EsuBft613_16a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft613_16a-0001
Unique Name	EsuBft613_16a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_119	contig	Scaffold_119:2492..3419 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	6500.XP_005110414.1
ProteomeId	EsuBft613_16
Protein domains	Coil
Protein domains	IPR000477
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	33208\|Metazoa
Length	92
Evalue	0.000343
EggNOG OGs	KOG1075@1\|root,KOG1075@2759\|Eukaryota,39TZY@33154\|Opisthokonta,3BI15@33208\|Metazoa,3E41I@33213\|Bilateria
Date last modified	2016-06-15
Date creation	2016-06-15
Description	Reverse transcriptase (RNA-dependent DNA polymerase)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft613_16a	EsuBft613_16a	Ectocarpus subulatus male Bft15b	gene	Scaffold_119 2492..3419 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft613_16a-0001-exon	EsuBft613_16a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_119 2492..3419 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft613_16a-0001-exon	agat-five_prime_utr-12253	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_119 2492..2597 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft613_16a-0001-cds	EsuBft613_16a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_119 2598..3419 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft613_16a-0001	EsuBft613_16	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_119 2598..3419 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_119:2492..3419+
coding sequence from alignment at Scaffold_119:2492..3419+

spliced messenger RNA

>EsuBft613_16a-0001 ID=EsuBft613_16a-0001|Name=EsuBft613_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=928bp|location=Sequence derived from alignment at Scaffold_119:2492..3419+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGGTGACG
GCGGACATGGTCAAGATCGGGACACAAGTGGAGTACACGGGCAAGAAGGG
CAGGTCGGCGGGGAAGAAGACGACGGTGGTGACGGACGCGGAGGCCCCGT
GGGTCATGCTCTACGCGGACGACACGGCCATCATCTCGCGCTCGCAGGAG
AGTCTCGAGAAGGTGATGTCGGTCATCGTGCGCGTGGTCGGCCTGTTCGG
ACTGATGGTATCGGAGCCAAAGACGGAGATCATGTGCATGCTGCCGAAAG
GGATCGAGGAACGCCCGTTGACGGTCAGCGCCGCCGGCCAGACGTACAAG
CAGACAGATCGGTTTGTGTACCTCGGACGTACCATCTCCGCGGACGGGAA
GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNGGATACCGGGGCGGGCAGGAGAGCGACTGGGTGTCTCGTC
TAGGACAGGACCTCGTGGCCTTGAACATGGGAGACGAAAAGAAGGGAGGA
AATGGAAAGAGAGCGCCATGGACCCGGAGGTGTGGTACTACAAGGTCGAG
GACGGGTCGGCATGGCTCATGAGGAAATGGCACAGGCAGGAGGCGGAAGC
GTCCGCGAAGCGCCAGCGCGCGAGGGAAGCAGAAGCAGAGAGTACGGCCA
TCTCAGGACCGAAGAGAAAGAGAGCCGGGGAAGCGGCGGTGGGGGGGAAG
AAACGGCGACCGGGCACTGCTGTAGAAGCGAGTAGGGCGGCCGAGGCAGC
ACTTGTGGCGAATTATGTACCCGGCTGA

protein sequence of EsuBft613_16a-0001

>EsuBft613_16 ID=EsuBft613_16|Name=EsuBft613_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=273bp
MVKIGTQVEYTGKKGRSAGKKTTVVTDAEAPWVMLYADDTAIISRSQESL
EKVMSVIVRVVGLFGLMVSEPKTEIMCMLPKGIEERPLTVSAAGQTYKQT
DRFVYLGRTISADGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXIPGRAGERLGVSSRTGPRGLEHGRRKEGRKWKESAMDPEVWYYKVEDG
SAWLMRKWHRQEAEASAKRQRAREAEAESTAISGPKRKRAGEAAVGGKKR
RPGTAVEASRAAEAALVANYVPG

