EsuBft597_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft597_8a-0001
Unique NameEsuBft597_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_38contigScaffold_38:131653..137556 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FN82
ProteomeIdEsuBft597_8
Protein domainsTMhelix
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl2759|Eukaryota
Length113
Hectar predicted targeting categorychloroplast
Evalue8.36e-160
EggNOG OGs28KDC@1|root,2QSU6@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-15_003310.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft597_8aEsuBft597_8aEctocarpus subulatus male Bft15bgeneScaffold_38 131653..137556 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft597_8a-0001EsuBft597_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_38 131679..137248 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft597_8a-0001-exonagat-exon-44291Ectocarpus subulatus male Bft15bexonScaffold_38 131653..131851 +
EsuBft597_8a-0001-exonagat-exon-44288Ectocarpus subulatus male Bft15bexonScaffold_38 132893..133072 +
EsuBft597_8a-0001-exonEsuBft597_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_38 133901..134078 +
EsuBft597_8a-0001-exonagat-exon-44290Ectocarpus subulatus male Bft15bexonScaffold_38 136557..136679 +
EsuBft597_8a-0001-exonagat-exon-44289Ectocarpus subulatus male Bft15bexonScaffold_38 137099..137556 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft597_8a-0001-exonagat-five_prime_utr-12069Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_38 131653..131678 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft597_8a-0001-cdsEsuBft597_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_38 131679..131851 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft597_8a-0001-exonagat-three_prime_utr-18948Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_38 137249..137556 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft597_8a-0001 ID=EsuBft597_8a-0001|Name=EsuBft597_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1138bp|location=Sequence derived from alignment at Scaffold_38:131653..137556+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GAACATCCTCAAGCAGCAGACGAACCATGGCCTCCTACTGTGCCCACGGA
ACGATAGCGCCCCTAGTTGGGTTGCTACTGCTGATGGCGTCGTATTCCGA
AGCGTTCGTCACCCCGACGCTGTCCCAGGCACGCGCGCGTCTGATGATCT
