EsuBft5994_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft5994_2a-0001
Unique Name	EsuBft5994_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_265	contig	Scaffold_265:41020..42272 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft5994_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	125
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft5994_2a	EsuBft5994_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_265 41020..42272 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft5994_2a-0001-exon	EsuBft5994_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_265 41020..42272 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft5994_2a-0001-cds	EsuBft5994_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_265 41020..41349 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft5994_2a-0001-exon	agat-three_prime_utr-18980	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_265 41350..42272 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft5994_2a-0001	EsuBft5994_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_265 41020..41349 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_265:41020..42272+
coding sequence from alignment at Scaffold_265:41020..42272+

spliced messenger RNA

>EsuBft5994_2a-0001 ID=EsuBft5994_2a-0001|Name=EsuBft5994_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1253bp|location=Sequence derived from alignment at Scaffold_265:41020..42272+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGCATCTTGTCTCAACCCGCGTGCAATCCCGCATACGCGGTGTAC
CTATGCCCTCGGTGCTCTTATCCAGGTCCTCCCGTTTACAGTTCGCAGCA
CACATCTACAACGCGTACACGGCCGAAATCCAGCCGTTGTTGATGCCCCG
CGGCTTCGGGCCGACGCTCTAAAGTTTTGGTACCCGGTCGGGCTGCGATT
TCAGGGCCCGGCGTACAACGGGGAGAGACGTGGAGCCGAGTTTCCAACCT
CTGGAGGGAGTCCGCCCTTGTGTGCTTCTCGAGATCGTCAACATCTGGGG
GCCACACCGACACCTGACACCCCCAGGTGACCGCTCTCTCAACGAAAACG
AGCCTTCCATAGCCCTAACAACTCCTCAAGTTCGCACGGGTCTGTAGAAG
ATGGAGTCGTGTTCGATCCCAGCTGAGGCCAGTTGCCCTTTTCGCATCTG
TTTTTCTTTTCCCGGCAGCCTTGGTCCTCCTTTGTGGCATTCTCACATAC
TGCAGCAATTTACCGTCGAAGAACACGTTTTACAAATTTCTTCCCGTTAT
GCAGGTTTTGGACATTGAAACCGGTACGCGTATTCACGCTTGTTGATACT
CATAACGGGCCTTGAAAGGTAAACTACGCGGGGTGCAGCAAGCACGTTCT
GGACGTTACTTGGGGCACTGGGTAGTCGGCCGTGTTAGACCGGGAGAGAG
AGGTTGAGAGAGAGCTGGAGAGAGAGTGGGAGAAGGAACCTTGATTGGAG
AGAGACGGTGGTGGTGGTGGAGAGAGAGGGTGGTGGTGGTGGAGAGAGAC
GGTGGTGGTGGTGGAGAGAGAGAGGGAAGAAGTGCGCAGCACGCACGCAA
GCTCCATCGCACCAACCACGCCAAAAGGATCCCCGTGACTGCACCGGTGG
TACCCTACTACACACGAAATTCCCAACACGTATCCCCTGGGATCCTCACG
ACCAGATACTGCTGCGAGTATATCTAACATCCCCCCTGCTCGCAACAGTC
TCTCACTGAAAACTTCGCTAACACCCGATATCTCAACCAAAAGACGTCTT
TCCCAGACGATATGCCACCAAGACTTTACCAGAATAACATAAGAGAGAGA
AAAACAATTCAAAGGAATATGAATGCTGCATCGCGCGTAACAAATACTTG
GCGCGGGAAATGAAAGAAAACGGGAAACAAAACGAGAAGCAAAACAAAAC
CAAAACACAACCTATCAGAAAAACAACAAAATGTTCATGCCGAATTCATC
GCA

protein sequence of EsuBft5994_2a-0001

>EsuBft5994_2 ID=EsuBft5994_2|Name=EsuBft5994_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=109bp
MSASCLNPRAIPHTRCTYALGALIQVLPFTVRSTHLQRVHGRNPAVVDAP
RLRADALKFWYPVGLRFQGPAYNGERRGAEFPTSGGSPPLCASRDRQHLG
ATPTPDTPR

