EsuBft613_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft613_3a-0001
Unique Name	EsuBft613_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_119	contig	Scaffold_119:143880..145920 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7G873
ProteomeId	EsuBft613_3
Protein domains	SSF56672
Protein domains	Coil
Protein domains	PTHR19446
Protein domains	IPR000477
Owner	apollo_admin@sb-roscoff.fr
Note	rna-directed dna polymerase from mobile element jockey os:drosophila funebris gn:jockey\pol pe: [Automatic annotation]
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	2041
Hectar predicted targeting category	other localisation
Evalue	1.27e-232
EggNOG OGs	COG0553@1\|root,COG2940@1\|root,COG5076@1\|root,KOG1075@1\|root,KOG0383@2759\|Eukaryota,KOG0384@2759\|Eukaryota,KOG1075@2759\|Eukaryota,KOG1081@2759\|Eukaryota,KOG1474@2759\|Eukaryota
Date last modified	2016-06-15
Date creation	2016-06-15
KEGG rclass	RC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG ko	ko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG Reaction	R00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathway	ko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG Module	M00089
EC	2.1.1.43,2.3.1.15,3.6.4.12
Description	acetylation-dependent protein binding
COG category	BK
BRITE	ko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036

Cross References

External references for this mRNA


Database	Accession
GO	0006259
EC	3.1
GO	0004518
GO	0016740

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft613_3a	EsuBft613_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_119 143880..145920 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft613_3a-0001-exon	EsuBft613_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_119 143880..145920 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft613_3a-0001-exon	agat-five_prime_utr-12254	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_119 143880..143899 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft613_3a-0001-cds	EsuBft613_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_119 143900..145894 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft613_3a-0001-exon	agat-three_prime_utr-19200	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_119 145895..145920 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft613_3a-0001	EsuBft613_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_119 143900..145894 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_119:143880..145920+
coding sequence from alignment at Scaffold_119:143880..145920+

spliced messenger RNA

>EsuBft613_3a-0001 ID=EsuBft613_3a-0001|Name=EsuBft613_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2041bp|location=Sequence derived from alignment at Scaffold_119:143880..145920+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGATAGTCGACGAGTTCATGAATTTTGGGGGGAAGGGGACGATCCGA
CTGATGGTACTGCTGTACAATTGGGTGTGGAAAAACGAGTACACGCCAAG
TACATGGAGGGAAGGGGCGGTTGTGAACTTGTTAAAGAAGGGAGACAAGA
CTGACCCAGGAAACTACAGAGGGATCACACTGTTACACACAGTAGGAAAA
GTGTTCTGTAAGCTGCTGAATGATAGGATAGTGGGAGTATTGGAGAAGGA
ACATAGCATTAGTGAGGGCCAGGCAGGTTTCCGAAAGAAGAGGGGGTGCG
TAGACCACGTATTCACGGTAGGGAGAATCATCCAAGGTAGAAAGAGGGCG
GGAAAGCCGACGTACTGCTTCTTCCTGGACGTGAAAAAGGCATACGACAC
CGTGTGGAGAAATGGGTTGTGGAAACAACTGTCCAAATACGGGATCAAGG
GGAAAATGTGGAGAGTGCTGAAGAAGATGACAGAGTGCACGAAAAGCGCG
GTCATGCTAGACGGAGAACTGTCAAAATTCTTCGACATTGAGCAGGGGGT
CCCACAAGGTTGCACGCTGTCCCCAACATTGTTCCAGGTGTTCATCAACG
ATCTGTTGGAAGTCGTAGAGGCAGTCCGGAAGGGAGTAAAAGTAGGGGAC
ACGGAAACGTCGGTTTCAGGAATGCTGTTTGCGGATGATTTTGTCGGTAT
GTCGGACACCCCTGAGGGACTGCAACTGCAAATTGACGCGGCGAAGAAGT
TTACTGATAAGTGGAGATTGTCTGCCAACGTTCAGAAGAGTGCCGTCATG
GTTTGCAACGAGAACAAGGAGGAACCAGTAGAACATAGATGGAAGTGGGG
GATCGAGGAGATTGCAGTAGTGGACCAGTACACATACCTCGGAGTAGAGA
TCGCAAAAGACTGCTCGTGGAATGCACACATGTCCAAGGTAGCGGAAAAG
GGCAAATCACGAGCAGGGAAGCTGCACCCAATACTCGCAAACCGGCACCT
CGATACACGCATCAAATTGACGGTTTTGAAGAGCGTAATCGTACCGCCGC
TAGAGTACGCCGGAGAAGTATGGGAAGGAAATAAGAAGGTAGTGAAAGAA
CTCGAGGCGGCGCAGATGAAAGCAGCGAAAACCATCCTAGGATGCTCCAG
GCGCACAAGTAATGCAGCCGTGAGGGCAGAATTGGGGATCCAATCCCTAC
GGTCGGGAAGAGACGCGAGGAAGCTGACCTGGCAGTATCGCATGTGCGGG
ATGGGAGAGGAGAGGTTGCCGAGAATTGTATGGGAGGCGAAGTGGGCAAA
CAAAAAGAGGGGTAGACAACCCACGGAATGGGTCAAGGTTGTAGAGGACG
TATGGAAGGGGCTCGACATCGACGAAGATGAAACGCTGGAAACGGAGGGT
CTACAGGGGTTCAAGGAGAAGATATCTGTTGCTTGTGCCGAGAGAGAAGA
ACAGAATCTGAGGAAAGAATCCAAGGATAAGGAGGGTCTAGAAGTGTACG
GAATGTTGAAGGAAGGAATAGGGTTCAAGGACTACCTACATGGACCAATG
GATGCAGGAACAAAGCTTAAGGTCAAATTCAGGACCGGGGACATAGGCCT
TCGAGAACGTCGACGAAGACATAGGACGGTAGACGAGGAAGACGACGAGT
TCAAATGTGATTGCGGCTTCGAATGCGAAGACCGTGTTCATGTAGTCGCG
GAATGTCCGTTGTACAAGAAGGAGAGGGAAGTGTACGTGACTGAGCTGGG
AAAAATAGATGGAACGTACAGGGAGATGTTTGAGGCATGGAATAGAGAGG
AAAGGACGGTAGCTGTACTGGGGCATAGGAGGTGGGTTGAAAAGGCGGGA
AGGGATATCGTTAGGATAGACAGACTAGGGAAGACATTTTTGAGCCACCT
TTGGCAAAGTAGAAAGGAACGATTGGCCATCGGTGATCGGTCCTGTGGGA
ACAATGCTCCGTCCTCTCGAGGACGCGTGGTCAATGGTCTAAGCGCTAAG
GCATGCAAAACATAATAGTACGCCCCTTCCCCCCCAGCGCC

