EsuBft613_15a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft613_15a-0001
Unique NameEsuBft613_15a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_119contigScaffold_119:3733..5145 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft613_15
Protein domainsTMhelix
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Protein domainsCYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length54
Hectar predicted targeting categoryother localisation
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft613_15aEsuBft613_15aEctocarpus subulatus male Bft15bgeneScaffold_119 3733..5145 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft613_15a-0001-exonagat-exon-107631Ectocarpus subulatus male Bft15bexonScaffold_119 3733..3783 -
EsuBft613_15a-0001-exonagat-exon-107630Ectocarpus subulatus male Bft15bexonScaffold_119 3970..4131 -
EsuBft613_15a-0001-exonEsuBft613_15a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_119 4816..5145 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft613_15a-0001-cdsEsuBft613_15a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_119 3733..3783 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft613_15a-0001EsuBft613_15Ectocarpus subulatus male Bft15bpolypeptideScaffold_119 3733..5145 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft613_15a-0001 ID=EsuBft613_15a-0001|Name=EsuBft613_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=543bp|location=Sequence derived from alignment at Scaffold_119:3733..5145- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTATCGGATTAGCAGTCCGGGCGGGCGACATAGGCTACCACGATGA
CGGCCCACTTCAAGTCGCATACATACTTTTGCGGCCATGTGCTATGTTCG
AGGTTGCAATGATAGCCGAATATTGGGTGGAGAGCTTGCCTTCGCAGATA
CTCACTCCCGACAGTTTTGCGGGAAAGCTGAGAAACGCATCGGAAACGAG
CAGCCTCTTCGTGGTCATCGGAGTTGCCAACGGAGGGCTTGTATCGTTGC
TTGGCGTGATGACGTTCTTCGCTCGGACTTGGCCCCAGCAGGCGGCCGAC
ATTTTTGTTGTCGGCGGCATCCTTACCGCGGGTTCACCTTCGTCGAGGAC
TTTCTATTCCAAGGCCAAGAGGAATCTGTGGATACAAGCCGCGGCGTTGA
GCGGTGTGGGCTGCTTCCCTATGCTCGTTATCGCCATAAAGCTCCTCACC
ATGGCTGGACGAAGTACCCCTATCATCCTAGAGACACTGCAGGTACCGCA
CCGACCGTTCGAGAAAAGAGCCCTCGGAAACCGATCAAAGTAA
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protein sequence of EsuBft613_15a-0001

>EsuBft613_15 ID=EsuBft613_15|Name=EsuBft613_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=180bp
MAIGLAVRAGDIGYHDDGPLQVAYILLRPCAMFEVAMIAEYWVESLPSQI
LTPDSFAGKLRNASETSSLFVVIGVANGGLVSLLGVMTFFARTWPQQAAD
IFVVGGILTAGSPSSRTFYSKAKRNLWIQAAALSGVGCFPMLVIAIKLLT
MAGRSTPIILETLQVPHRPFEKRALGNRSK