CTGCCGACGTGTCCAGGCGGAGCCATTCCGCCGCGTTTGAGAGCAGCTGG
CCGCGGTTGCCGGCGGCAAGAGCGGGAAGGGGCCGCAGCGGTAGCGGCGG
CCTGCGGCCGCGCATGCAGGGCGCACCGGCTGCGGCGGCGCTCGAGACGA
TCGAAGACGCGCAGACGGTGATCGTTCGAGCGGCAGAGACGAGAGACGTC
GATCCGGACACCGTCATCGAGGCCATCCGGCTGATCGAAAAGTCGGGGGG
GAGCAAGAAGCCGCTCGAGGGAAGGGACAGCTCGCAGCCCAAGTTCGACC
TGCTCACGGACAACGGGAACTGGCGCCTCATCTTCACCACCGGGGACGTA
AAGACGCAGAAAAAACTCGGCGGAAAGATTTCGTACGTGCCGATCAAGGC
AGTCCAGGTCTTCAACCCCGACTACACGATCACGAACGGCGTCTACCTCG
GCTCCTTCCCGGTTCTCAAGTTCTCCGGCACTTTCACCTGGGCCGAGGAG
ACGGCCCGCCTCGAGTTCACCTTCAACGAGGTCGGGGTCCTCGGGCTTAA
TTTTCCGTACAACCAGGGGGAGAGCAAGGTGCCGCCGGGTTTCACCTTCA
TGGACATCTCGGACCGTTACGTTATCGCTCGCGGGGCCGGCGGCGGGCTC
GCCCTGTGGCTTCGGCAAGATACCGTGTAAAAACCGGTGCTTCGTTGATG
GGCCAGTCCATTGCACCGCAAACGGGGCTGCTCGATTCGATGGCAGTGGG
GGGAGGGGGGCGCGCGGCAGTGCTGCAATGTGCCAGCCGGCACTACATCA
GGCACGCGGCACTATTGATCCCCCACCGTTCTGTTCACGGTCTTGGGTGT
TGAAGCTCGTGAGGGCTCAATCTTGGCCGGGCTGGATGCTCTGACGGACG
TGCTGGCCGGGTTGTCTTTGGTTGTTCGCGTGGAATCAGGCGCTGACATT
TCGGAGGGGGGTCCAACCCCCCCCCCTCCTATGTGACC
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protein sequence of EsuBft597_8a-0001

>EsuBft597_8 ID=EsuBft597_8|Name=EsuBft597_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=267bp
MASYCAHGTIAPLVGLLLLMASYSEAFVTPTLSQARARLMISADVSRRSH
SAAFESSWPRLPAARAGRGRSGSGGLRPRMQGAPAAAALETIEDAQTVIV
RAAETRDVDPDTVIEAIRLIEKSGGSKKPLEGRDSSQPKFDLLTDNGNWR
LIFTTGDVKTQKKLGGKISYVPIKAVQVFNPDYTITNGVYLGSFPVLKFS
GTFTWAEETARLEFTFNEVGVLGLNFPYNQGESKVPPGFTFMDISDRYVI
ARGAGGGLALWLRQDTV
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mRNA from alignment at Scaffold_38:131653..137556+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft597_8a-0001 ID=EsuBft597_8a-0001|Name=EsuBft597_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5904bp|location=Sequence derived from alignment at Scaffold_38:131653..137556+ (Ectocarpus subulatus male Bft15b)
GAACATCCTCAAGCAGCAGACGAACCATGGCCTCCTACTGTGCCCACGGA
ACGATAGCGCCCCTAGTTGGGTTGCTACTGCTGATGGCGTCGTATTCCGA
AGCGTTCGTCACCCCGACGCTGTCCCAGGCACGCGCGCGTCTGATGATCT
CTGCCGACGTGTCCAGGCGGAGCCATTCCGCCGCGTTTGAGAGCAGCTGG
TGAGCCTTCTATGCATACAAGCTGTGTGACCGTCCTACATAATATGGGTA
TGCACCGCAGTAGATGATAATTGTGTGGGTGGTCAACAGGCCAGAGTACG
CATCATCGGGTGATGATCCTCACGTCCAATTAACGACTCGGCAGACCGAG
TCTTGAATTTTTGAACAACATGGGTCCCCTTCAACATTCCGCACCCAGTG
