EsuBft613_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft613_5a-0001
Unique Name	EsuBft613_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_119	contig	Scaffold_119:116735..119693 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft613_5
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	295
Date last modified	2016-06-15
Date creation	2016-06-15

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft613_5a	EsuBft613_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_119 116735..119693 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft613_5a-0001-exon	EsuBft613_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_119 116735..119693 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft613_5a-0001-exon	agat-three_prime_utr-19202	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_119 116735..119543 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft613_5a-0001-cds	EsuBft613_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_119 119544..119693 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft613_5a-0001	EsuBft613_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_119 119544..119693 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_119:116735..119693-
coding sequence from alignment at Scaffold_119:116735..119693-

spliced messenger RNA

>EsuBft613_5a-0001 ID=EsuBft613_5a-0001|Name=EsuBft613_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2959bp|location=Sequence derived from alignment at Scaffold_119:116735..119693- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGCGGCGGCGGCGCGAGCGGTGCTTGAGCGAAGCNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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TCTGAGATGCAGCGCTGGGGTAGGGCTCCGGGATGGCCAGCCGGAGAGAT
ATCTGATGCGTGTCAACCAGGGACATTGCAGGCGGTTTTATTTGTTTTTG
TTCCCTTGTGACGTCGGGGGTGGGGGGTGGGGGGGGGCACCGTGGGCGTC
AAGGGCCCCGGGTGCTCCGGGCAGGTCACTTACGTACCGGTAGCGAACAT
TGACCTGGCCATCGCGCCGAGCGTGTCTATTTTCGCTGGAGAGATGTTTG
TCAGGGGCGTGGTTCTGTCAAGCCCGTCTGGTCATGATCATATGCATATC
TAGTATTAACTATTGTATCACGGGTGTGACATGAAGCACTGTCGAGGCCA
ATTTTATCGTCGAAAGTTGCTGCTGTCATCGCCCTCCTCGTCATGGCTCG
CCTCGGCGACGGTTCGTTCTTTTTTGCCCGCTGTATCGTTTGGGCCGTCC
