EsuBft613_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft613_12a-0001
Unique NameEsuBft613_12a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_119contigScaffold_119:38525..41334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft613_12
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length218
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft613_12aEsuBft613_12aEctocarpus subulatus male Bft15bgeneScaffold_119 38525..41334 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft613_12a-0001EsuBft613_12Ectocarpus subulatus male Bft15bpolypeptideScaffold_119 41121..41334 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft613_12a-0001-exonagat-exon-107620Ectocarpus subulatus male Bft15bexonScaffold_119 38525..39794 -
EsuBft613_12a-0001-exonagat-exon-107622Ectocarpus subulatus male Bft15bexonScaffold_119 39837..40190 -
EsuBft613_12a-0001-exonEsuBft613_12a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_119 40702..41129 -
EsuBft613_12a-0001-exonagat-exon-107621Ectocarpus subulatus male Bft15bexonScaffold_119 41206..41334 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft613_12a-0001-exonagat-three_prime_utr-19194Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_119 38525..39794 -
EsuBft613_12a-0001-exonagat-three_prime_utr-19195Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_119 39837..40190 -
EsuBft613_12a-0001-exonagat-three_prime_utr-19196Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_119 40702..41120 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft613_12a-0001-cdsEsuBft613_12a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_119 41121..41129 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft613_12a-0001 ID=EsuBft613_12a-0001|Name=EsuBft613_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2181bp|location=Sequence derived from alignment at Scaffold_119:38525..41334- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTCCGGTTCAGAGGGGTTCGAAGATGACGGGCTGGGGCTAGATGC
GTCGGTTTCGGATGATGGTCCAGCTGGCGTCGATGAAAGGTGCGGTGATG
GGGCGTCCCCGTCGCGGAGATCTTCGCAGGTGCATTAACAGGCCCCATGG
CAATCAACGGGGCGGGAGGGGGGCGGGAGGAAACGGCGCGGGAAGAAAGC
AAGCGAGAAGAGACCGACCGTGTGACGTGACATGTTGCGGTTGAATTTCA
GCGACTAGTTTTTCTGTTGCCCTCTCCCCCGTTTGCTGTCGCGTTCAAAC
TGTCTCTACGGATATCCCTGTCTCTGTGCGAGTTTGTTTATGTCCTCGTC
TGTCTTTGGTTTATTTCGTTTTTGTTTTGTTTTTTTACTGGCACGTACTG
TTGACCCTTGGGGTCCTTCCGGAAGGCTACCCCCCAGGCTGGTGGTGCGC
ACGTTCCACTTTTTATTTATTTATTTGTTTCTGATTCTTTTGTTTTCTTG
TACTTTATCGCTTTGCTAACCCTTGGGGTCCATTTTATTTTGGTATACCT
TTTCTAGGTGTCCGCGCTCACAAGCGTCAAGCAGACGGCGTTCGCCGTGT
GGGTCTGTGACTGCTTCTGGTGGGGCATGAGGGATCTCGTGACAGATGGC
TGGACGTTCTGCTCGAACGTGATGTCGAGGATGCACATGCCTTGGTCTCG
CGGATCTTGTGTGAGTGGAATCACCTTGCTTTGAATAGTGAGGTGCGGAG
TGCTCTCTTCGACCACGCAGCGCAATCCCTTTTTCAGGAGGGAGGTGGGC
GAAAAAGTGTTGCGACCAAGCCCCGGAACGATTAGTCCCTGAATCCGCAC
GCGCAATTGCTGTCCTCGATTGTCCTTGAGGGTACAGTGTAGGATGCCCG
TGGCCGTGCCTTTTCGCTGGGTGTAATCGTGGAGGTTTCCGTTGGGGATG
AGGCGATTGTCAAACATGGCCTCCGATGCTCCCGTGTCTAACAGCAGTCC
TACCCCGGTGGAGCTCGCGGCGAAGTTGCGTCCTGAGATGCGGGAACACG
TACCGAACATGAAGCCGCTGTCGAAGGTGTCCTCATCCCGGGTGAAGTCG
ACAACTGCCACTTCATTGTTTGAGTCGTTCTTGTTGGACGCCGACGAGCA
GTGAGTGCCGCCGGAGCACGCGGTGAATGCTTTTCTTGAGTCCTTGGTGT
CTTCCGGACGCTTTCCTCCTTGTTGGTAGCATGTCTCGGCCGAGTGAGAC
GTAGTGTTGTGCTTGGAGCACCACTCGGTAGCTCCGGCAGGCTTTGTTTT
CTTCATCGCCCTGTTCTTGATCTTGGCGTAGCTCCTCCTGATGTGCCCGG
GCTCGTAGCAGCTGTGGCAGATGATGTCAGACGCGGTCGTTGCCATGGCA
AATCCTCGACCAGCTATGCGTCCCTTCCATCCCTTGCGCGATTGTTCGTC
CAAGAAGATGTTGCGCATGGTGGATTGTATGTCCAGGACGTTGAAGGTTG
GGTCTCTGAACACCATCAGTTTAATGTCCTTATATTCGTCGGAGAAGCCC
TGTACCGGGATGTCCTTGAAGCGGCGGTCGGAGGTGGTTTCTCCCATCTT
ATCCAGCTGGGCGCGAAAAAGGTGCTTCTGGTTGAAGCAGTCGTCGGGAT
TTTCACCAGGGTTCATGAGGTTGTTCTCCAGCTCCTCCATCTTGGCCCTG
ATGACCTCGTCCGTTACCCTGTCATAGTTGTTGTAGAGGTCATCGAAGGC
AGCTTGTCCGTCGCCTCTGATGCCAGTGTCGTCTTCGTGCTTCTGCACCG
ACGAGGCGACTGGAAATTCCACTAGGAGGAAAAGAATGGCGTAGAGATCT
TCGTTGGCCCTTGTGTAGGGGTCGAAGGCCGCTGTGTCTGCGGGATCTGG
CTTCCTTTGTTTCTTCAGTAGTAGCAGGATGTCCTTCCTGGTCACGCCTA
ACACCACGCAGAATTTCATCAATGTCTTGAACTCAGCTGAGTCCTTTCCG
TCGAATTTCTTGAGGTCTTGATCACGGTTGCCAGTATTGTACAACTATCG
CTGGCGGATGCACTCCCACCTCCTGTGTTGCTCGTTGCGGTATCCATTGC
TCGTTTCGGCATTATTTTTTTCGTCTTGATGAAAGTACTTCCTGCTGCAG
GAGTAGTTTGCTCGTGGTACTACTCCCTGTA
back to top

