTGGGGAGAAGGGAG
GGGGTCAAGAGGTGGGGGTGCTGCGTGCGAGGTGATAAATCAATGGGTTG
ATGAACGTCTGGTGTCATTTCGTAATCATGTTTCGCCCTCGTTTTACGTT
GGTAAGCAATGACTTTATAATGTTGCTTTTTCCTCTCGGTGTGGTAATGT
TTCGGCGCCTGTGTGGGACAAGCGGAAAATGGATGGTAGGTCTCAAGGGG
TACCAGTAGTCCAGGACAAGAAATCACGGCATGGAGCCAAAATACCGAAT
ATCGACCGCGCGGAGATGTATTGAAATTCTTCTTGCCTGAAACTGGCATG
GATATCATTCCCCACACCCCTCACCCCGCCCCTCAAACACCTGCGGCGTC
TCTCTTCCTCCCCTCTATCAAGGCAGATCCACAAAGCCGAGCTATCGGCT
GTTGGCGCGGCGTCCGGAATTCCCGGCAGGCTCCGGGGCGCCCTCGACAA
CCACGGCTCGTCGTCGACTGAGCTCGCCGGTGTCATGCAGCATTCGTCTC
CAGCAGAGACAGAGAAGGAACAACACGCCGAGCAGGACGCGGAGACACAG
CGTATGGCGGCGCGTCGGGACGTTTTCGATTTTGCTGGAGAGGAACGCAG
GACGAGCTGGGCGGACTTAGCTCGCAAGGTGGGCGAGCTGTTAATTATTG
TCTTCGACTTTCTACTCGTGTGTGGTTGAAGGACTATATTTTTGGTTATT
GGCATTGTTTCCTTCCTGTTCATCACTCCAGTTGTGCTTCATTTGGATGC
AGTGCTGTAAAAGAACCAGCCTTATCGCACTTGCGTCGGTTGTGTGTGAG
CGATGTCCAGTGCATCGGCGCTTGCGTCATTTGTCGTCGAGGGAGATATG
TATGTTTCGATTCTGGTGTATGGGTAACGGTGGCGCAAGACGGTGATATA
CCAGACCGCCTGACAACCAGTCGCCGTACCAGTGGTTCTACTAACTATCT
CCCGGGAATGTTGTAAACAAATAGGTCCATCCCCTTGAGCCATGCATCCC
ATGACCACAGCCCACTCACGAATATATACTCTACGCGCTTCCCGCGGTAC
CGCCGCCGGTGCACGGGGACGCATTTTTTCTCCGACGTTGGCTTCCGCAA
CGAAATACCGTGAGGTATGCTTGGACCAGCCCATTCCGTGGGCGAACTTC
GATGACTTCCGGGCTGCAGTGCACCCTGCCGAAGGGGACGAGAGGCACAG
AGGAAAGCCGTTGTTGATTGCTACGGGGTGCACCTGCCTCTCCTGGAAGA
CGAGGCTAGAGAGAAAGCCTTGTCGACAGTGCTGGTCCTCTACGGGGGGG
GAGTCATCTCGGACCTCACGGCGAAAAATGGTTGTGAGAACCATTCACAG
ACGCGTGTACGTCGACAAGACGCCTTACCCTTCTATGCCGTTGGGCCAGC
CCATCCCGTGGGGGATCTTCGGCGAGCTCCGGGAAGCAGTTCGCCCCGTC
GTAAGGGACGAGAAGCAGAGGGAAGTCATGGTTGATTGTTTCGGGAGCGA
CCTGCTTCGCCTTGTGCACGACGGGAGTGGTCTCGGACCTCTCGGCGGAA
GCGGTAGTGTTGAACACTCACGGGCGCTTGTACATCCGCAGGGCGTCCTG
ATCATGCTAACAACCCCTTGATCCACTGCCCACAGCAGTTGTTTCTCTGC
CTCGTCAAGAGTAAGCAGCGATTGGTGAGGTTGAATTTTTCCGACAGCGA
CAGGCAGGCAGGAGTTGCGTACATTGCCCTTTGCGAGATTCTGCACCGCT
CCATGTCACGATGCGTCATTTCATATGCATCCACGCGCGAGAGAGGTACG
ACTTCGAAATGATGTTCCTACGATTTTGTCAAATTGGTACATGTAGTACG
CATTCGTCTGTCGCTGATGCTAGTCTCACGGTTGCGAATTTGCCCCGAAG
TGCGATCTAGGCTCCCCCAGTCGTTTGTTTGTTTTCGTGTCTTGACTGGA
TACCTTAGGGTTGTGGTGTACTTTAGACTCCAAGTGGGAGCAAGAGACTT
TCCCTCTGGTCTTCCCTTAACGATGAGTGTTAGATTGTTCGTAGTTGAAA
AGGCCTTAATGGAAGTTCCGTGGTCTTCTTTATTGGGTGCCCGACTCCGA
GTAACAGCGCGGCGAGGCTGCTCCTGTTGATGGTAATTGGCATCATACGA
TGCACATATTATCTGTTCACAAATGAATC
back to top

Coding sequence (CDS) from alignment at Scaffold_119:74168..76546+

>EsuBft613_8a-0001 ID=EsuBft613_8a-0001|Name=EsuBft613_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=789bp|location=Sequence derived from alignment at Scaffold_119:74168..76546+ (Ectocarpus subulatus male Bft15b)
ATGTTGCCAGGAGGAATGCCATCGACGTTGGGGAGAAGGGAGGGGGTCAA
GAGGTGGGGGTGCTGCGTGCGAGGTCTCAAGGGGCTCCGGGGCGCCCTCG
ACAACCACGGCTCGTCGTCGACTGAGCTCGCCGGTGTCATGCAGCATTCG
TCTCCAGCAGAGACAGAGAAGGAACAACACGCCGAGCAGGACGCGGAGAC
ACAGCGTATGGCGGCGCGTCGGGACGTTTTCGATTTTGCTGGAGAGGAAC
GCAGGACGAGCTGGGCGGACTTAGCTCGCAAGGTATGCTTGGACCAGCCC
ATTCCGTGGGCGAACTTCGATGACTTCCGGGCTGCAGTGCACCCTGCCGA
AGGGGACGAGAGGCACAGAGGAAAGCCGTTGTTGATTGCTACGGGGTGCA
CCTGCCTCTCCTGGAAGACGAGGCTAGAGAGAAAGCCTTGTCGACAGTGC
TGGTCCTCTACGGGGGGGGAGTCATCTCGGACCTCACGGCGAAAAATGGT
TGTGAGAACCATTCACAGACGCGTGTACGTCGACAAGACGCCTTACCCTT
CTATGCCGTTGGGCCAGCCCATCCCGTGGGGGATCTTCGGCGAGCTCCGG
GAAGCAGTTCGCCCCGTCGTAAGGGACGAGAAGCAGAGGGAAGTCATGGT
TGATTGTTTCGGGAGCGACCTGCTTCGCCTTGTGCACGACGGGAGTGGTC
TCGGACCTCTCGGCGGAAGCGGTAGTGTTGAACACTCACGGGCGCTTGTA
CATCCGCAGGGCGTCCTGATCATGCTAACAACCCCTTGA
back to top