TTGCTGACCGGCCTACAATACAGCAGTATTCTGCTGTCTTGTATTGTTGT
CTGGAAGAGGTGTGCCCTGCGGGAATTGGGGATAGAGATAGCGCTTATCT
GGCTTATCCCAAATTGCCACAATTGTCGAGGAGCTTTTGCAACACAGGTC
TTTCCCACGAGTGTGAAGGGTTGACCATGAAGGATGCGGGGAATTCGACA
TGTTTTGTATATATGGCAAGCGGGTTACAGAATAACGCTTTCGTTCCAAG
GTCGCGCGAATCACGGCGAAGCCAATTCCATCGGGCCTGAGGTCGACCGG
AGTTTTTCTGCCCTTGTTCTCTGCTTCGCGAAGGCAAGCTGTGTACGTCG
GCCGATGACTCAACACGGCTTGCACACGATCCACAAGTTGCCACGTAAGA
TCGAACGCAAGCAATCAACTGCGGCTTTTGATGCGTTTCTTTTTGCAAGA
GTGCGCTCATTGCAGCTCAGAAGGACCACCGACTCAAGACGGGACTCAGG
GGCATGTGCTGACCCCTCACAGCAACCAATAGCCTCACTGCTGCTGAGTT
GTAGCTGTAGTGACTGCGTCGCTCACCCAAACATTACGAAGTCGAGCCTC
AATTTACTCGCCTCCCGGGGTTTTCCCTCCGTTTCCTGCGCCGGTTTGGA
AAAATCACGGAGCTATATTTTGCGACGTAAGGCCTCCAATACGTGAACAC
CCCGTACGCGAACTTGTCGTGGTACAAAAGTTTTTTTTTCGAAAAAGGCG
AGCTCTAAACAGGACCGGCACTCGGGCTCACACACAGCGGCGATGGTAGC
ATCACAAAGCAACCACGCTCTGGTGTTTGCCTCCTGGTAGGCCGCGGTTG
CCGGCGGCAAGAGCGGGAAGGGGCCGCAGCGGTAGCGGCGGCCTGCGGCC
GCGCATGCAGGGCGCACCGGCTGCGGCGGCGCTCGAGACGATCGAAGACG
CGCAGACGGTGATCGTTCGAGCGGCAGAGACGAGAGACGTCGATCCGGAC
ACCGTCATCGAGGCCATCCGGTGAGCGCGTGTGTCGCAGTTGTATTCCCG
GCTGGCTTAAGGGGGCTGCCGCTTAGTTTCAAAGGAGAATCCTGAGATCG
TTCATTACCTCGGAGAGGGGTGTGGGCACTGTCATGCATGACCGTTAAGT
CTTCGAACCATAGATCTCCATGCACCAGGCGCTCAGGTCACGGTCGAGAG
CGGGGGGGTGGGGGATCCCGAGGCGGTTGTGCCCATCTAATCGGCAGATT
TTGAAATGGCAAGTAGCCGAAATCTCGGATACTGGCGTTTGTTATCGTTC
TACTGCTGCTCTTGATATGTGAGAGATTGGGATACGAAGTCTTTTCCCAC
TATGATGCGCTGTTTTCGCAAACAAGAGACGTGGCGACTAGAGTACCCAG
ACCCAGCCATATACTTGATCTAGGGGGGAGCAAGGAAGAATCGGGTTGCG
GTGCGGTGGGGGCAGAAGAACCACGGCCGAAGTCTACATGCGATTTTCCA
CGGCCAATGTCAACATGGGATTGCCCTGGAACATTGATCCTCCGAGACGG
ATCAAAATGCGTCAATAAACACGTGTTTGTTTTAACTTTGAAACAAACTG
GCCAGGCGAAACAACTTCTTCATGGAGCGGCTATCCAATAGTAGATGTAG
TTAACGCTACATAACCCCCCCATCCGAAATGGAAGACCTTCGAACACTGT
CCAATAACAGTTCTTCGCTTTTTTCGTCTTGCGGACGGGATTATCAAGCA
CCTCTCCGCCGTAAGTTTGTAATTTGTTGTTGGTGATGCTTCGTTTTGTG
TTGCGACAAAAACACCTGCAACAAAGAATGTCATGAATGCCGGGACAGGC
TGATCGAAAAGTCGGGGGGGAGCAAGAAGCCGCTCGAGGGAAGGGACAGC
TCGCAGCCCAAGTTCGACCTGCTCACGGACAACGGGAACTGGCGCCTCAT
CTTCACCACCGGGGACGTAAAGACGCAGAAAAAACTCGGCGGAAAGATTT
CGTACGTGCCGATCAAGGCAGTCCAGGTACAGTATACGATGTTCTAGAAA
AAATAAACGTACAATCACAAAAATATATTAATGTACCAGTTCGAGATATT
ACGACCACTTTTTTGGCATTTTTTGTTTCGGATGGCAATCTACATGGCCT
GATTTCGGAGTCCTGGCCGGTCTTCCCTCCTCAAGGGGTCTTCGAAGTGG
TCAATGCAGCGGCAGCAGTGTGTTGATGGCAAGAATGGAACGGTACGTTT
CGCTGGACATGGATCTCTTCTCTCTCCAAGCCTCGCATTTGTCTCAGTGA
AGTGCATGCGAACATGTCAAGATTAAATGTTGAATGCCGTGAAGGAGGAA
CAGAGCAGTGCGATAAAATCTTGAGTGGGTGGAATGGGTTTTTCGTCCTG
TCTAGCCAACTTTGAAGTTGTGCGGCTGCGGTTCCGAGGAAATTTTTGCA
ACGTTGAATTTATGCTACTTCGCTCCTCTACCCAGTGGATCATCCATGCC
CGCGTGCTTGGGAGGCGGACAGCTTGTTGTCAGAAGCGCAGAGAAAAACG
GTCGGCCATGGGATCTTGATATGTACAAGGCAGCGTAGAGAGAGAGCGAG
CGGGCGAGGAGCACTGTCGGGCATCCCGCCGCTCAATTTCCTTACCACAC
ACACGCATCCACGTAACCCCCATGGTCCCTGCAGATCAGCGTCGACGCCG
AGTACACCCCCAATTAGCCCCCTGTAAGGTATTCGATAACTTTTCACCAA
GTAATACGGCAATATTCTCAATAACCATTCCGAACAAACAATACCAATCC
AACCAAATCTCCCAAGGAGACATCGTTCCACGAAATCTGTTGATATCCCA
AGAAAGCGTTTCCCTACGATCTCTGAATCGTATGGTATCCGATTCTCATC
GCGTCAGCATGAACTCCCTCTAATATCCACCAACAAACAGAAAACCAGCT
TGAGAAATATTGAGAACATATCTTTCAAGACTGCGACCCCATCTTCTCCC
TATATTTTCCCAGGCCATCACAACATCGGAGTTACTCTCGGACAATACTC
AGCACAAATCAACGCACCCTACAGAGACGTGGCACAATCTTTTCTATAGA
ATTCCTGAAATTAAAACCCAATTTCAACCTGCCGACCAATTCCAAATGAA
CTTCGGAAGCCCTGAACCCTCAAGATAATCGAAACAATGTCAAACCCTTC
CTCCATTATGGTTTCAAAGTGTGGCTACAGCAGTAGATGAAGTTTCTCTC
GAAACGTCCTCCGAAACACCAAGGGAAACCTCCACGAATACCTACGGGAC
AAGAGCGACCCTACGGTGGTCCGGGCGGCCCTGAGGTGCTACACTTCAAT
GAAGTCGCTCTTGTCTACGCACGGTGGTTTTGGGCATTATTTTAACGATG
ACGGGACCAAGTGGACCCAACGAGGGCTTCCGTGGGATGCTCACCGACTT
GAGTTTAACACGGCGCGGAAGTCCTCGTTGGTCCGCCCGGTCCTGTCACC
GTTGAAAACATGCCCCAGCCCGCCGTGCGTAGCCAAGAGCGGCGGCTTTG
CTTTAAGCGCACGACGTCCGGAGCGCACAAACCACCGTACGTGCCGCTCT
TGTCCTGTAATAACACAAGCCGACCCAAGTTGCTGCTGTGGTCGTCCAAT
ATCTAGAGGAGGCAACTAGCCCGATGCCACCCGTAGGCGCCGTGTACGGC
CCCGCAAGGTCTACGAAAACTCGCTCCGTGAGCCATGACGGGTGGTAGCC
GTGAAGGGTGGACGGCCCTGGAAAAGGGTTCCTGACGAGGACGTTGATGG
GGAGGACCACGATCCACCGGTGGTGCTGCTGGTATTGCTGGCGGGGGGAC
GACCCCATTGCTGCTGTTATATTCCATCCAGAACCGAGTGACCCGTAATC
CTACTGCTGTATCGACAAATGGGTACAGAACAGTTGGGCCGCATTTCGCC
GCATCTGCGAGCACTGCGAACGCTCTACGGCCTCGCCAAGACGTCATGTC
CAACAACAGTTCCAGCGGCGGCCGCCGAAGCTGGTGTCGCTTTCGGCACC
CGCGATGCTTCCAACTTTGTGTTTTTTTTCTCTCTCTTTACTTTGATCGA
CGTCGTGACGGGTGTTGATGACGTCGACGTCACAGTCGAGGGCTGCGCCC
AGGAATGGGACCATCAGTCCTCAGCCTTCATGGCACTCTCTACGTTTCCA
CCGCCGGACCTGTCGACCCAGGCATGCGTGCCTGGCATAACTGTTGTTGT
TGAGCACTGACTTCATCGCATCGAGAAAAGGCCATCGAAAAGGCGCTACC
TTTTTACCTAGAACATGCGGTTTCGTTCGGCACTCCATCGCCATAAACTT
TGACTGGCGGTGGGATATCGGTTAGTTTCTTCGGAGATTCGTCTCTATTG
TCTCACTGTTAACAAGAGCGCAAGTGTTGCCGACCGTGCCGACGTCATCT
