EsuBft586_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft586_7a-0001
Unique NameEsuBft586_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_370contigScaffold_370:797951..800570 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G4Q7
ProteomeIdEsuBft586_7
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl2759|Eukaryota
Length89
Hectar predicted targeting categoryother localisation
Evalue7.88e-63
EggNOG OGsCOG5022@1|root,KOG0160@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
Descriptionmotor activity
COG categoryZ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft586_7aEsuBft586_7aEctocarpus subulatus male Bft15bgeneScaffold_370 797951..800570 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft586_7a-0001EsuBft586_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_370 797951..800570 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft586_7a-0001-exonagat-exon-30842Ectocarpus subulatus male Bft15bexonScaffold_370 797951..798212 -
EsuBft586_7a-0001-exonagat-exon-30840Ectocarpus subulatus male Bft15bexonScaffold_370 798560..798910 -
EsuBft586_7a-0001-exonagat-exon-30843Ectocarpus subulatus male Bft15bexonScaffold_370 799341..799462 -
EsuBft586_7a-0001-exonEsuBft586_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_370 799853..800005 -
EsuBft586_7a-0001-exonagat-exon-30841Ectocarpus subulatus male Bft15bexonScaffold_370 800565..800570 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft586_7a-0001-cdsEsuBft586_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_370 797951..798212 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft586_7a-0001 ID=EsuBft586_7a-0001|Name=EsuBft586_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=894bp|location=Sequence derived from alignment at Scaffold_370:797951..800570- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGCGGCCCAGGAGAAGGTGGAGAGTGCCATGGCGAACGCGAGTGA
CGCGACGTCAATGGTGCTTGGCGTACAGGCGGCCGTGAGCGAGGAAGACC
TGGTCCCGCTGGTGAAGGCGGCCGAGTTTGTCCGTGTGGCCGGCGGCTGG
TCCAGGATGGTGCAAAAACTCCTGGCTGCTGTGGACGAAGACCAGATCGG
TACACACGCCGTGGGGGCCAAGGATCGCGTAGTCGCCGCTGTTGAGACAA
CGCTCGCGGATATCAACGACTCCGCCACCAAAGCCTCCGTGCTGGAGGCG
TATATCAAGAACGCCAAGGGCGGTGACGAAGCGGCGGCGCTACGCCGCCT
AGAAGATAACCTGAACAGCCTCAAGGCGGACTTCGACGAGGTCAAGGAGC
TGGCCCCGGGCGCCCAGAAAGCGGCAGACCTTTGCCAGGTGGAAAAGACG