CCACGACTTGTGTGCTGTCAGCCGAGTGAGAGGAAGAACGCCGTTCCTGG
GTTTCCTCCCCTGATAATTTGAGGGTACGTAAAATCCCTCCGGGGACCTT
GTGTGGTGGCTGTTTTGGTCTCTCGTCGCTTACAGCCCGGTGGTTGTTGC
CGACCTGGGTGTGTTGTGGTGAGGGCGGGTTTCCTGCTGGGCAATGATGG
TGCTGGAATAATCTCCTAGCTGACGTGATATTCGTGTAACCGGAGAACGC
GAGTCGATCGCTTCGGCGGTCGCATCATACGATACGTACAAACTTCGGGC
GCATAGTGCTTTATGGTACTCTTATACTTTATGCGCAACATACATCGGGG
GGGAGGGGGGTAGAAGTTGAGTATTCCGACTTATTTGGTATACTGGAGCG
CCCGCTCATCGGTGTTGGTGTGAGTTTTCGTATCCGGTGGAGTTGAAGCA
ATGTTCAGACAGAAAGTACATGCCCATAATGTTTTAGATACATGTATCGC
CACCACCACGTTGTGGGGCGTTGCCGGATAAACACGGGAGCGCCCGTTAA
GGTGTGTGGTTGCTCGCTGCCCCACAAGGCACGGTTGTGATTCGTTTCGG
AATATGCACCAGGCATCTTGTCCAGTCCCAGCCTGCGGGTGAGCTCGTGG
CGAACACGTCTTCTCCTTTGGCGGGCGCCAACATCGTTGTAGGTGTGGGT
GTGTCTTTGGCCTCGATACAACGTGTATAGTCCCAAGCGGCCGCCACCAG
CTAGAGCATAACGGCACCGTGCCCGAAGAAAGGCAGGTGGTTTTCATTGC
TGCAAGTGGGAGGCCGGCAACGGCTGATGGGCACCCACTTCTGCACCTCG
CCGTTCCCAGTTTCTTTTTCAACGTTCGTAGATGGTGAAGGGGTAAATGG
ACACCAACCACTTCTCTGAACAGCTTTCGGTGCAGTTCTCTTTAGGTTCG
GTTTCCCGAACGAAGTAAACAGATGCGGCAGAAGTGTTCCTGGACCATCC
CCAAAGATCCTGGCGCGTTGAGGTTCGGCCGACGGCATGAAGGATAGTGG
CTTTCGCCAAAGGGTTGCCGCTACATGGGGCGCGTCCGTAAGTTTGAGGT
TAAAAGCCCCTGCGGCGCGTGATAAGGGAGTGCCTGTGTTTGAAAGGTTT
TCGGCGCCTTGTAGTTCGTGAAGCTGGCATGCATACGTGCTTTGTTTTGG
GGGGCGGTGGGGTTAATGTGAGACGATGCCTGTTCGGCGTGTGTTGTCCT
TCATTGTTTTTCACGGGAGGTGCGATGCCGCACTAGCAGCAGCAGCAGCA
GCAGTAACCTGTACGCTTTGACTGACGCTGCGTTTTTTTTTTTCTCTTTC
CAACTTGTTTTGGGTGTCGACTTGTTAGATGTCGGGCAGAGGGGTTCTTT
GGAGTCGGACGTGCGGGCCTCTTTTTTTGCAGCCTTTGGCAGTGTTGGTT
GATTACGGTGACTGTTCCGTGGTGAAGAAAGAAGGCGACAGATAGGCGAC
AGGGGATGAATGCGATACTTCTACTCGACAAGAGAGTGGACAGGTCATCA
TTCATGCTTGTTTGTTGTCCCGATACAGTAAATAATCCGCTCTTCATTCT
TCGTTGTATTCTGGTGTAATGCTTGTATGCGCGTGTGTGTGGGTGTTCTT
TTTCATCCGATTGATGCTGTATTCTTATGCCCGTAATGGCAGAAACAGCG
AGCGGTGTGTCTGTGAGTGGAGGAGGAGCAGACGACCCGGCAGAACGAAG
CGCAGGAACATCGTCGTGCTTCGTGATGGGATGGACAAGTGTAGAAGAAC
GTGTGCCGGCGCCGTTGTTGCAAGTATGAAGTGTCTACAAATGAAGGAGT
GAATGGATGCGCGTGATTGTTACTATGGTAGTTATAAATACGTACACGGG
CTTCAGTTGATTGAGGCCCCCGGGGGGATATTATGATGATAGTTAGCATC
ATTTATATGCATACAGGGAAAAACTCATGGTCCAATATGTCAACAAAAGT
ACCTGGGTGATTGCGTTTGTACCCGCCTGGCGGGGGTACCCTGAAGGGTA
CAGTAGGGTCAATAATGCCATTCGTTAGTTCTTACGGGAGAAGAATTTAT
AACCCAGAG

