EsuBft613_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft613_6a-0001
Unique Name	EsuBft613_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_119	contig	Scaffold_119:111496..114226 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft613_6
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	273
Hectar predicted targeting category	other localisation
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-15_003810.1
Date last modified	2016-06-15
Date creation	2016-06-15

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft613_6a	EsuBft613_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_119 111496..114226 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft613_6a-0001-exon	EsuBft613_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_119 111496..114226 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft613_6a-0001-exon	agat-three_prime_utr-19203	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_119 111496..113861 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft613_6a-0001-cds	EsuBft613_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_119 113862..114179 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft613_6a-0001-exon	agat-five_prime_utr-12255	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_119 114180..114226 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft613_6a-0001	EsuBft613_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_119 113862..114179 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_119:111496..114226-
coding sequence from alignment at Scaffold_119:111496..114226-

spliced messenger RNA

>EsuBft613_6a-0001 ID=EsuBft613_6a-0001|Name=EsuBft613_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2731bp|location=Sequence derived from alignment at Scaffold_119:111496..114226- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGTTTACGATGTGGAATATCTTCCTCCGACGTACAGCGTAGAGGAGGATG
TCATGGCATTGGAAGACAGGAGAAGAGGCGTTCCGGAGCTCCGGGGGGGA
GGATGTCCTCCCCCCTGTATCGATCGAGAGGCATCGGGCGGGGGGGTGGA
GATGGCCCGGGCGCGGGCGTCATCTGAGATGCAGCGCTGGGGTAGGGCTC
CGGGATGGCCAGCCGGAGAGATATCTGATGCGTGTCAACCAGGGACATTG
CAGGCGGTTTTATTTGTTTTTGTTCCCTTGTGACGTCGGGGGTGGGGGGT
GGGGGGGGGCACCGTGGGCGTCAAGGGCCCCGGGTGCTCCGGGCAGGTCA
CTTACGTACCGGTAGCGAACATTGACCTGGCCATCGCGCCGAGCGTGTCT
ATTTTCGCTGGAGAGATGTTTGTCAGGGGCGTGGTTCTGTCAAGCCCGTC
TGGTCATGATCATATGCATATCTAGTATTAACTATTGTATCACGGGTGTG
ACATGAAGCACTGTCGAGGCCAATTTTATCGTCGAAAGTTGCTGCTGTCA
TCGCCCTCCTCGTCATGGCTCGCCTCGGCGACGGTTCGTTCTTTTTTGCC