protein sequence of EsuBft613_3a-0001

>EsuBft613_3 ID=EsuBft613_3|Name=EsuBft613_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=664bp
MNFGGKGTIRLMVLLYNWVWKNEYTPSTWREGAVVNLLKKGDKTDPGNYR
GITLLHTVGKVFCKLLNDRIVGVLEKEHSISEGQAGFRKKRGCVDHVFTV
GRIIQGRKRAGKPTYCFFLDVKKAYDTVWRNGLWKQLSKYGIKGKMWRVL
KKMTECTKSAVMLDGELSKFFDIEQGVPQGCTLSPTLFQVFINDLLEVVE
AVRKGVKVGDTETSVSGMLFADDFVGMSDTPEGLQLQIDAAKKFTDKWRL
SANVQKSAVMVCNENKEEPVEHRWKWGIEEIAVVDQYTYLGVEIAKDCSW
NAHMSKVAEKGKSRAGKLHPILANRHLDTRIKLTVLKSVIVPPLEYAGEV
WEGNKKVVKELEAAQMKAAKTILGCSRRTSNAAVRAELGIQSLRSGRDAR
KLTWQYRMCGMGEERLPRIVWEAKWANKKRGRQPTEWVKVVEDVWKGLDI
DEDETLETEGLQGFKEKISVACAEREEQNLRKESKDKEGLEVYGMLKEGI
GFKDYLHGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDEFKCDCGF
ECEDRVHVVAECPLYKKEREVYVTELGKIDGTYREMFEAWNREERTVAVL
GHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSR
GRVVNGLSAKACKT

