EsuBft597_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft597_2a-0001
Unique NameEsuBft597_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_38contigScaffold_38:203872..204956 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft597_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length50
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft597_2aEsuBft597_2aEctocarpus subulatus male Bft15bgeneScaffold_38 203872..204956 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft597_2a-0001-exonagat-exon-44230Ectocarpus subulatus male Bft15bexonScaffold_38 203872..204260 -
EsuBft597_2a-0001-exonEsuBft597_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_38 204839..204956 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft597_2a-0001-cdsEsuBft597_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_38 203872..204260 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft597_2a-0001EsuBft597_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_38 203872..204956 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft597_2a-0001 ID=EsuBft597_2a-0001|Name=EsuBft597_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=507bp|location=Sequence derived from alignment at Scaffold_38:203872..204956- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCATCGTTTTCAGTGAAATTACTCCCCCGCCTGTTGTATCGGTTGC
AGGCGAGAACGCCATAAAGAAGAGAAAGGAAGACATGGCTACGTTTATGG
ATGATAGCTCCCGCGGAGGCGCGGCCGGAACGCTCTACGGCCGCGAAAAG
GGGGACGACGGCAGATCCCTCTCATCGGAACACGGGGCTTCTATGCGCCC
CACCGACACCTCGGCGCAGTGGGTGGACCACGCTTTCGAGGAACCCCTTC
AGGCAGAGGCATCGACGTGCTCCAACTGTGAAGAGGCCAGAGAGCTTTCG
TTGTTCTTCTACGGTGGGGGGACGCGCAGAGTGATGGTACTGGACCACAT
GGTTGGCAAACACAGATGCAACAAGCACGCCAACAAACCCCGTGGCGTGT
TCAAGCCTAGTGACGAGAAGGTGAAAACAATCACCGATGATGGCCTCCTC
AAGGCAGTCAGGAGGGAGGCGAAGGGGGTGGCCAAAAAGGCGTCGGGGGG
AAATTAG
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protein sequence of EsuBft597_2a-0001

>EsuBft597_2 ID=EsuBft597_2|Name=EsuBft597_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=168bp
MLIVFSEITPPPVVSVAGENAIKKRKEDMATFMDDSSRGGAAGTLYGREK
GDDGRSLSSEHGASMRPTDTSAQWVDHAFEEPLQAEASTCSNCEEARELS
LFFYGGGTRRVMVLDHMVGKHRCNKHANKPRGVFKPSDEKVKTITDDGLL
KAVRREAKGVAKKASGGN
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mRNA from alignment at Scaffold_38:203872..204956-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft597_2a-0001 ID=EsuBft597_2a-0001|Name=EsuBft597_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1085bp|location=Sequence derived from alignment at Scaffold_38:203872..204956- (Ectocarpus subulatus male Bft15b)
ATGCTCATCGTTTTCAGTGAAATTACTCCCCCGCCTGTTGTATCGGTTGC
AGGCGAGAACGCCATAAAGAAGAGAAAGGAAGACATGGCTACGTTTATGG
ATGATAGCTCCCGCGGAGGTGAGTTTCTCTTCGCGTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTATTGCTCGCGGAGTAAATTATAATGCCGCCAAAG
CGTGCTATTTGACTTTTGGAATGAAAATTTGACAGTCGATCGAACAGAAC
GCGATGCCTTAAGAGCGAGCAACTGGTGCATGGTTGAATTGAGCCTATTC
CCCCCGCCCGTCGAATATGAATCCTGCCAATGCGTGTAACTGCCTCTGGA
TCGAAGCTAAATTGTGATATTGGTACTTTAACAGTCGATCGAACGCGATA
CCTCAAGCGCGCAGCCGTTGCATGAGTTGAGTGAAATAACTCCCCCGCCT
GTTGTTGTTGTTGTTGGTAATGCTTGTCAATGCTCGTTAATGGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTCGTAATT
CATAGGAAATGGTGACGAACCGGTCTCATTCATTCAGAAATTCATAAACC
CTCCAGCTCACAACGACTGAATGGCTCGCAGTTTCCCACCTTTGCTCATC
TTTTTTTCCTTTGGTCTTGCACGGTTCGTCTACTATCTCCATGCAGGCGC
GGCCGGAACGCTCTACGGCCGCGAAAAGGGGGACGACGGCAGATCCCTCT
CATCGGAACACGGGGCTTCTATGCGCCCCACCGACACCTCGGCGCAGTGG
GTGGACCACGCTTTCGAGGAACCCCTTCAGGCAGAGGCATCGACGTGCTC
CAACTGTGAAGAGGCCAGAGAGCTTTCGTTGTTCTTCTACGGTGGGGGGA
CGCGCAGAGTGATGGTACTGGACCACATGGTTGGCAAACACAGATGCAAC
AAGCACGCCAACAAACCCCGTGGCGTGTTCAAGCCTAGTGACGAGAAGGT
GAAAACAATCACCGATGATGGCCTCCTCAAGGCAGTCAGGAGGGAGGCGA
AGGGGGTGGCCAAAAAGGCGTCGGGGGGAAATTAG
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Coding sequence (CDS) from alignment at Scaffold_38:203872..204956-

>EsuBft597_2a-0001 ID=EsuBft597_2a-0001|Name=EsuBft597_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=507bp|location=Sequence derived from alignment at Scaffold_38:203872..204956- (Ectocarpus subulatus male Bft15b)
ATGCTCATCGTTTTCAGTGAAATTACTCCCCCGCCTGTTGTATCGGTTGC
AGGCGAGAACGCCATAAAGAAGAGAAAGGAAGACATGGCTACGTTTATGG
ATGATAGCTCCCGCGGAGGCGCGGCCGGAACGCTCTACGGCCGCGAAAAG
GGGGACGACGGCAGATCCCTCTCATCGGAACACGGGGCTTCTATGCGCCC
CACCGACACCTCGGCGCAGTGGGTGGACCACGCTTTCGAGGAACCCCTTC
AGGCAGAGGCATCGACGTGCTCCAACTGTGAAGAGGCCAGAGAGCTTTCG
TTGTTCTTCTACGGTGGGGGGACGCGCAGAGTGATGGTACTGGACCACAT
GGTTGGCAAACACAGATGCAACAAGCACGCCAACAAACCCCGTGGCGTGT
TCAAGCCTAGTGACGAGAAGGTGAAAACAATCACCGATGATGGCCTCCTC
AAGGCAGTCAGGAGGGAGGCGAAGGGGGTGGCCAAAAAGGCGTCGGGGGG
AAATTAG
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