EsuBft613_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft613_11a-0001
Unique NameEsuBft613_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_119contigScaffold_119:45846..47551 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog13735.ENSPSIP00000000063
ProteomeIdEsuBft613_11
Protein domainsSSF56672
Protein domainsPTHR19446
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl33208|Metazoa
Length104
Hectar predicted targeting categoryother localisation
Evalue2.59e-20
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,3A35Z@33154|Opisthokonta,3BQYF@33208|Metazoa,3D7GC@33213|Bilateria,48ICJ@7711|Chordata,49G95@7742|Vertebrata,4CMJX@8459|Testudines
Date last modified2016-06-15
Date creation2016-06-15
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft613_11aEsuBft613_11aEctocarpus subulatus male Bft15bgeneScaffold_119 45846..47551 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft613_11a-0001-exonagat-exon-107619Ectocarpus subulatus male Bft15bexonScaffold_119 45846..46132 +
EsuBft613_11a-0001-exonEsuBft613_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_119 46791..47551 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft613_11a-0001-exonagat-five_prime_utr-12251Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_119 45846..46056 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft613_11a-0001-cdsEsuBft613_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_119 46057..46132 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft613_11a-0001-exonagat-three_prime_utr-19193Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_119 47468..47551 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft613_11a-0001EsuBft613_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_119 46057..47467 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft613_11a-0001 ID=EsuBft613_11a-0001|Name=EsuBft613_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1048bp|location=Sequence derived from alignment at Scaffold_119:45846..47551+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTATATTTTGACCCACTTTGGTCCAAATTGTACCCACATTTGTCCACTTA
CGGACGGCGGAAATCGAGCGGAAATCGACCTCCTCGTCACCGCACGGCAG
AACATCGAATAGCCTCGGAACGTCTCAGAATCTCCCAACACGGTATCCGT
GGCATCTTTCGTATCCATCACTGCCGACTGCGGACCGACCGCGGAGGAAC
ATGTCAGATACATGCCACGTCCCTTCGGTACCGGCACGAGAGGATACCAG
GCACGGGAAGATGCCCGCGGCAAGCCCGGCAAGCAGAATAGACTACTGTT
GGCCAGGGCCGGGATTCCCGCGAAGCTGATCTTAGTCATCCGCCAATTCC
ACGATGGAATGCGGGCCCGGGTGCGCATGGACGACGGAGAACTATCGGAC
TGGTTCTTCGTGACACAGGCCGTGCGACAAGGATGTGTGCTATCCCCACT
GCTGTTCAACATCTTCTTCGCCGAGGTCCTCGAGGTCTTCGTCATCCGAT
TCAGCGAGGATGATGTTGTTCTCCGGAGCCTGGTGTGCGTGGAAGAGGGG
AACACGGAAGCGGGGGGGGGGAAGGAGACACCCCTTGACCGAGTACGGAG
GGCATGGGGGATGCTGTATGCCGATGATACCGGCGTCGTATCGAGGTCTG
CAGAAGAACTGGCGAGAATGATGACCATCATCGTTGAGGTGTTTGGGGAG
TTCGGGCTAACGGTGTCGGAGAAGAAGACGGAGACGCTCCTGATGCGCGC
AAAGGACAAGCCGACTACAACATCACAGCCCGCCCCGCCTCCACCACTGA
CCATCGAAGCCGCGGGACAGAAATACGCCCAGACGGCCGAGTTCCGGTAC
CTCGGTGGCCTCGTCAACGAACATGGCGACCTCACCCGGGAGATCAACTA
CAGGAGCAGAGGAGCGTGGGCGTGCCTCAGGCGATATGGCCGGGAGCTCT
TCGACAGACCGTAATCGCCATTCCGACTCAAGATCCGCCTGCTCCAGGCG
GAGGCGATGGAGGCAATGCTGTACGGTTGCATGACATGGTCACCACTC
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protein sequence of EsuBft613_11a-0001

>EsuBft613_11 ID=EsuBft613_11|Name=EsuBft613_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=250bp
MPRPFGTGTRGYQAREDARGKPGKQNRLLLARAGIPAKLILVIRQFHDGM
RARVRMDDGELSDWFFVTQAVRQGCVLSPLLFNIFFAEVLEVFVIRFSED