protein sequence of EsuBft613_5a-0001

>EsuBft613_5 ID=EsuBft613_5|Name=EsuBft613_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=50bp
MKAAAARAVLERSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

mRNA from alignment at Scaffold_119:116735..119693-

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft613_5a-0001 ID=EsuBft613_5a-0001|Name=EsuBft613_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2959bp|location=Sequence derived from alignment at Scaffold_119:116735..119693- (Ectocarpus subulatus male Bft15b)
ATGAAGGCGGCGGCGGCGCGAGCGGTGCTTGAGCGAAGCNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TCTGAGATGCAGCGCTGGGGTAGGGCTCCGGGATGGCCAGCCGGAGAGAT
ATCTGATGCGTGTCAACCAGGGACATTGCAGGCGGTTTTATTTGTTTTTG
TTCCCTTGTGACGTCGGGGGTGGGGGGTGGGGGGGGGCACCGTGGGCGTC
AAGGGCCCCGGGTGCTCCGGGCAGGTCACTTACGTACCGGTAGCGAACAT
TGACCTGGCCATCGCGCCGAGCGTGTCTATTTTCGCTGGAGAGATGTTTG
TCAGGGGCGTGGTTCTGTCAAGCCCGTCTGGTCATGATCATATGCATATC
TAGTATTAACTATTGTATCACGGGTGTGACATGAAGCACTGTCGAGGCCA
ATTTTATCGTCGAAAGTTGCTGCTGTCATCGCCCTCCTCGTCATGGCTCG
CCTCGGCGACGGTTCGTTCTTTTTTGCCCGCTGTATCGTTTGGGCCGTCC
CCACGACTTGTGTGCTGTCAGCCGAGTGAGAGGAAGAACGCCGTTCCTGG
GTTTCCTCCCCTGATAATTTGAGGGTACGTAAAATCCCTCCGGGGACCTT
GTGTGGTGGCTGTTTTGGTCTCTCGTCGCTTACAGCCCGGTGGTTGTTGC
CGACCTGGGTGTGTTGTGGTGAGGGCGGGTTTCCTGCTGGGCAATGATGG
TGCTGGAATAATCTCCTAGCTGACGTGATATTCGTGTAACCGGAGAACGC
GAGTCGATCGCTTCGGCGGTCGCATCATACGATACGTACAAACTTCGGGC
GCATAGTGCTTTATGGTACTCTTATACTTTATGCGCAACATACATCGGGG
GGGAGGGGGGTAGAAGTTGAGTATTCCGACTTATTTGGTATACTGGAGCG
CCCGCTCATCGGTGTTGGTGTGAGTTTTCGTATCCGGTGGAGTTGAAGCA
ATGTTCAGACAGAAAGTACATGCCCATAATGTTTTAGATACATGTATCGC
CACCACCACGTTGTGGGGCGTTGCCGGATAAACACGGGAGCGCCCGTTAA
GGTGTGTGGTTGCTCGCTGCCCCACAAGGCACGGTTGTGATTCGTTTCGG
AATATGCACCAGGCATCTTGTCCAGTCCCAGCCTGCGGGTGAGCTCGTGG
CGAACACGTCTTCTCCTTTGGCGGGCGCCAACATCGTTGTAGGTGTGGGT
GTGTCTTTGGCCTCGATACAACGTGTATAGTCCCAAGCGGCCGCCACCAG
CTAGAGCATAACGGCACCGTGCCCGAAGAAAGGCAGGTGGTTTTCATTGC
TGCAAGTGGGAGGCCGGCAACGGCTGATGGGCACCCACTTCTGCACCTCG
CCGTTCCCAGTTTCTTTTTCAACGTTCGTAGATGGTGAAGGGGTAAATGG
ACACCAACCACTTCTCTGAACAGCTTTCGGTGCAGTTCTCTTTAGGTTCG
GTTTCCCGAACGAAGTAAACAGATGCGGCAGAAGTGTTCCTGGACCATCC
CCAAAGATCCTGGCGCGTTGAGGTTCGGCCGACGGCATGAAGGATAGTGG
CTTTCGCCAAAGGGTTGCCGCTACATGGGGCGCGTCCGTAAGTTTGAGGT
TAAAAGCCCCTGCGGCGCGTGATAAGGGAGTGCCTGTGTTTGAAAGGTTT
TCGGCGCCTTGTAGTTCGTGAAGCTGGCATGCATACGTGCTTTGTTTTGG
GGGGCGGTGGGGTTAATGTGAGACGATGCCTGTTCGGCGTGTGTTGTCCT
TCATTGTTTTTCACGGGAGGTGCGATGCCGCACTAGCAGCAGCAGCAGCA
GCAGTAACCTGTACGCTTTGACTGACGCTGCGTTTTTTTTTTTCTCTTTC
CAACTTGTTTTGGGTGTCGACTTGTTAGATGTCGGGCAGAGGGGTTCTTT
GGAGTCGGACGTGCGGGCCTCTTTTTTTGCAGCCTTTGGCAGTGTTGGTT
GATTACGGTGACTGTTCCGTGGTGAAGAAAGAAGGCGACAGATAGGCGAC
AGGGGATGAATGCGATACTTCTACTCGACAAGAGAGTGGACAGGTCATCA
TTCATGCTTGTTTGTTGTCCCGATACAGTAAATAATCCGCTCTTCATTCT
TCGTTGTATTCTGGTGTAATGCTTGTATGCGCGTGTGTGTGGGTGTTCTT
TTTCATCCGATTGATGCTGTATTCTTATGCCCGTAATGGCAGAAACAGCG
AGCGGTGTGTCTGTGAGTGGAGGAGGAGCAGACGACCCGGCAGAACGAAG
CGCAGGAACATCGTCGTGCTTCGTGATGGGATGGACAAGTGTAGAAGAAC
GTGTGCCGGCGCCGTTGTTGCAAGTATGAAGTGTCTACAAATGAAGGAGT
GAATGGATGCGCGTGATTGTTACTATGGTAGTTATAAATACGTACACGGG
CTTCAGTTGATTGAGGCCCCCGGGGGGATATTATGATGATAGTTAGCATC
ATTTATATGCATACAGGGAAAAACTCATGGTCCAATATGTCAACAAAAGT
ACCTGGGTGATTGCGTTTGTACCCGCCTGGCGGGGGTACCCTGAAGGGTA
CAGTAGGGTCAATAATGCCATTCGTTAGTTCTTACGGGAGAAGAATTTAT
AACCCAGAG

Coding sequence (CDS) from alignment at Scaffold_119:116735..119693-

>EsuBft613_5a-0001 ID=EsuBft613_5a-0001|Name=EsuBft613_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=150bp|location=Sequence derived from alignment at Scaffold_119:116735..119693- (Ectocarpus subulatus male Bft15b)
ATGAAGGCGGCGGCGGCGCGAGCGGTGCTTGAGCGAAGCNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN