EsuBft597_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft597_4a-0001
Unique NameEsuBft597_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_38contigScaffold_38:193778..195036 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft597_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length54
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft597_4aEsuBft597_4aEctocarpus subulatus male Bft15bgeneScaffold_38 193778..195036 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft597_4a-0001-exonagat-exon-44232Ectocarpus subulatus male Bft15bexonScaffold_38 193778..193832 +
EsuBft597_4a-0001-exonEsuBft597_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_38 194548..195036 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft597_4a-0001-cdsEsuBft597_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_38 193778..193832 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft597_4a-0001-exonagat-three_prime_utr-18945Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_38 194814..195036 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft597_4a-0001EsuBft597_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_38 193778..194813 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft597_4a-0001 ID=EsuBft597_4a-0001|Name=EsuBft597_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=544bp|location=Sequence derived from alignment at Scaffold_38:193778..195036+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACAAGATCGCGTCGTCGGGGAGATCTTCCCTGTGGAAAGTGCAGAC
CGTGGGTGGCAAGGAAGTAGTAACAAGGGGTGGCAGTGTCGGGGGTCTGG
GGGAACATGGGCTTGAGTGGGGGGTGCCTCAGAAAGAACAAGACGGCGGG
TGTTTCTCTCTTGGTGTGACCGGTGGCAGTATCGATCAGCAATGCCGCAC
AGACTTTTGCGCGCCCGAATATGCTTGCGACAGCTTTAACCTAACCACTT
CGGTGGAAAGCGGATTTCTGTTCGATACGGTGTCACGGATACCAGGGAAG
ACGGGGCCGAGCTTTGTTTGATTTCGGGTGGATGAGGTTGGGGTTTTGTT
CGTTTTTCTCCATCTAAGGTTCGTGTCTAGAGTTCAGCTGTAGTGTTTCA
ACCAAAGTTTTGTTTGAGTTAGAGGCAAACATTCCTAGCTATTGGGCATC
GAGTTAATTTGGCTTGGCATGACGGCCTTTACGATCGGCTTTTTATGTAT
GTCTGCGTTTATCTGCAATTGTCGGAGGGCAAACAAAATAATAA
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protein sequence of EsuBft597_4a-0001

>EsuBft597_4 ID=EsuBft597_4|Name=EsuBft597_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=106bp
MHKIASSGRSSLWKVQTVGGKEVVTRGGSVGGLGEHGLEWGVPQKEQDGG
CFSLGVTGGSIDQQCRTDFCAPEYACDSFNLTTSVESGFLFDTVSRIPGK
TGPSFV
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mRNA from alignment at Scaffold_38:193778..195036+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft597_4a-0001 ID=EsuBft597_4a-0001|Name=EsuBft597_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1259bp|location=Sequence derived from alignment at Scaffold_38:193778..195036+ (Ectocarpus subulatus male Bft15b)
ATGCACAAGATCGCGTCGTCGGGGAGATCTTCCCTGTGGAAAGTGCAGAC
CGTGGGTATACCGTCCGCCAGCATACTGTACCCCAACTGAAAATCCCTCG
CGGATCGTGGATAGGACTCCTTTGAGAAATGATGCCAGGACTCGTAACGT
TTCCCAAGGATGTACGAAAAAACAAACTGCACACATATGTACCCAGTGCC
ACCCAATTTCCTATTTTGGAGTTTTTTCGGGGGGGAGGATAAGCCAGCAC
AATTCCTTATGGAAAGCAACCAAGACATATGCATCCAGTAGCCACTATGG
CAAACCGGTCGTCCCGGTGGTCTAGGTGGTATCTTCGAAGCCTTCAAGAG
GTCAGGCTAGGGGTTCAAATCCCGGAGTATGCGAGCTTTTCTTGCAAAGT
GAGTTTTTCTCTCGCTTCCGCTCATGGCCTAGTGGTCTAGTGGATAGCAC
TAGCTCGTGTGTGTGTGCACAGAGGGAAGAAAGTGCTGAACTCTTCTCGC
ATTAAAAATCGAAGGCAATGTACCGCAGGAGGGGAGGGTAGAGAGGGGCA
CTTCTGTGTGACCACGGGTTGGAGTAAACGGCACTAGTGCTGTGAGCATT
GATTTGAAGTGAGGACCAAAAAAACAAATGTGCAAGGACATCAACGCAGT
AGTTTTTTAGCAAGCTTACGAACGCATATAGGAACCTAACCACTTCGGTG
GAAAGCGGATTTCTGTTCGATACGGTGTCGGGAGTGCTGAGGGGGGAGGG
CTTGGCCCTTGTGGTTGCAGGTGGCAAGGAAGTAGTAACAAGGGGTGGCA
GTGTCGGGGGTCTGGGGGAACATGGGCTTGAGTGGGGGGTGCCTCAGAAA
GAACAAGACGGCGGGTGTTTCTCTCTTGGTGTGACCGGTGGCAGTATCGA
TCAGCAATGCCGCACAGACTTTTGCGCGCCCGAATATGCTTGCGACAGCT
TTAACCTAACCACTTCGGTGGAAAGCGGATTTCTGTTCGATACGGTGTCA
CGGATACCAGGGAAGACGGGGCCGAGCTTTGTTTGATTTCGGGTGGATGA
GGTTGGGGTTTTGTTCGTTTTTCTCCATCTAAGGTTCGTGTCTAGAGTTC
AGCTGTAGTGTTTCAACCAAAGTTTTGTTTGAGTTAGAGGCAAACATTCC
TAGCTATTGGGCATCGAGTTAATTTGGCTTGGCATGACGGCCTTTACGAT
CGGCTTTTTATGTATGTCTGCGTTTATCTGCAATTGTCGGAGGGCAAACA
AAATAATAA
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Coding sequence (CDS) from alignment at Scaffold_38:193778..195036+

>EsuBft597_4a-0001 ID=EsuBft597_4a-0001|Name=EsuBft597_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=321bp|location=Sequence derived from alignment at Scaffold_38:193778..195036+ (Ectocarpus subulatus male Bft15b)
ATGCACAAGATCGCGTCGTCGGGGAGATCTTCCCTGTGGAAAGTGCAGAC
CGTGGGTGGCAAGGAAGTAGTAACAAGGGGTGGCAGTGTCGGGGGTCTGG
GGGAACATGGGCTTGAGTGGGGGGTGCCTCAGAAAGAACAAGACGGCGGG
TGTTTCTCTCTTGGTGTGACCGGTGGCAGTATCGATCAGCAATGCCGCAC
AGACTTTTGCGCGCCCGAATATGCTTGCGACAGCTTTAACCTAACCACTT
CGGTGGAAAGCGGATTTCTGTTCGATACGGTGTCACGGATACCAGGGAAG
ACGGGGCCGAGCTTTGTTTGA
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