EsuBft613_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft613_10a-0001
Unique NameEsuBft613_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_119contigScaffold_119:52153..52652 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft613_10
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsTRANSMEMBRANE
Protein domainsCYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length33
Hectar predicted targeting categoryother localisation
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft613_10aEsuBft613_10aEctocarpus subulatus male Bft15bgeneScaffold_119 52153..52652 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft613_10a-0001-exonagat-exon-107618Ectocarpus subulatus male Bft15bexonScaffold_119 52153..52464 +
EsuBft613_10a-0001-exonEsuBft613_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_119 52632..52652 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft613_10a-0001-cdsEsuBft613_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_119 52153..52464 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft613_10a-0001EsuBft613_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_119 52153..52652 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft613_10a-0001 ID=EsuBft613_10a-0001|Name=EsuBft613_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=333bp|location=Sequence derived from alignment at Scaffold_119:52153..52652+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGGAAGGGAAGACCGGTCTCTACGACGAAGGCTTGATGCAAGTCGA
GTACGCCGTGCTGTTCCCGTGCAACACCTTCGCGATGATGCAAGTCGCCA
GCTTCTGGGTATCGGGCCTGCCATCCCAACTGCTTCCGGCCGAGAGCTAC
GCGGCGAGGCTGAAGAACGCCTCTGAACAGCGCAACATAATCCTTGTCCT
CGGAACCTTGAACGCCTCGACGGTTTCAGGTTCAGGAATCCTCACCATCT
TGTTTCCGTACTCGGCCAAAGTGGCCGCGGATACGTTCATGGCTTTGGGG
TCAATCACTGTGGTGGTCGAATTCACCCAATGA
back to top

protein sequence of EsuBft613_10a-0001

>EsuBft613_10 ID=EsuBft613_10|Name=EsuBft613_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=110bp
MREGKTGLYDEGLMQVEYAVLFPCNTFAMMQVASFWVSGLPSQLLPAESY
AARLKNASEQRNIILVLGTLNASTVSGSGILTILFPYSAKVAADTFMALG
SITVVVEFTQ
back to top

mRNA from alignment at Scaffold_119:52153..52652+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft613_10a-0001 ID=EsuBft613_10a-0001|Name=EsuBft613_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=500bp|location=Sequence derived from alignment at Scaffold_119:52153..52652+ (Ectocarpus subulatus male Bft15b)
ATGCGGGAAGGGAAGACCGGTCTCTACGACGAAGGCTTGATGCAAGTCGA
GTACGCCGTGCTGTTCCCGTGCAACACCTTCGCGATGATGCAAGTCGCCA
GCTTCTGGGTATCGGGCCTGCCATCCCAACTGCTTCCGGCCGAGAGCTAC
GCGGCGAGGCTGAAGAACGCCTCTGAACAGCGCAACATAATCCTTGTCCT
CGGAACCTTGAACGCCTCGACGGTTTCAGGTTCAGGAATCCTCACCATCT
TGTTTCCGTACTCGGCCAAAGTGGCCGCGGATACGTTCATGGCTTTGGGG
TCAATCACTGTGGTAAGCGTCTCACGGTCTCTGGCACGCACGTATGTGCA
ATATGAACTCCGGAGTGTACACCCAAGGGTCTTGAGATGCCTCCTCTTAT
CTCTACAACTTGTGCAAAAAGCGCATGGTTTTGTCAGTGCATCACATTCC
CCTGTGGGTAAGGGTTGCTGGGAGTACAGGTGGTCGAATTCACCCAATGA
back to top

Coding sequence (CDS) from alignment at Scaffold_119:52153..52652+

>EsuBft613_10a-0001 ID=EsuBft613_10a-0001|Name=EsuBft613_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=333bp|location=Sequence derived from alignment at Scaffold_119:52153..52652+ (Ectocarpus subulatus male Bft15b)
ATGCGGGAAGGGAAGACCGGTCTCTACGACGAAGGCTTGATGCAAGTCGA
GTACGCCGTGCTGTTCCCGTGCAACACCTTCGCGATGATGCAAGTCGCCA
GCTTCTGGGTATCGGGCCTGCCATCCCAACTGCTTCCGGCCGAGAGCTAC
GCGGCGAGGCTGAAGAACGCCTCTGAACAGCGCAACATAATCCTTGTCCT
CGGAACCTTGAACGCCTCGACGGTTTCAGGTTCAGGAATCCTCACCATCT
TGTTTCCGTACTCGGCCAAAGTGGCCGCGGATACGTTCATGGCTTTGGGG
TCAATCACTGTGGTGGTCGAATTCACCCAATGA
back to top