mRNA from alignment at Scaffold_119:143880..145920+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft613_3a-0001 ID=EsuBft613_3a-0001|Name=EsuBft613_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2041bp|location=Sequence derived from alignment at Scaffold_119:143880..145920+ (Ectocarpus subulatus male Bft15b)
ATGGGATAGTCGACGAGTTCATGAATTTTGGGGGGAAGGGGACGATCCGA
CTGATGGTACTGCTGTACAATTGGGTGTGGAAAAACGAGTACACGCCAAG
TACATGGAGGGAAGGGGCGGTTGTGAACTTGTTAAAGAAGGGAGACAAGA
CTGACCCAGGAAACTACAGAGGGATCACACTGTTACACACAGTAGGAAAA
GTGTTCTGTAAGCTGCTGAATGATAGGATAGTGGGAGTATTGGAGAAGGA
ACATAGCATTAGTGAGGGCCAGGCAGGTTTCCGAAAGAAGAGGGGGTGCG
TAGACCACGTATTCACGGTAGGGAGAATCATCCAAGGTAGAAAGAGGGCG
GGAAAGCCGACGTACTGCTTCTTCCTGGACGTGAAAAAGGCATACGACAC
CGTGTGGAGAAATGGGTTGTGGAAACAACTGTCCAAATACGGGATCAAGG
GGAAAATGTGGAGAGTGCTGAAGAAGATGACAGAGTGCACGAAAAGCGCG
GTCATGCTAGACGGAGAACTGTCAAAATTCTTCGACATTGAGCAGGGGGT
CCCACAAGGTTGCACGCTGTCCCCAACATTGTTCCAGGTGTTCATCAACG
ATCTGTTGGAAGTCGTAGAGGCAGTCCGGAAGGGAGTAAAAGTAGGGGAC
ACGGAAACGTCGGTTTCAGGAATGCTGTTTGCGGATGATTTTGTCGGTAT
GTCGGACACCCCTGAGGGACTGCAACTGCAAATTGACGCGGCGAAGAAGT
TTACTGATAAGTGGAGATTGTCTGCCAACGTTCAGAAGAGTGCCGTCATG
GTTTGCAACGAGAACAAGGAGGAACCAGTAGAACATAGATGGAAGTGGGG
GATCGAGGAGATTGCAGTAGTGGACCAGTACACATACCTCGGAGTAGAGA
TCGCAAAAGACTGCTCGTGGAATGCACACATGTCCAAGGTAGCGGAAAAG
GGCAAATCACGAGCAGGGAAGCTGCACCCAATACTCGCAAACCGGCACCT
CGATACACGCATCAAATTGACGGTTTTGAAGAGCGTAATCGTACCGCCGC
TAGAGTACGCCGGAGAAGTATGGGAAGGAAATAAGAAGGTAGTGAAAGAA
CTCGAGGCGGCGCAGATGAAAGCAGCGAAAACCATCCTAGGATGCTCCAG
GCGCACAAGTAATGCAGCCGTGAGGGCAGAATTGGGGATCCAATCCCTAC
GGTCGGGAAGAGACGCGAGGAAGCTGACCTGGCAGTATCGCATGTGCGGG
ATGGGAGAGGAGAGGTTGCCGAGAATTGTATGGGAGGCGAAGTGGGCAAA
CAAAAAGAGGGGTAGACAACCCACGGAATGGGTCAAGGTTGTAGAGGACG
TATGGAAGGGGCTCGACATCGACGAAGATGAAACGCTGGAAACGGAGGGT
CTACAGGGGTTCAAGGAGAAGATATCTGTTGCTTGTGCCGAGAGAGAAGA
ACAGAATCTGAGGAAAGAATCCAAGGATAAGGAGGGTCTAGAAGTGTACG
GAATGTTGAAGGAAGGAATAGGGTTCAAGGACTACCTACATGGACCAATG
GATGCAGGAACAAAGCTTAAGGTCAAATTCAGGACCGGGGACATAGGCCT
TCGAGAACGTCGACGAAGACATAGGACGGTAGACGAGGAAGACGACGAGT
TCAAATGTGATTGCGGCTTCGAATGCGAAGACCGTGTTCATGTAGTCGCG
GAATGTCCGTTGTACAAGAAGGAGAGGGAAGTGTACGTGACTGAGCTGGG
AAAAATAGATGGAACGTACAGGGAGATGTTTGAGGCATGGAATAGAGAGG
AAAGGACGGTAGCTGTACTGGGGCATAGGAGGTGGGTTGAAAAGGCGGGA
AGGGATATCGTTAGGATAGACAGACTAGGGAAGACATTTTTGAGCCACCT
TTGGCAAAGTAGAAAGGAACGATTGGCCATCGGTGATCGGTCCTGTGGGA
ACAATGCTCCGTCCTCTCGAGGACGCGTGGTCAATGGTCTAAGCGCTAAG
GCATGCAAAACATAATAGTACGCCCCTTCCCCCCCAGCGCC