CGCTGTATCGTTTGGGCCGTCCCCACGACTTGTGTGCTGTCAGCCGAGTG
AGAGGAAGAACGCCGTTCCTGGGTTTCCTCCCCTGATAATTTGAGGGTAC
GTAAAATCCCTCCGGGGACCTTGTGTGGTGGCTGTTTTGGTCTCTCGTCG
CTTACAGCCCGGTGGTTGTTGCCGACCTGGGTGTGTTGTGGTGAGGGCGG
GTTTCCTGCTGGGCAATGATGGTGCTGGAATAATCTCCTAGCTGACGTGA
TATTCGTGTAACCGGAGAACGCGAGTCGATCGCTTCGGCGGTCGCATCAT
ACGATACGTACAAACTTCGGGCGCATAGTGCTTTATGGTACTCTTATACT
TTATGCGCAACATACATCGGGGGGGAGGGGGGTAGAAGTTGAGTATTCCG
ACTTATTTGGTATACTGGAGCGCCCGCTCATCGGTGTTGGTGTGAGTTTT
CGTATCCGGTGGAGTTGAAGCAATGTTCAGACAGAAAGTACATGCCCATA
ATGTTTTAGATACATGTATCGCCACCACCACGTTGTGGGGCGTTGCCGGA
TAAACACGGGAGCGCCCGTTAAGGTGTGTGGTTGCTCGCTGCCCCACAAG
GCACGGTTGTGATTCGTTTCGGAATATGCACCAGGCATCTTGTCCAGTCC
CAGCCTGCGGGTGAGCTCGTGGCGAACACGTCTTCTCCTTTGGCGGGCGC
CAACATCGTTGTAGGTGTGGGTGTGTCTTTGGCCTCGATACAACGTGTAT
AGTCCCAAGCGGCCGCCACCAGCTAGAGCATAACGGCACCGTGCCCGAAG
AAAGGCAGGTGGTTTTCATTGCTGCAAGTGGGAGGCCGGCAACGGCTGAT
GGGCACCCACTTCTGCACCTCGCCGTTCCCAGTTTCTTTTTCAACGTTCG
TAGATGGTGAAGGGGTAAATGGACACCAACCACTTCTCTGAACAGCTTTC
GGTGCAGTTCTCTTTAGGTTCGGTTTCCCGAACGAAGTAAACAGATGCGG
CAGAAGTGTTCCTGGACCATCCCCAAAGATCCTGGCGCGTTGAGGTTCGG
CCGACGGCATGAAGGATAGTGGCTTTCGCCAAAGGGTTGCCGCTACATGG
GGCGCGTCCGTAAGTTTGAGGTTAAAAGCCCCTGCGGCGCGTGATAAGGG
AGTGCCTGTGTTTGAAAGGTTTTCGGCGCCTTGTAGTTCGTGAAGCTGGC
ATGCATACGTGCTTTGTTTTGGGGGGCGGTGGGGTTAATGTGAGACGATG
CCTGTTCGGCGTGTGTTGTCCTTCATTGTTTTTCACGGGAGGTGCGATGC
CGCACTAGCAGCAGCAGCAGCAGCAGTAACCTGTACGCTTTGACTGACGC
TGCGTTTTTTTTTTTCTCTTTCCAACTTGTTTTGGGTGTCGACTTGTTAG
ATGTCGGGCAGAGGGGTTCTTTGGAGTCGGACGTGCGGGCCTCTTTTTTT
GCAGCCTTTGGCAGTGTTGGTTGATTACGGTGACTGTTCCGTGGTGAAGA
AAGAAGGCGACAGATAGGCGACAGGGGATGAATGCGATACTTCTACTCGA
CAAGAGAGTGGACAGGTCATCATTCATGCTTGTTTGTTGTCCCGATACAG
TAAATAATCCGCTCTTCATTCTTCGTTGTATTCTGGTGTAATGCTTGTAT
GCGCGTGTGTGTGGGTGTTCTTTTTCATCCGATTGATGCTGTATTCTTAT
GCCCGTAATGGCAGAAACAGCGAGCGGTGTGTCTGTGAGTGGAGGAGGAG
CAGACGACCCGGCAGAACGAAGCGCAGGAACATCGTCGTGCTTCGTGATG
GGATGGACAAGTGTAGAAGAACGTGTGCCGGCGCCGTTGTTGCAAGTATG
AAGTGTCTACAAATGAAGGAGTGAATGGATGCGCGTGATTGTTACTATGG
TAGTTATAAATACGTACACGGGCTTCAGTTGATTGAGGCCCCCGGGGGGA
TATTATGATGATAGTTAGCATCATTTATATGCATACAGGGAAAAACTCAT
GGTCCAATATGTCAACAAAAGTACCTGGGTGATTGCGTTTGTACCCGCCT
GGCGGGGGTACCCTGAAGGGTACAGTAGGGTCAATAATGCCATTCGTTAG
TTCTTACGGGAGAAGAATTTATAACCCAGAG

protein sequence of EsuBft613_6a-0001

>EsuBft613_6 ID=EsuBft613_6|Name=EsuBft613_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=105bp
MSWHWKTGEEAFRSSGGEDVLPPVSIERHRAGGWRWPGRGRHLRCSAGVG
LRDGQPERYLMRVNQGHCRRFYLFLFPCDVGGGGWGGAPWASRAPGAPGR
SLTYR

mRNA from alignment at Scaffold_119:111496..114226-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft613_6a-0001 ID=EsuBft613_6a-0001|Name=EsuBft613_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2731bp|location=Sequence derived from alignment at Scaffold_119:111496..114226- (Ectocarpus subulatus male Bft15b)
CGTTTACGATGTGGAATATCTTCCTCCGACGTACAGCGTAGAGGAGGATG
TCATGGCATTGGAAGACAGGAGAAGAGGCGTTCCGGAGCTCCGGGGGGGA
GGATGTCCTCCCCCCTGTATCGATCGAGAGGCATCGGGCGGGGGGGTGGA
GATGGCCCGGGCGCGGGCGTCATCTGAGATGCAGCGCTGGGGTAGGGCTC
CGGGATGGCCAGCCGGAGAGATATCTGATGCGTGTCAACCAGGGACATTG
CAGGCGGTTTTATTTGTTTTTGTTCCCTTGTGACGTCGGGGGTGGGGGGT
GGGGGGGGGCACCGTGGGCGTCAAGGGCCCCGGGTGCTCCGGGCAGGTCA
CTTACGTACCGGTAGCGAACATTGACCTGGCCATCGCGCCGAGCGTGTCT
ATTTTCGCTGGAGAGATGTTTGTCAGGGGCGTGGTTCTGTCAAGCCCGTC
TGGTCATGATCATATGCATATCTAGTATTAACTATTGTATCACGGGTGTG
ACATGAAGCACTGTCGAGGCCAATTTTATCGTCGAAAGTTGCTGCTGTCA
TCGCCCTCCTCGTCATGGCTCGCCTCGGCGACGGTTCGTTCTTTTTTGCC
CGCTGTATCGTTTGGGCCGTCCCCACGACTTGTGTGCTGTCAGCCGAGTG
AGAGGAAGAACGCCGTTCCTGGGTTTCCTCCCCTGATAATTTGAGGGTAC
GTAAAATCCCTCCGGGGACCTTGTGTGGTGGCTGTTTTGGTCTCTCGTCG
CTTACAGCCCGGTGGTTGTTGCCGACCTGGGTGTGTTGTGGTGAGGGCGG
GTTTCCTGCTGGGCAATGATGGTGCTGGAATAATCTCCTAGCTGACGTGA
TATTCGTGTAACCGGAGAACGCGAGTCGATCGCTTCGGCGGTCGCATCAT
ACGATACGTACAAACTTCGGGCGCATAGTGCTTTATGGTACTCTTATACT
TTATGCGCAACATACATCGGGGGGGAGGGGGGTAGAAGTTGAGTATTCCG
ACTTATTTGGTATACTGGAGCGCCCGCTCATCGGTGTTGGTGTGAGTTTT
CGTATCCGGTGGAGTTGAAGCAATGTTCAGACAGAAAGTACATGCCCATA
ATGTTTTAGATACATGTATCGCCACCACCACGTTGTGGGGCGTTGCCGGA
TAAACACGGGAGCGCCCGTTAAGGTGTGTGGTTGCTCGCTGCCCCACAAG
GCACGGTTGTGATTCGTTTCGGAATATGCACCAGGCATCTTGTCCAGTCC
CAGCCTGCGGGTGAGCTCGTGGCGAACACGTCTTCTCCTTTGGCGGGCGC
CAACATCGTTGTAGGTGTGGGTGTGTCTTTGGCCTCGATACAACGTGTAT
AGTCCCAAGCGGCCGCCACCAGCTAGAGCATAACGGCACCGTGCCCGAAG
AAAGGCAGGTGGTTTTCATTGCTGCAAGTGGGAGGCCGGCAACGGCTGAT
GGGCACCCACTTCTGCACCTCGCCGTTCCCAGTTTCTTTTTCAACGTTCG
TAGATGGTGAAGGGGTAAATGGACACCAACCACTTCTCTGAACAGCTTTC
GGTGCAGTTCTCTTTAGGTTCGGTTTCCCGAACGAAGTAAACAGATGCGG
CAGAAGTGTTCCTGGACCATCCCCAAAGATCCTGGCGCGTTGAGGTTCGG
CCGACGGCATGAAGGATAGTGGCTTTCGCCAAAGGGTTGCCGCTACATGG
GGCGCGTCCGTAAGTTTGAGGTTAAAAGCCCCTGCGGCGCGTGATAAGGG
AGTGCCTGTGTTTGAAAGGTTTTCGGCGCCTTGTAGTTCGTGAAGCTGGC
ATGCATACGTGCTTTGTTTTGGGGGGCGGTGGGGTTAATGTGAGACGATG
CCTGTTCGGCGTGTGTTGTCCTTCATTGTTTTTCACGGGAGGTGCGATGC
CGCACTAGCAGCAGCAGCAGCAGCAGTAACCTGTACGCTTTGACTGACGC
TGCGTTTTTTTTTTTCTCTTTCCAACTTGTTTTGGGTGTCGACTTGTTAG
ATGTCGGGCAGAGGGGTTCTTTGGAGTCGGACGTGCGGGCCTCTTTTTTT
GCAGCCTTTGGCAGTGTTGGTTGATTACGGTGACTGTTCCGTGGTGAAGA
AAGAAGGCGACAGATAGGCGACAGGGGATGAATGCGATACTTCTACTCGA
CAAGAGAGTGGACAGGTCATCATTCATGCTTGTTTGTTGTCCCGATACAG
TAAATAATCCGCTCTTCATTCTTCGTTGTATTCTGGTGTAATGCTTGTAT
GCGCGTGTGTGTGGGTGTTCTTTTTCATCCGATTGATGCTGTATTCTTAT
GCCCGTAATGGCAGAAACAGCGAGCGGTGTGTCTGTGAGTGGAGGAGGAG
CAGACGACCCGGCAGAACGAAGCGCAGGAACATCGTCGTGCTTCGTGATG
GGATGGACAAGTGTAGAAGAACGTGTGCCGGCGCCGTTGTTGCAAGTATG
AAGTGTCTACAAATGAAGGAGTGAATGGATGCGCGTGATTGTTACTATGG
TAGTTATAAATACGTACACGGGCTTCAGTTGATTGAGGCCCCCGGGGGGA
TATTATGATGATAGTTAGCATCATTTATATGCATACAGGGAAAAACTCAT
GGTCCAATATGTCAACAAAAGTACCTGGGTGATTGCGTTTGTACCCGCCT
GGCGGGGGTACCCTGAAGGGTACAGTAGGGTCAATAATGCCATTCGTTAG
TTCTTACGGGAGAAGAATTTATAACCCAGAG

Coding sequence (CDS) from alignment at Scaffold_119:111496..114226-

>EsuBft613_6a-0001 ID=EsuBft613_6a-0001|Name=EsuBft613_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=318bp|location=Sequence derived from alignment at Scaffold_119:111496..114226- (Ectocarpus subulatus male Bft15b)
ATGTCATGGCATTGGAAGACAGGAGAAGAGGCGTTCCGGAGCTCCGGGGG
GGAGGATGTCCTCCCCCCTGTATCGATCGAGAGGCATCGGGCGGGGGGGT
GGAGATGGCCCGGGCGCGGGCGTCATCTGAGATGCAGCGCTGGGGTAGGG
CTCCGGGATGGCCAGCCGGAGAGATATCTGATGCGTGTCAACCAGGGACA
TTGCAGGCGGTTTTATTTGTTTTTGTTCCCTTGTGACGTCGGGGGTGGGG
GGTGGGGGGGGGCACCGTGGGCGTCAAGGGCCCCGGGTGCTCCGGGCAGG
TCACTTACGTACCGGTAG