EsuBft597_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft597_9a-0001
Unique Name	EsuBft597_9a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_38	contig	Scaffold_38:126252..127956 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D8LN28
ProteomeId	EsuBft597_9
Protein domains	Coil
Protein domains	PTHR19303
Protein domains	IPR004875
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	170
Hectar predicted targeting category	other localisation
Evalue	6.26e-41
EggNOG OGs	2CZS4@1\|root,2SBGG@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
Description	DDE superfamily endonuclease
COG category	S

Cross References

External references for this mRNA


Database	Accession
GO	0003676

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft597_9a	EsuBft597_9a	Ectocarpus subulatus male Bft15b	gene	Scaffold_38 126252..127956 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft597_9a-0001-exon	EsuBft597_9a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_38 126252..127956 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft597_9a-0001-exon	agat-five_prime_utr-12070	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_38 126252..126401 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft597_9a-0001-cds	EsuBft597_9a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_38 126402..127544 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft597_9a-0001-exon	agat-three_prime_utr-18949	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_38 127545..127956 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft597_9a-0001	EsuBft597_9	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_38 126402..127544 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_38:126252..127956+
coding sequence from alignment at Scaffold_38:126252..127956+

spliced messenger RNA

>EsuBft597_9a-0001 ID=EsuBft597_9a-0001|Name=EsuBft597_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1705bp|location=Sequence derived from alignment at Scaffold_38:126252..127956+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AAGGTACAAAGTCGGGGAAGGCTATCGTGCCAACGCACCAAGGTGCCCGG
CGCGAGGCGCTCCAACTCGCGAGAAAATACGACGGTGGTCGCCAGCATCG
GCGCCGATGGCCACACATACAACCCTATTAGGATCTACAAAGGCCAGCGT
ATGCAACCCGCTTGGATCCAGGACAAGAACGGCGTCCCCGATGCGAAGTA
CACCGTCACGGAGTCATCCTTCATCCAGAGCCACGTGTTCCTCGACTACC
TTCGAGACCTCCGCGAACAGCTCGATGCACGCGGCTTGCAGGGCAAAGTT
GCCCTTGTGCTCGACGGCCACGCCTCGCACACGACCTTCGACGCCATCAG
CTTGGCCATCTCTCTGGACATCGACCTCTTCCAGCTCCCGTCCCACACAT
CGCACATCACCCAGCCCCTGGACGTTGGTATATTCGGAACCTTCAAGAAG
GAGCTCACCAGGGTGCTCACGGCCTACCCACTGAAAATCGGGGGGAGGAG
TCCGGTGAAGCGAGACATGGCTGGCGTGATTGCGGAGGCATGGAGAGGGA
GCTTCACGCCTGCGAATAACATGGCGGCGTTTAAAGGGGCGGGCTTGTGG
CCGGTGAACATGGAGAAGGCCATCAACCGACTACATAGCAAGAGGAAGCA
ACGGGAGAATGTCCGCCCTATGCCTGAAGACCTCGCCGTCGTTGCCTCCA
AGGAACAGCTCGAACAAGACCTCGGCCGCGCTGCCCTCCTTGAGCTGGAA
AGGCAGGGATTGATGATCGAGGGGCTCCGGGTGAACACCGTTTTCCTCGG
CGGGCTCACCCGCCTCACCAAGCGCTCCAAGTCTTTCGCGACCGTTCGGT
CGGGCGGGGGGAAGTCCGAGGGCGGTCTCCTGTCCGCCGAAGAACACCTT
GCTAACGCCAGGAAGGACAAAGAAGAGAAGGAGGCAAGAGCAAGAAAAGG
CGGACAACGCCAAGGCACGTACAGAGGCAAGGGCAGCGAGGGAGGCCAAT
CTTGGGCAGGGCGGCGGGCGGAGCGGCGGGCGGAGCGGCGGGCGGGGAGC
TGGAGGGAGAGGCGCAGGGAGGAGTGGGGTGCGGGGAGAGGGAAGGGGCG
GGGGGCGGNNNNNNNNNNNNGGAGAGGGAAGGAGGGCTGGTGGGCGGGTG
AGGGCCGGTGCTCGGTTCCAAGGAGGAGCGGGACGGCCGAGAGGGGCGGT
GGTTCCCTTGGTTCAGTCGCCACCGCCGGCGGCCCCTTTTTCCTCTCGAG
GACGGCACCGAACCCCGATACCAATCGTCGATGTGTAGACTAGATGCTGT
ACGGTTATCGTTTTTTTATTCGAGTGAAAGATTAATTATTCGAGTGAGAC
ATACAGAAAACGTCAGATGAGTGTCGAGGTGCCGATATGCATTCCAGGGT
TGTACTTGAACAGCTTTTGGGGGTAGTTTTCGAGCGTCCCACGCGGGGGA
GCGGGGATGGGGGCTGTAGAGGTGTTTTCCAGAACCCCGGGGACGTTGAA
ATACTGTCCCCGGGCCTGAAGGGCTATTGTTTTTTTTTGCTGCTTCGCGA
CTTGAGTTGATCGTCTTGTACGGACCTTTCGACGGGGCGTTCGAGTGGTG
GGAAACAGGTGCGATTTTCTGCGAGAAGTCTCACCGCAGTGCCAAGCTGC
TTTTGCCTGGCCCAGTTCACGTGCTTGAATGTATGTAGTCTATGTAAAGA
GGTCG