CAGATGATGACGGCCGCCGCCACGGTCAAGGTTATCGTCTTCGAGGGGGA
GGCACGACCCGTGGTGAACGGGGCCGAGAGCGCCGCGCAGGCTTTCCGTC
ACCAGAATAATGCGTTCGAGAAGGCCAAGGCTTCGGCGGGGGGCGTCATG
GCCGCCGGGGAGAAGGCGGCGATCTCGCTCAGAGTTCCAGTCTTGGTGGC
GGAGGCGAGCCGAGAAGAGGTTCGGGAAGCCGAAAAGGCGCACGCAGAGA
AGGAGAAGCAGGCCAAGCAGAAAGCGACGGCGCAGGCGGAGGCGGTGGTG
GCAGCGAAAGCGAAAGCGGCTGCCACCGCGACGGTGGCAGAGAAGGACAA
GGAAAAGGACAAGGAGGTCGCTGCCGTTGTCGCGACTGCCGCCAGCGCTG
CCACGAAGCGGGTTGCCGCGGTACACACGGATCGGCTGGGATAG
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protein sequence of EsuBft586_7a-0001

>EsuBft586_7 ID=EsuBft586_7|Name=EsuBft586_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=297bp
MQAAQEKVESAMANASDATSMVLGVQAAVSEEDLVPLVKAAEFVRVAGGW
SRMVQKLLAAVDEDQIGTHAVGAKDRVVAAVETTLADINDSATKASVLEA
YIKNAKGGDEAAALRRLEDNLNSLKADFDEVKELAPGAQKAADLCQVEKT
QMMTAAATVKVIVFEGEARPVVNGAESAAQAFRHQNNAFEKAKASAGGVM
AAGEKAAISLRVPVLVAEASREEVREAEKAHAEKEKQAKQKATAQAEAVV
AAKAKAAATATVAEKDKEKDKEVAAVVATAASAATKRVAAVHTDRLG
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mRNA from alignment at Scaffold_370:797951..800570-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft586_7a-0001 ID=EsuBft586_7a-0001|Name=EsuBft586_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2620bp|location=Sequence derived from alignment at Scaffold_370:797951..800570- (Ectocarpus subulatus male Bft15b)
ATGCAGGTGAGTGTGAGTCTCTCTGCCGCTCTCGCTTCTGTTCGTTCATT
TGCAGTGACCGTGCACCGTAAAACCCTGTCTTCCTCATCCTCTCCCGTGC
TGGTGGTGCGGCGACTGCCATCGATGACTCATTCAATACTCTCATTCCCT
GCTTGTGGAAGAGTCACACGGTTTTGTTTATCCCTCGTGCCCATACAGCA
GCAGTAGAACCGCCCTTTTATTTACTACTTTGTGAGCACCGTGGTCGTCC
ATTGAGGATGGCAATGTCCGGGCGTATCAAGATCCATTTTTTTGTTTGTC
TGCGTTTTTTCCTGTGTTTTTCAGCGGAACCTGAGTCGCACGACACCCGC
ATTTGGATTTCCAGCAACGCCTTGGCGTTACTCTCGAAATCAACGAGAAC
GAAGAACCCAGCTGCAACCCCAGCCCCCCCATAGCCGACCCGCAACAACA
GCAGCTTCCCCCCTGCCCCTCGAAAGAAGCACAGGACATCCATCCTCCCG
GCGCCATTCCGACTCAATCGATCCATCGAAACCACCTACCGTTGAACCTA
CCTACACAACCACAGGCGGCCCAGGAGAAGGTGGAGAGTGCCATGGCGAA
CGCGAGTGACGCGACGTCAATGGTGCTTGGCGTACAGGCGGCCGTGAGCG
AGGAAGACCTGGTCCCGCTGGTGAAGGCGGCCGAGTTTGTCCGTGTGGCC
GGCGGCTGGTCCAGGATGGTGCGATCTAGATAAGCTTTTATTGGCATGCT
CGTACCGCGGTGGAGATATACGCATGCGAGAGCCGGTGTGCCAGCCTCTT
GGTGGAGAGTATTCTACTTGTGGCATGGTGCGGAGCGCTTCTTGTGGTCA
TCGGTGTACGCAGGATAGGATAGGACGCACCAAACCTTTGCGGTGGGGCT
GTACCCTAAAGGAACCAAAAAAGGATGGCATACCCAGGGGGGGGGACAGT