mRNA from alignment at Scaffold_119:2492..3419+

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft613_16a-0001 ID=EsuBft613_16a-0001|Name=EsuBft613_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=928bp|location=Sequence derived from alignment at Scaffold_119:2492..3419+ (Ectocarpus subulatus male Bft15b)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGGTGACG
GCGGACATGGTCAAGATCGGGACACAAGTGGAGTACACGGGCAAGAAGGG
CAGGTCGGCGGGGAAGAAGACGACGGTGGTGACGGACGCGGAGGCCCCGT
GGGTCATGCTCTACGCGGACGACACGGCCATCATCTCGCGCTCGCAGGAG
AGTCTCGAGAAGGTGATGTCGGTCATCGTGCGCGTGGTCGGCCTGTTCGG
ACTGATGGTATCGGAGCCAAAGACGGAGATCATGTGCATGCTGCCGAAAG
GGATCGAGGAACGCCCGTTGACGGTCAGCGCCGCCGGCCAGACGTACAAG
CAGACAGATCGGTTTGTGTACCTCGGACGTACCATCTCCGCGGACGGGAA
GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNGGATACCGGGGCGGGCAGGAGAGCGACTGGGTGTCTCGTC
TAGGACAGGACCTCGTGGCCTTGAACATGGGAGACGAAAAGAAGGGAGGA
AATGGAAAGAGAGCGCCATGGACCCGGAGGTGTGGTACTACAAGGTCGAG
GACGGGTCGGCATGGCTCATGAGGAAATGGCACAGGCAGGAGGCGGAAGC
GTCCGCGAAGCGCCAGCGCGCGAGGGAAGCAGAAGCAGAGAGTACGGCCA
TCTCAGGACCGAAGAGAAAGAGAGCCGGGGAAGCGGCGGTGGGGGGGAAG
AAACGGCGACCGGGCACTGCTGTAGAAGCGAGTAGGGCGGCCGAGGCAGC
ACTTGTGGCGAATTATGTACCCGGCTGA

Coding sequence (CDS) from alignment at Scaffold_119:2492..3419+

>EsuBft613_16a-0001 ID=EsuBft613_16a-0001|Name=EsuBft613_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=822bp|location=Sequence derived from alignment at Scaffold_119:2492..3419+ (Ectocarpus subulatus male Bft15b)
ATGGTCAAGATCGGGACACAAGTGGAGTACACGGGCAAGAAGGGCAGGTC
GGCGGGGAAGAAGACGACGGTGGTGACGGACGCGGAGGCCCCGTGGGTCA
TGCTCTACGCGGACGACACGGCCATCATCTCGCGCTCGCAGGAGAGTCTC
GAGAAGGTGATGTCGGTCATCGTGCGCGTGGTCGGCCTGTTCGGACTGAT
GGTATCGGAGCCAAAGACGGAGATCATGTGCATGCTGCCGAAAGGGATCG
AGGAACGCCCGTTGACGGTCAGCGCCGCCGGCCAGACGTACAAGCAGACA
GATCGGTTTGTGTACCTCGGACGTACCATCTCCGCGGACGGGAAGGNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGGATACCGGGGCGGGCAGGAGAGCGACTGGGTGTCTCGTCTAGGAC
AGGACCTCGTGGCCTTGAACATGGGAGACGAAAAGAAGGGAGGAAATGGA
AAGAGAGCGCCATGGACCCGGAGGTGTGGTACTACAAGGTCGAGGACGGG
TCGGCATGGCTCATGAGGAAATGGCACAGGCAGGAGGCGGAAGCGTCCGC
GAAGCGCCAGCGCGCGAGGGAAGCAGAAGCAGAGAGTACGGCCATCTCAG
GACCGAAGAGAAAGAGAGCCGGGGAAGCGGCGGTGGGGGGGAAGAAACGG
CGACCGGGCACTGCTGTAGAAGCGAGTAGGGCGGCCGAGGCAGCACTTGT
GGCGAATTATGTACCCGGCTGA