protein sequence of EsuBft597_9a-0001

>EsuBft597_9 ID=EsuBft597_9|Name=EsuBft597_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=380bp
MQPAWIQDKNGVPDAKYTVTESSFIQSHVFLDYLRDLREQLDARGLQGKV
ALVLDGHASHTTFDAISLAISLDIDLFQLPSHTSHITQPLDVGIFGTFKK
ELTRVLTAYPLKIGGRSPVKRDMAGVIAEAWRGSFTPANNMAAFKGAGLW
PVNMEKAINRLHSKRKQRENVRPMPEDLAVVASKEQLEQDLGRAALLELE
RQGLMIEGLRVNTVFLGGLTRLTKRSKSFATVRSGGGKSEGGLLSAEEHL
ANARKDKEEKEARARKGGQRQGTYRGKGSEGGQSWAGRRAERRAERRAGS
WRERRREEWGAGRGKGRGAXXXXXRGKEGWWAGEGRCSVPRRSGTAERGG
GSLGSVATAGGPFFLSRTAPNPDTNRRCVD

mRNA from alignment at Scaffold_38:126252..127956+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft597_9a-0001 ID=EsuBft597_9a-0001|Name=EsuBft597_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1705bp|location=Sequence derived from alignment at Scaffold_38:126252..127956+ (Ectocarpus subulatus male Bft15b)
AAGGTACAAAGTCGGGGAAGGCTATCGTGCCAACGCACCAAGGTGCCCGG
CGCGAGGCGCTCCAACTCGCGAGAAAATACGACGGTGGTCGCCAGCATCG
GCGCCGATGGCCACACATACAACCCTATTAGGATCTACAAAGGCCAGCGT
ATGCAACCCGCTTGGATCCAGGACAAGAACGGCGTCCCCGATGCGAAGTA
CACCGTCACGGAGTCATCCTTCATCCAGAGCCACGTGTTCCTCGACTACC
TTCGAGACCTCCGCGAACAGCTCGATGCACGCGGCTTGCAGGGCAAAGTT
GCCCTTGTGCTCGACGGCCACGCCTCGCACACGACCTTCGACGCCATCAG
CTTGGCCATCTCTCTGGACATCGACCTCTTCCAGCTCCCGTCCCACACAT
CGCACATCACCCAGCCCCTGGACGTTGGTATATTCGGAACCTTCAAGAAG
GAGCTCACCAGGGTGCTCACGGCCTACCCACTGAAAATCGGGGGGAGGAG
TCCGGTGAAGCGAGACATGGCTGGCGTGATTGCGGAGGCATGGAGAGGGA
GCTTCACGCCTGCGAATAACATGGCGGCGTTTAAAGGGGCGGGCTTGTGG
CCGGTGAACATGGAGAAGGCCATCAACCGACTACATAGCAAGAGGAAGCA
ACGGGAGAATGTCCGCCCTATGCCTGAAGACCTCGCCGTCGTTGCCTCCA
AGGAACAGCTCGAACAAGACCTCGGCCGCGCTGCCCTCCTTGAGCTGGAA
AGGCAGGGATTGATGATCGAGGGGCTCCGGGTGAACACCGTTTTCCTCGG
CGGGCTCACCCGCCTCACCAAGCGCTCCAAGTCTTTCGCGACCGTTCGGT
CGGGCGGGGGGAAGTCCGAGGGCGGTCTCCTGTCCGCCGAAGAACACCTT
GCTAACGCCAGGAAGGACAAAGAAGAGAAGGAGGCAAGAGCAAGAAAAGG
CGGACAACGCCAAGGCACGTACAGAGGCAAGGGCAGCGAGGGAGGCCAAT
CTTGGGCAGGGCGGCGGGCGGAGCGGCGGGCGGAGCGGCGGGCGGGGAGC
TGGAGGGAGAGGCGCAGGGAGGAGTGGGGTGCGGGGAGAGGGAAGGGGCG
GGGGGCGGNNNNNNNNNNNNGGAGAGGGAAGGAGGGCTGGTGGGCGGGTG
AGGGCCGGTGCTCGGTTCCAAGGAGGAGCGGGACGGCCGAGAGGGGCGGT
GGTTCCCTTGGTTCAGTCGCCACCGCCGGCGGCCCCTTTTTCCTCTCGAG
GACGGCACCGAACCCCGATACCAATCGTCGATGTGTAGACTAGATGCTGT
ACGGTTATCGTTTTTTTATTCGAGTGAAAGATTAATTATTCGAGTGAGAC
ATACAGAAAACGTCAGATGAGTGTCGAGGTGCCGATATGCATTCCAGGGT
TGTACTTGAACAGCTTTTGGGGGTAGTTTTCGAGCGTCCCACGCGGGGGA
GCGGGGATGGGGGCTGTAGAGGTGTTTTCCAGAACCCCGGGGACGTTGAA
ATACTGTCCCCGGGCCTGAAGGGCTATTGTTTTTTTTTGCTGCTTCGCGA
CTTGAGTTGATCGTCTTGTACGGACCTTTCGACGGGGCGTTCGAGTGGTG
GGAAACAGGTGCGATTTTCTGCGAGAAGTCTCACCGCAGTGCCAAGCTGC
TTTTGCCTGGCCCAGTTCACGTGCTTGAATGTATGTAGTCTATGTAAAGA
GGTCG