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mRNA from alignment at Scaffold_119:3733..5145-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft613_15a-0001 ID=EsuBft613_15a-0001|Name=EsuBft613_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1413bp|location=Sequence derived from alignment at Scaffold_119:3733..5145- (Ectocarpus subulatus male Bft15b)
ATGGCTATCGGATTAGCAGTCCGGGCGGGCGACATAGGCTACCACGATGA
CGGCCCACTTCAAGTCGCATACATACTTTTGCGGCCATGTGCTATGTTCG
AGGTTGCAATGATAGCCGAATATTGGGTGGAGAGCTTGCCTTCGCAGATA
CTCACTCCCGACAGTTTTGCGGGAAAGCTGAGAAACGCATCGGAAACGAG
CAGCCTCTTCGTGGTCATCGGAGTTGCCAACGGAGGGCTTGTATCGTTGC
TTGGCGTGATGACGTTCTTCGCTCGGACTTGGCCCCAGCAGGCGGCCGAC
ATTTTTGTTGTCGGCGGCATCCTTACCGCGGTGAGGTGTCGTGGAATATC
TTGGCGTATCACTGCTGATATATCATGGTTTGTTGACTTTGTGCATCGTT
CCGCGTTGCGCAGCAACCCGGTATATCTATTTTGACGTCTCGGGCACATG
ACTCACTAGAGGAAGGATCTCTGCGACCGTGGAGACCTGTGTCCGTGACC
ATCACCACGCAAAGCTGGAAACCGCCAACACCAGAGTGGCAACAGTCATT
CTAGCGGGGTGATGCTCACAGCCAAACAAACAACCTATGACGGTTCAGAT
TGATCGCATTTCCATCTCAGACCTGAAATTTCCTGAAACTCGTCTGGTGT
CTCGCCGTCTCGACCAGGAATTGGTCGTCTTCTTCGTGGCTTCAAGAATA
ACGGCGGTCATCAACCAAGCCACCTCCAAAGAGATCGGAAGGCCTGTAAG
TCGTTTCCAAGCTTGCGTTCTAACGATCTCGCTACGCATGGACCTAGGGT
AGTGCCGGGAACACATTCCACTGTGAATTGATGGCCCCGCAATCACCATG
CATGCGCAAGGACAGGACACGTTCCACGAAAGAATGCCACCCTCTCCCTA
ACACAAGTGGAAATCTGTTTGACAGATCGACACTGTATGCGAAAAGTTGG
CGTCCATCTTTCTTGTTACTGCAAGAGTGCGTTTACAAATATTTTCGTGT
CTCCTCCGAGCCAGGGTTCACCTTCGTCGAGGACTTTCTATTCCAAGGCC
AAGAGGAATCTGTGGATACAAGCCGCGGCGTTGAGCGGTGTGGGCTGCTT
CCCTATGCTCGTTATCGCCATAAAGCTCCTCACCATGGCTGGACGAAGTA
CCCCTATCATCCTAGAGACACTGCAGGTGAAAGGAAGCATCGGTTTTATC
GTATATGGTTGTTGTTGTTTCTCACATTTGCTCTACAGTCCACAAAAAAT
GGGGGGCCGGGGTCTCACAACCCGGCACATACGAAGCCGCGAGGAAACAA
AACACAAACAGGGTACCAACCACTCAGAAAAAAGAAAACAAAATGAAAAA
AATATATAACAGGTACCGCACCGACCGTTCGAGAAAAGAGCCCTCGGAAA
CCGATCAAAGTAA
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Coding sequence (CDS) from alignment at Scaffold_119:3733..5145-

>EsuBft613_15a-0001 ID=EsuBft613_15a-0001|Name=EsuBft613_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=543bp|location=Sequence derived from alignment at Scaffold_119:3733..5145- (Ectocarpus subulatus male Bft15b)
ATGGCTATCGGATTAGCAGTCCGGGCGGGCGACATAGGCTACCACGATGA
CGGCCCACTTCAAGTCGCATACATACTTTTGCGGCCATGTGCTATGTTCG
AGGTTGCAATGATAGCCGAATATTGGGTGGAGAGCTTGCCTTCGCAGATA
CTCACTCCCGACAGTTTTGCGGGAAAGCTGAGAAACGCATCGGAAACGAG
CAGCCTCTTCGTGGTCATCGGAGTTGCCAACGGAGGGCTTGTATCGTTGC
TTGGCGTGATGACGTTCTTCGCTCGGACTTGGCCCCAGCAGGCGGCCGAC
ATTTTTGTTGTCGGCGGCATCCTTACCGCGGGTTCACCTTCGTCGAGGAC
TTTCTATTCCAAGGCCAAGAGGAATCTGTGGATACAAGCCGCGGCGTTGA
GCGGTGTGGGCTGCTTCCCTATGCTCGTTATCGCCATAAAGCTCCTCACC
ATGGCTGGACGAAGTACCCCTATCATCCTAGAGACACTGCAGGTACCGCA
CCGACCGTTCGAGAAAAGAGCCCTCGGAAACCGATCAAAGTAA
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