TCGTGGTTGACGCGCTTCGTCTCGACACATTCCTGTGTTCGGACGTTCGA
TTAGGTCTTCAACCCCGACTACACGATCACGAACGGCGTCTACCTCGGCT
CCTTCCCGGTTCTCAAGTTCTCCGGCACTTTCACCTGGGCCGAGGAGACG
GCCCGCCTCGAGTTCACCTTCAACGAGGTGGGCGGGTCGGTATGGGTTTG
CTCGAAAGACGGTACCGTAGAAATGCTTCATATTTTGTTTCTCTCATACT
GTTGCGAAGGACGTGCCATGTTTCTTGATAACGTGGGGGAAAGCGCGTTG
CGATCGTTTTCGCATCCATGCTTTCCCAAGAGGAAGGTGTTCACGTGGCT
GGCCGCTGTACACGTATGATGTGCTCGTGCTCACTGCTGTTTATGTAGGC
GGCGGGCATTTCCCTCGAAGCAGCCTCGCAAGTGTCCCACGAAATCGCCA
AGTTGCGGGTGGAGGTAGGGTTCGCCGACCGTTCACCACGCCACGCCCTA
ACGCACGCAGTTTCCTACCTCTCCTTTCCGTCGAAGATATCGCCTACCTT
CCACCCCGCCCCCAACCTTGGTCTCGTTTTTTGTGTTTTTCCTCAGGTCG
GGGTCCTCGGGCTTAATTTTCCGTACAACCAGGGGGAGAGCAAGGTGCCG
CCGGGTTTCACCTTCATGGACATCTCGGACCGTTACGTTATCGCTCGCGG
GGCCGGCGGCGGGCTCGCCCTGTGGCTTCGGCAAGATACCGTGTAAAAAC
CGGTGCTTCGTTGATGGGCCAGTCCATTGCACCGCAAACGGGGCTGCTCG
ATTCGATGGCAGTGGGGGGAGGGGGGCGCGCGGCAGTGCTGCAATGTGCC
AGCCGGCACTACATCAGGCACGCGGCACTATTGATCCCCCACCGTTCTGT
TCACGGTCTTGGGTGTTGAAGCTCGTGAGGGCTCAATCTTGGCCGGGCTG
GATGCTCTGACGGACGTGCTGGCCGGGTTGTCTTTGGTTGTTCGCGTGGA
ATCAGGCGCTGACATTTCGGAGGGGGGTCCAACCCCCCCCCCTCCTATGT
GACC
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Coding sequence (CDS) from alignment at Scaffold_38:131653..137556+

>EsuBft597_8a-0001 ID=EsuBft597_8a-0001|Name=EsuBft597_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=804bp|location=Sequence derived from alignment at Scaffold_38:131653..137556+ (Ectocarpus subulatus male Bft15b)
ATGGCCTCCTACTGTGCCCACGGAACGATAGCGCCCCTAGTTGGGTTGCT
ACTGCTGATGGCGTCGTATTCCGAAGCGTTCGTCACCCCGACGCTGTCCC
AGGCACGCGCGCGTCTGATGATCTCTGCCGACGTGTCCAGGCGGAGCCAT
TCCGCCGCGTTTGAGAGCAGCTGGCCGCGGTTGCCGGCGGCAAGAGCGGG
AAGGGGCCGCAGCGGTAGCGGCGGCCTGCGGCCGCGCATGCAGGGCGCAC
CGGCTGCGGCGGCGCTCGAGACGATCGAAGACGCGCAGACGGTGATCGTT
CGAGCGGCAGAGACGAGAGACGTCGATCCGGACACCGTCATCGAGGCCAT
CCGGCTGATCGAAAAGTCGGGGGGGAGCAAGAAGCCGCTCGAGGGAAGGG
ACAGCTCGCAGCCCAAGTTCGACCTGCTCACGGACAACGGGAACTGGCGC
CTCATCTTCACCACCGGGGACGTAAAGACGCAGAAAAAACTCGGCGGAAA
GATTTCGTACGTGCCGATCAAGGCAGTCCAGGTCTTCAACCCCGACTACA
CGATCACGAACGGCGTCTACCTCGGCTCCTTCCCGGTTCTCAAGTTCTCC
GGCACTTTCACCTGGGCCGAGGAGACGGCCCGCCTCGAGTTCACCTTCAA
CGAGGTCGGGGTCCTCGGGCTTAATTTTCCGTACAACCAGGGGGAGAGCA
AGGTGCCGCCGGGTTTCACCTTCATGGACATCTCGGACCGTTACGTTATC
GCTCGCGGGGCCGGCGGCGGGCTCGCCCTGTGGCTTCGGCAAGATACCGT
GTAA
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