Coding sequence (CDS) from alignment at Scaffold_38:126252..127956+

>EsuBft597_9a-0001 ID=EsuBft597_9a-0001|Name=EsuBft597_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1143bp|location=Sequence derived from alignment at Scaffold_38:126252..127956+ (Ectocarpus subulatus male Bft15b)
ATGCAACCCGCTTGGATCCAGGACAAGAACGGCGTCCCCGATGCGAAGTA
CACCGTCACGGAGTCATCCTTCATCCAGAGCCACGTGTTCCTCGACTACC
TTCGAGACCTCCGCGAACAGCTCGATGCACGCGGCTTGCAGGGCAAAGTT
GCCCTTGTGCTCGACGGCCACGCCTCGCACACGACCTTCGACGCCATCAG
CTTGGCCATCTCTCTGGACATCGACCTCTTCCAGCTCCCGTCCCACACAT
CGCACATCACCCAGCCCCTGGACGTTGGTATATTCGGAACCTTCAAGAAG
GAGCTCACCAGGGTGCTCACGGCCTACCCACTGAAAATCGGGGGGAGGAG
TCCGGTGAAGCGAGACATGGCTGGCGTGATTGCGGAGGCATGGAGAGGGA
GCTTCACGCCTGCGAATAACATGGCGGCGTTTAAAGGGGCGGGCTTGTGG
CCGGTGAACATGGAGAAGGCCATCAACCGACTACATAGCAAGAGGAAGCA
ACGGGAGAATGTCCGCCCTATGCCTGAAGACCTCGCCGTCGTTGCCTCCA
AGGAACAGCTCGAACAAGACCTCGGCCGCGCTGCCCTCCTTGAGCTGGAA
AGGCAGGGATTGATGATCGAGGGGCTCCGGGTGAACACCGTTTTCCTCGG
CGGGCTCACCCGCCTCACCAAGCGCTCCAAGTCTTTCGCGACCGTTCGGT
CGGGCGGGGGGAAGTCCGAGGGCGGTCTCCTGTCCGCCGAAGAACACCTT
GCTAACGCCAGGAAGGACAAAGAAGAGAAGGAGGCAAGAGCAAGAAAAGG
CGGACAACGCCAAGGCACGTACAGAGGCAAGGGCAGCGAGGGAGGCCAAT
CTTGGGCAGGGCGGCGGGCGGAGCGGCGGGCGGAGCGGCGGGCGGGGAGC
TGGAGGGAGAGGCGCAGGGAGGAGTGGGGTGCGGGGAGAGGGAAGGGGCG
GGGGGCGGNNNNNNNNNNNNGGAGAGGGAAGGAGGGCTGGTGGGCGGGTG
AGGGCCGGTGCTCGGTTCCAAGGAGGAGCGGGACGGCCGAGAGGGGCGGT
GGTTCCCTTGGTTCAGTCGCCACCGCCGGCGGCCCCTTTTTCCTCTCGAG
GACGGCACCGAACCCCGATACCAATCGTCGATGTGTAGACTAG