protein sequence of EsuBft613_12a-0001

>EsuBft613_12 ID=EsuBft613_12|Name=EsuBft613_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=45bp
MLSGSEGFEDDGLGLDASVSDDGPAGVDERCGDGASPSRRSSQVH
back to top

mRNA from alignment at Scaffold_119:38525..41334-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft613_12a-0001 ID=EsuBft613_12a-0001|Name=EsuBft613_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2810bp|location=Sequence derived from alignment at Scaffold_119:38525..41334- (Ectocarpus subulatus male Bft15b)
ATGCTGTCCGGTTCAGAGGGGTTCGAAGATGACGGGCTGGGGCTAGATGC
GTCGGTTTCGGATGATGGTCCAGCTGGCGTCGATGAAAGGTGCGGTGATG
GGGCGTCCCCGTCGCGGAGATCTTCGCAGGTACACTTCTTTCACTTTCGT
GTAGTCGTCGGTGATCTTGCACGCGTACGGGAAGTAGCCTCCTTATATTT
CGCAGGTGCATTAACAGGCCCCATGGCAATCAACGGGGCGGGAGGGGGGC
GGGAGGAAACGGCGCGGGAAGAAAGCAAGCGAGAAGAGACCGACCGTGTG
ACGTGACATGTTGCGGTTGAATTTCAGCGACTAGTTTTTCTGTTGCCCTC
TCCCCCGTTTGCTGTCGCGTTCAAACTGTCTCTACGGATATCCCTGTCTC
TGTGCGAGTTTGTTTATGTCCTCGTCTGTCTTTGGTTTATTTCGTTTTTG
TTTTGTTTTTTTACTGGCACGTACTGTTGACCCTTGGGGTCCTTCCGGAA
GGCTACCCCCCAGGCTGGTGGTGCGCACGTTCCACTTTTTATTTATTTAT
TTGTTTCTGATTCTTTTGTTTTCTTGTACTTTATCGCTTTGCTAACCCTT
GGGGTCCATTTTATTTTGGTATACCTTTTCTAGGTACGTTAGCCTGTGAC
CACGGAAATTGACCGAGTCAAGTGCTGGATTAGTACGGAGAGATTGAGAC
AGAAGGAGGTACTGGATAGAGAGACCGGGATGGTTTTTAATGTGAAGACA
ACAACAACAACAACACGTTGTCGATGACCACAAGTTGTCCAGGCCGTGAT
AGTTCGCGAGTTGATTGCTTCGGGTGGGGAGACTACTTGTGTTTCGCGAT
CTGGCAGACCCCGCAAGGGTAGAGACTGTCGCGATAGTCCACCTCGGTAC
CCGTGTCCTTCCGAAGGATGTCCAGGCTCCGAGCATTGAGATGTCCAAGC
CTCCTTTACCAGGTGTCCGCGCTCACAAGCGTCAAGCAGACGGCGTTCGC
CGTGTGGGTCTGTGACTGCTTCTGGTGGGGCATGAGGGATCTCGTGACAG
ATGGCTGGACGTTCTGCTCGAACGTGATGTCGAGGATGCACATGCCTTGG
TCTCGCGGATCTTGTGTGAGTGGAATCACCTTGCTTNTTACCAGGTGTCC
GCGCTCACAAGCGTCAAGCAGACGGCGTTCGCCGTGTGGGTCTGTGACTG
CTTCTGGTGGGGCATGAGGGATCTCGTGACAGATGGCTGGACGTTCTGCT
CGAACGTGATGTCGAGGATGCACATGCCTTGGTCTCGCGGATCTTGTGTG
AGTGGAATCACCTTGCTTTGAATAGTGAGGTGCGGAGTGCTCTCTTCGAC