Coding sequence (CDS) from alignment at Scaffold_119:143880..145920+

>EsuBft613_3a-0001 ID=EsuBft613_3a-0001|Name=EsuBft613_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1995bp|location=Sequence derived from alignment at Scaffold_119:143880..145920+ (Ectocarpus subulatus male Bft15b)
ATGAATTTTGGGGGGAAGGGGACGATCCGACTGATGGTACTGCTGTACAA
TTGGGTGTGGAAAAACGAGTACACGCCAAGTACATGGAGGGAAGGGGCGG
TTGTGAACTTGTTAAAGAAGGGAGACAAGACTGACCCAGGAAACTACAGA
GGGATCACACTGTTACACACAGTAGGAAAAGTGTTCTGTAAGCTGCTGAA
TGATAGGATAGTGGGAGTATTGGAGAAGGAACATAGCATTAGTGAGGGCC
AGGCAGGTTTCCGAAAGAAGAGGGGGTGCGTAGACCACGTATTCACGGTA
GGGAGAATCATCCAAGGTAGAAAGAGGGCGGGAAAGCCGACGTACTGCTT
CTTCCTGGACGTGAAAAAGGCATACGACACCGTGTGGAGAAATGGGTTGT
GGAAACAACTGTCCAAATACGGGATCAAGGGGAAAATGTGGAGAGTGCTG
AAGAAGATGACAGAGTGCACGAAAAGCGCGGTCATGCTAGACGGAGAACT
GTCAAAATTCTTCGACATTGAGCAGGGGGTCCCACAAGGTTGCACGCTGT
CCCCAACATTGTTCCAGGTGTTCATCAACGATCTGTTGGAAGTCGTAGAG
GCAGTCCGGAAGGGAGTAAAAGTAGGGGACACGGAAACGTCGGTTTCAGG
AATGCTGTTTGCGGATGATTTTGTCGGTATGTCGGACACCCCTGAGGGAC
TGCAACTGCAAATTGACGCGGCGAAGAAGTTTACTGATAAGTGGAGATTG
TCTGCCAACGTTCAGAAGAGTGCCGTCATGGTTTGCAACGAGAACAAGGA
GGAACCAGTAGAACATAGATGGAAGTGGGGGATCGAGGAGATTGCAGTAG
TGGACCAGTACACATACCTCGGAGTAGAGATCGCAAAAGACTGCTCGTGG
AATGCACACATGTCCAAGGTAGCGGAAAAGGGCAAATCACGAGCAGGGAA
GCTGCACCCAATACTCGCAAACCGGCACCTCGATACACGCATCAAATTGA
CGGTTTTGAAGAGCGTAATCGTACCGCCGCTAGAGTACGCCGGAGAAGTA
TGGGAAGGAAATAAGAAGGTAGTGAAAGAACTCGAGGCGGCGCAGATGAA
AGCAGCGAAAACCATCCTAGGATGCTCCAGGCGCACAAGTAATGCAGCCG
TGAGGGCAGAATTGGGGATCCAATCCCTACGGTCGGGAAGAGACGCGAGG
AAGCTGACCTGGCAGTATCGCATGTGCGGGATGGGAGAGGAGAGGTTGCC
GAGAATTGTATGGGAGGCGAAGTGGGCAAACAAAAAGAGGGGTAGACAAC
CCACGGAATGGGTCAAGGTTGTAGAGGACGTATGGAAGGGGCTCGACATC
GACGAAGATGAAACGCTGGAAACGGAGGGTCTACAGGGGTTCAAGGAGAA
GATATCTGTTGCTTGTGCCGAGAGAGAAGAACAGAATCTGAGGAAAGAAT
CCAAGGATAAGGAGGGTCTAGAAGTGTACGGAATGTTGAAGGAAGGAATA
GGGTTCAAGGACTACCTACATGGACCAATGGATGCAGGAACAAAGCTTAA
GGTCAAATTCAGGACCGGGGACATAGGCCTTCGAGAACGTCGACGAAGAC
ATAGGACGGTAGACGAGGAAGACGACGAGTTCAAATGTGATTGCGGCTTC
GAATGCGAAGACCGTGTTCATGTAGTCGCGGAATGTCCGTTGTACAAGAA
GGAGAGGGAAGTGTACGTGACTGAGCTGGGAAAAATAGATGGAACGTACA
GGGAGATGTTTGAGGCATGGAATAGAGAGGAAAGGACGGTAGCTGTACTG
GGGCATAGGAGGTGGGTTGAAAAGGCGGGAAGGGATATCGTTAGGATAGA
CAGACTAGGGAAGACATTTTTGAGCCACCTTTGGCAAAGTAGAAAGGAAC
GATTGGCCATCGGTGATCGGTCCTGTGGGAACAATGCTCCGTCCTCTCGA
GGACGCGTGGTCAATGGTCTAAGCGCTAAGGCATGCAAAACATAA