EsuBft613_17a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft613_17a-0001
Unique NameEsuBft613_17a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_119contigScaffold_119:416..868 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft613_17
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length45
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_003550.1
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft613_17aEsuBft613_17aEctocarpus subulatus male Bft15bgeneScaffold_119 416..868 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft613_17a-0001-exonEsuBft613_17a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_119 416..868 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft613_17a-0001-cdsEsuBft613_17a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_119 416..868 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft613_17a-0001EsuBft613_17Ectocarpus subulatus male Bft15bpolypeptideScaffold_119 416..868 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft613_17a-0001 ID=EsuBft613_17a-0001|Name=EsuBft613_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=453bp|location=Sequence derived from alignment at Scaffold_119:416..868- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCTCTGCGGCTACTAGCTTTGACCGGGGTTCTGGAACGAAGAGGAA
TTCAGCTGTCGATACCTCCGGCGTACCATGGAGTCGCCGTATCTCCGCGG
CGCAAATGGGCGTAGTTTCAGCCATAGCTTCAGAGGCAGCGCCATCAGCC
ATGATCGCGAGGATCAAGAGGATGAATCCGAAGAAGGGGAAGGCGGAAAC
GACGGAACTGGTGCAGACTGAGGAGAAGGGCGAGACGTCGAAGGATAGCT
GCAGGAGTGGCAGTATTGGGGAGGATGCGATCGAAGTCGTCACGTTTGTT
CAACGCAGTTCCGGGTCTTTCGGTGCCGATTGTATCCGCCATCCCCCGCA
CCCTAGGGCAGCAAGAGTGCTTCCGATCAGTGTGCCGTTGACGGCTGTTT
CCGTAAGTAGCGACGAGACGAGTACGAGTAGCATGACTGCCGGACGCAAT
TAG
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protein sequence of EsuBft613_17a-0001

>EsuBft613_17 ID=EsuBft613_17|Name=EsuBft613_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=150bp
MFSAATSFDRGSGTKRNSAVDTSGVPWSRRISAAQMGVVSAIASEAAPSA
MIARIKRMNPKKGKAETTELVQTEEKGETSKDSCRSGSIGEDAIEVVTFV
QRSSGSFGADCIRHPPHPRAARVLPISVPLTAVSVSSDETSTSSMTAGRN
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mRNA from alignment at Scaffold_119:416..868-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft613_17a-0001 ID=EsuBft613_17a-0001|Name=EsuBft613_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=453bp|location=Sequence derived from alignment at Scaffold_119:416..868- (Ectocarpus subulatus male Bft15b)
ATGTTCTCTGCGGCTACTAGCTTTGACCGGGGTTCTGGAACGAAGAGGAA
TTCAGCTGTCGATACCTCCGGCGTACCATGGAGTCGCCGTATCTCCGCGG
CGCAAATGGGCGTAGTTTCAGCCATAGCTTCAGAGGCAGCGCCATCAGCC
ATGATCGCGAGGATCAAGAGGATGAATCCGAAGAAGGGGAAGGCGGAAAC
GACGGAACTGGTGCAGACTGAGGAGAAGGGCGAGACGTCGAAGGATAGCT
GCAGGAGTGGCAGTATTGGGGAGGATGCGATCGAAGTCGTCACGTTTGTT
CAACGCAGTTCCGGGTCTTTCGGTGCCGATTGTATCCGCCATCCCCCGCA
CCCTAGGGCAGCAAGAGTGCTTCCGATCAGTGTGCCGTTGACGGCTGTTT
CCGTAAGTAGCGACGAGACGAGTACGAGTAGCATGACTGCCGGACGCAAT
TAG
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Coding sequence (CDS) from alignment at Scaffold_119:416..868-

>EsuBft613_17a-0001 ID=EsuBft613_17a-0001|Name=EsuBft613_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=453bp|location=Sequence derived from alignment at Scaffold_119:416..868- (Ectocarpus subulatus male Bft15b)
ATGTTCTCTGCGGCTACTAGCTTTGACCGGGGTTCTGGAACGAAGAGGAA
TTCAGCTGTCGATACCTCCGGCGTACCATGGAGTCGCCGTATCTCCGCGG
CGCAAATGGGCGTAGTTTCAGCCATAGCTTCAGAGGCAGCGCCATCAGCC
ATGATCGCGAGGATCAAGAGGATGAATCCGAAGAAGGGGAAGGCGGAAAC
GACGGAACTGGTGCAGACTGAGGAGAAGGGCGAGACGTCGAAGGATAGCT
GCAGGAGTGGCAGTATTGGGGAGGATGCGATCGAAGTCGTCACGTTTGTT
CAACGCAGTTCCGGGTCTTTCGGTGCCGATTGTATCCGCCATCCCCCGCA
CCCTAGGGCAGCAAGAGTGCTTCCGATCAGTGTGCCGTTGACGGCTGTTT
CCGTAAGTAGCGACGAGACGAGTACGAGTAGCATGACTGCCGGACGCAAT
TAG
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