CACGCAGCGCAATCCCTTTTTCAGGAGGGAGGTGGGCGAAAAAGTGTTGC
GACCAAGCCCCGGAACGATTAGTCCCTGAATCCGCACGCGCAATTGCTGT
CCTCGATTGTCCTTGAGGGTACAGTGTAGGATGCCCGTGGCCGTGCCTGT
GAGTTAACTTTTTCCGGCCACGTCGACGATCTATGGAGAGTTTCGCTGGG
TGTAATCGTGGAGGTTTCCGTTGGGGATGAGGCGATTGTCAAACATGGCC
TCCGATGCTCCCGTGTCTAACAGCAGTCCTACCCCGGTGGAGCTCGCGGC
GAAGTTGCGTCCTGAGATGCGGGAACACGTACCGAACATGAAGCCGCTGT
CGAAGGTGTCCTCATCCCGGGTGAAGTCGACAACTGCCACTTCATTGTTT
GAGTCGTTCTTGTTGGACGCCGACGAGCAGTGAGTGCCGCCGGAGCACGC
GGTGAATGCTTTTCTTGAGTCCTTGGTGTCTTCCGGACGCTTTCCTCCTT
GTTGGTAGCATGTCTCGGCCGAGTGAGACGTAGTGTTGTGCTTGGAGCAC
CACTCGGTAGCTCCGGCAGGCTTTGTTTTCTTCATCGCCCTGTTCTTGAT
CTTGGCGTAGCTCCTCCTGATGTGCCCGGGCTCGTAGCAGCTGTGGCAGA
TGATGTCAGACGCGGTCGTTGCCATGGCAAATCCTCGACCAGCTATGCGT
CCCTTCCATCCCTTGCGCGATTGTTCGTCCAAGAAGATGTTGCGCATGGT
GGATTGTATGTCCAGGACGTTGAAGGTTGGGTCTCTGAACACCATCAGTT
TAATGTCCTTATATTCGTCGGAGAAGCCCTGTACCGGGATGTCCTTGAAG
CGGCGGTCGGAGGTGGTTTCTCCCATCTTATCCAGCTGGGCGCGAAAAAG
GTGCTTCTGGTTGAAGCAGTCGTCGGGATTTTCACCAGGGTTCATGAGGT
TGTTCTCCAGCTCCTCCATCTTGGCCCTGATGACCTCGTCCGTTACCCTG
TCATAGTTGTTGTAGAGGTCATCGAAGGCAGCTTGTCCGTCGCCTCTGAT
GCCAGTGTCGTCTTCGTGCTTCTGCACCGACGAGGCGACTGGAAATTCCA
CTAGGAGGAAAAGAATGGCGTAGAGATCTTCGTTGGCCCTTGTGTAGGGG
TCGAAGGCCGCTGTGTCTGCGGGATCTGGCTTCCTTTGTTTCTTCAGTAG
TAGCAGGATGTCCTTCCTGGTCACGCCTAACACCACGCAGAATTTCATCA
ATGTCTTGAACTCAGCTGAGTCCTTTCCGTCGAATTTCTTGAGGTCTTGA
TCACGGTTGCCAGTATTGTACAACTATCGCTGGCGGATGCACTCCCACCT
CCTGTGTTGCTCGTTGCGGTATCCATTGCTCGTTTCGGCATTATTTTTTT
CGTCTTGATGAAAGTACTTCCTGCTGCAGGAGTAGTTTGCTCGTGGTACT
ACTCCCTGTA
back to top

Coding sequence (CDS) from alignment at Scaffold_119:38525..41334-

>EsuBft613_12a-0001 ID=EsuBft613_12a-0001|Name=EsuBft613_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=138bp|location=Sequence derived from alignment at Scaffold_119:38525..41334- (Ectocarpus subulatus male Bft15b)
ATGCTGTCCGGTTCAGAGGGGTTCGAAGATGACGGGCTGGGGCTAGATGC
GTCGGTTTCGGATGATGGTCCAGCTGGCGTCGATGAAAGGTGCGGTGATG
GGGCGTCCCCGTCGCGGAGATCTTCGCAGGTGCATTAA
back to top