DVVLRSLVCVEEGNTEAGGGKETPLDRVRRAWGMLYADDTGVVSRSAEEL
ARMMTIIVEVFGEFGLTVSEKKTETLLMRAKDKPTTTSQPAPPPPLTIEA
AGQKYAQTAEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRP
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mRNA from alignment at Scaffold_119:45846..47551+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft613_11a-0001 ID=EsuBft613_11a-0001|Name=EsuBft613_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1706bp|location=Sequence derived from alignment at Scaffold_119:45846..47551+ (Ectocarpus subulatus male Bft15b)
CTATATTTTGACCCACTTTGGTCCAAATTGTACCCACATTTGTCCACTTA
CGGACGGCGGAAATCGAGCGGAAATCGACCTCCTCGTCACCGCACGGCAG
AACATCGAATAGCCTCGGAACGTCTCAGAATCTCCCAACACGGTATCCGT
GGCATCTTTCGTATCCATCACTGCCGACTGCGGACCGACCGCGGAGGAAC
ATGTCAGATACATGCCACGTCCCTTCGGTACCGGCACGAGAGGATACCAG
GCACGGGAAGATGCCCGCGGCAAGCCCGGCAAGCAGAGTACTAGCGGCAA
ACGCCACAAATAAATGCGTGACACACAACGGTCAACAAAACCAACGAGCG
CGCATACAGACAGAACAAAAGACGCGCATGCAGCAACAACACAGGCTATT
CGATGTTCTGCCGTGCGGTGACGTGGAGGTCGATTTCCACTTGAATTCCG
CCGTCCGTAAGTGGACAAATGTGGGTACAATTTGGACCAAAGTGGGTCAA
AATACAGACATAAGTGGGTACATGAAAAATTAGTTGACGCCGGTGGGGAT
CCCCACCGCAATGTCGGACAGAAGTGGGCACTCTGGTGAGGCCCTGCGCG
CCTCGGCGGTATTAGGGCTAAAGGTGCGCCTGAAAGTGGGGAAATATCGA
TGCCCGTGCTGTGCATGGTCCCTGGCTGTGTCGCGCAGGTGTCAGAATGG
GGTGTTGAGTCGTTTGGGGGGCCGCCTACGGAGTGTTGTGTGTGTTTTCG
AAGTATTTATTTTGGCGACAGTCCCCCCATTTTTCGTGGTGAGACGTGTA
CTACACTTTTGGAGTGCGCGCGTGCTGGATTTTCGAGTACCCACTTTTGT
CCGAGAAAGGGGTGAGTATACCCACTTGTGTCTATTTCCCTTTTTTGTTT
TGTTGATCATCGACTGCCACCCGCCACCGCACAATAGCATCGCAGATAGA
CTACTGTTGGCCAGGGCCGGGATTCCCGCGAAGCTGATCTTAGTCATCCG
CCAATTCCACGATGGAATGCGGGCCCGGGTGCGCATGGACGACGGAGAAC
TATCGGACTGGTTCTTCGTGACACAGGCCGTGCGACAAGGATGTGTGCTA
TCCCCACTGCTGTTCAACATCTTCTTCGCCGAGGTCCTCGAGGTCTTCGT
CATCCGATTCAGCGAGGATGATGTTGTTCTCCGGAGCCTGGTGTGCGTGG
AAGAGGGGAACACGGAAGCGGGGGGGGGGAAGGAGACACCCCTTGACCGA
GTACGGAGGGCATGGGGGATGCTGTATGCCGATGATACCGGCGTCGTATC
GAGGTCTGCAGAAGAACTGGCGAGAATGATGACCATCATCGTTGAGGTGT
TTGGGGAGTTCGGGCTAACGGTGTCGGAGAAGAAGACGGAGACGCTCCTG
ATGCGCGCAAAGGACAAGCCGACTACAACATCACAGCCCGCCCCGCCTCC
ACCACTGACCATCGAAGCCGCGGGACAGAAATACGCCCAGACGGCCGAGT
TCCGGTACCTCGGTGGCCTCGTCAACGAACATGGCGACCTCACCCGGGAG
ATCAACTACAGGAGCAGAGGAGCGTGGGCGTGCCTCAGGCGATATGGCCG
GGAGCTCTTCGACAGACCGTAATCGCCATTCCGACTCAAGATCCGCCTGC
TCCAGGCGGAGGCGATGGAGGCAATGCTGTACGGTTGCATGACATGGTCA
CCACTC
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Coding sequence (CDS) from alignment at Scaffold_119:45846..47551+

>EsuBft613_11a-0001 ID=EsuBft613_11a-0001|Name=EsuBft613_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=753bp|location=Sequence derived from alignment at Scaffold_119:45846..47551+ (Ectocarpus subulatus male Bft15b)
ATGCCACGTCCCTTCGGTACCGGCACGAGAGGATACCAGGCACGGGAAGA
TGCCCGCGGCAAGCCCGGCAAGCAGAATAGACTACTGTTGGCCAGGGCCG
GGATTCCCGCGAAGCTGATCTTAGTCATCCGCCAATTCCACGATGGAATG
CGGGCCCGGGTGCGCATGGACGACGGAGAACTATCGGACTGGTTCTTCGT
GACACAGGCCGTGCGACAAGGATGTGTGCTATCCCCACTGCTGTTCAACA
TCTTCTTCGCCGAGGTCCTCGAGGTCTTCGTCATCCGATTCAGCGAGGAT
GATGTTGTTCTCCGGAGCCTGGTGTGCGTGGAAGAGGGGAACACGGAAGC
GGGGGGGGGGAAGGAGACACCCCTTGACCGAGTACGGAGGGCATGGGGGA
TGCTGTATGCCGATGATACCGGCGTCGTATCGAGGTCTGCAGAAGAACTG
GCGAGAATGATGACCATCATCGTTGAGGTGTTTGGGGAGTTCGGGCTAAC
GGTGTCGGAGAAGAAGACGGAGACGCTCCTGATGCGCGCAAAGGACAAGC
CGACTACAACATCACAGCCCGCCCCGCCTCCACCACTGACCATCGAAGCC
GCGGGACAGAAATACGCCCAGACGGCCGAGTTCCGGTACCTCGGTGGCCT
CGTCAACGAACATGGCGACCTCACCCGGGAGATCAACTACAGGAGCAGAG
GAGCGTGGGCGTGCCTCAGGCGATATGGCCGGGAGCTCTTCGACAGACCG
TAA
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