mRNA from alignment at Scaffold_265:41020..42272+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft5994_2a-0001 ID=EsuBft5994_2a-0001|Name=EsuBft5994_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1253bp|location=Sequence derived from alignment at Scaffold_265:41020..42272+ (Ectocarpus subulatus male Bft15b)
ATGTCAGCATCTTGTCTCAACCCGCGTGCAATCCCGCATACGCGGTGTAC
CTATGCCCTCGGTGCTCTTATCCAGGTCCTCCCGTTTACAGTTCGCAGCA
CACATCTACAACGCGTACACGGCCGAAATCCAGCCGTTGTTGATGCCCCG
CGGCTTCGGGCCGACGCTCTAAAGTTTTGGTACCCGGTCGGGCTGCGATT
TCAGGGCCCGGCGTACAACGGGGAGAGACGTGGAGCCGAGTTTCCAACCT
CTGGAGGGAGTCCGCCCTTGTGTGCTTCTCGAGATCGTCAACATCTGGGG
GCCACACCGACACCTGACACCCCCAGGTGACCGCTCTCTCAACGAAAACG
AGCCTTCCATAGCCCTAACAACTCCTCAAGTTCGCACGGGTCTGTAGAAG
ATGGAGTCGTGTTCGATCCCAGCTGAGGCCAGTTGCCCTTTTCGCATCTG
TTTTTCTTTTCCCGGCAGCCTTGGTCCTCCTTTGTGGCATTCTCACATAC
TGCAGCAATTTACCGTCGAAGAACACGTTTTACAAATTTCTTCCCGTTAT
GCAGGTTTTGGACATTGAAACCGGTACGCGTATTCACGCTTGTTGATACT
CATAACGGGCCTTGAAAGGTAAACTACGCGGGGTGCAGCAAGCACGTTCT
GGACGTTACTTGGGGCACTGGGTAGTCGGCCGTGTTAGACCGGGAGAGAG
AGGTTGAGAGAGAGCTGGAGAGAGAGTGGGAGAAGGAACCTTGATTGGAG
AGAGACGGTGGTGGTGGTGGAGAGAGAGGGTGGTGGTGGTGGAGAGAGAC
GGTGGTGGTGGTGGAGAGAGAGAGGGAAGAAGTGCGCAGCACGCACGCAA
GCTCCATCGCACCAACCACGCCAAAAGGATCCCCGTGACTGCACCGGTGG
TACCCTACTACACACGAAATTCCCAACACGTATCCCCTGGGATCCTCACG
ACCAGATACTGCTGCGAGTATATCTAACATCCCCCCTGCTCGCAACAGTC
TCTCACTGAAAACTTCGCTAACACCCGATATCTCAACCAAAAGACGTCTT
TCCCAGACGATATGCCACCAAGACTTTACCAGAATAACATAAGAGAGAGA
AAAACAATTCAAAGGAATATGAATGCTGCATCGCGCGTAACAAATACTTG
GCGCGGGAAATGAAAGAAAACGGGAAACAAAACGAGAAGCAAAACAAAAC
CAAAACACAACCTATCAGAAAAACAACAAAATGTTCATGCCGAATTCATC
GCA

Coding sequence (CDS) from alignment at Scaffold_265:41020..42272+

>EsuBft5994_2a-0001 ID=EsuBft5994_2a-0001|Name=EsuBft5994_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=330bp|location=Sequence derived from alignment at Scaffold_265:41020..42272+ (Ectocarpus subulatus male Bft15b)
ATGTCAGCATCTTGTCTCAACCCGCGTGCAATCCCGCATACGCGGTGTAC
CTATGCCCTCGGTGCTCTTATCCAGGTCCTCCCGTTTACAGTTCGCAGCA
CACATCTACAACGCGTACACGGCCGAAATCCAGCCGTTGTTGATGCCCCG
CGGCTTCGGGCCGACGCTCTAAAGTTTTGGTACCCGGTCGGGCTGCGATT
TCAGGGCCCGGCGTACAACGGGGAGAGACGTGGAGCCGAGTTTCCAACCT
CTGGAGGGAGTCCGCCCTTGTGTGCTTCTCGAGATCGTCAACATCTGGGG
GCCACACCGACACCTGACACCCCCAGGTGA