GGCGCACATCTCTCTGCTGAGACCGCCGCCGCCTCTATCTGGACCTGCCG
CCCGCATGCATCCGAGATACCATCTTCCTCTTTTTACGCCTGGTCCCACA
CATGCCTCTGCTGGTCGAATGTACGCTGCTGCATGATACGCTACGCACGA
TGCCCTAGGTGCAAAAACTCCTGGCTGCTGTGGACGAAGACCAGATCGGT
ACACACGCCGTGGGGGCCAAGGATCGCGTAGTCGCCGCTGTTGAGACAAC
GCTCGCGGATATCAACGACTCCGCCACCAAGTGAGCAAGCAAAGCAAGCA
TTACACAAGCAAGCCGCGCACAAACCTGAAGGTCCCTGTAGTCGGCCCTT
TTGATTCGATTCGATGCAAACTCCTGACTACTCCACGTACGAACCAATAA
CCACTTACTATTGCACAGAAGGCTTTATCTTTCAGTCTCCCTTTATCTCT
CCGCATGTTCTTTGTGGTGCCAGCTTCTATTCCGCGGTCACGAATCTTCG
CTGCCGCAACAACTTGGGCGCAAGTATTCTCTTGAATCCGATTGCCGCCA
TCAGAACCCTGTCGTGAACCGAGTCGTGCGAGATGTCATTTTTCTCTTTT
TGCCAACCCAGTCCTATCCATCCTTTCGCCTTGACCTTCACCTTCATGGC
ACGTTGTTCACACCCCGCCCTTGCGACCGATGCGTGCCTCTGCGTTCGTG
TGTAACTCAGAGCCTCCGTGCTGGAGGCGTATATCAAGAACGCCAAGGGC
GGTGACGAAGCGGCGGCGCTACGCCGCCTAGAAGATAACCTGAACAGCCT
CAAGGCGGACTTCGACGAGGTCAAGGAGCTGGCCCCGGGCGCCCAGAAAG
CGGCAGACCTTTGCCAGGTGGAAAAGACGCAGATGATGACGGCCGCCGCC
ACGGTCAAGGTTATCGTCTTCGAGGGGGAGGCACGACCCGTGGTGAACGG
GGCCGAGAGCGCCGCGCAGGCTTTCCGTCACCAGAATAATGCGTTCGAGA
AGGCCAAGGCTTCGGCGGGGGGCGTCATGGCCGCCGGGGAGAAGGCGGCG
ATCTCGCTCAGGTTGGATTGACTGTCGTTTGCGGTTGTGTTTTGCATTTT
CTTCTGTTTGGTGTAGTCCGGTGGTCTCTTGACGCGGGCGCTGAAGCAAC
CTGAGCTCGTCGCCATCACCGGCGTCAACGTTGGCTGTTGGCGCTGTGGT
GGACGTTGGACGTTCGCTGTTGTGGCCCACTATCTCTCGGGCGCCAGGAG
GTCAATGCGGTTCATGTATTGCCGGGGTCTTCCAAGAACGTGTGTGGACT
TCGATGTTCTTTGTGTACGGCAAAAGTCGGGACGTCTGGTTCTGGCGAAT
GTCTACGCGTTTGTGCCGTCTGCGGGAAAACGTGGTTATATAATTGGTTG
CTGCAGAGAGTTCCAGTCTTGGTGGCGGAGGCGAGCCGAGAAGAGGTTCG
GGAAGCCGAAAAGGCGCACGCAGAGAAGGAGAAGCAGGCCAAGCAGAAAG
CGACGGCGCAGGCGGAGGCGGTGGTGGCAGCGAAAGCGAAAGCGGCTGCC
ACCGCGACGGTGGCAGAGAAGGACAAGGAAAAGGACAAGGAGGTCGCTGC
CGTTGTCGCGACTGCCGCCAGCGCTGCCACGAAGCGGGTTGCCGCGGTAC
ACACGGATCGGCTGGGATAG
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Coding sequence (CDS) from alignment at Scaffold_370:797951..800570-

>EsuBft586_7a-0001 ID=EsuBft586_7a-0001|Name=EsuBft586_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=894bp|location=Sequence derived from alignment at Scaffold_370:797951..800570- (Ectocarpus subulatus male Bft15b)
ATGCAGGCGGCCCAGGAGAAGGTGGAGAGTGCCATGGCGAACGCGAGTGA
CGCGACGTCAATGGTGCTTGGCGTACAGGCGGCCGTGAGCGAGGAAGACC
TGGTCCCGCTGGTGAAGGCGGCCGAGTTTGTCCGTGTGGCCGGCGGCTGG
TCCAGGATGGTGCAAAAACTCCTGGCTGCTGTGGACGAAGACCAGATCGG
TACACACGCCGTGGGGGCCAAGGATCGCGTAGTCGCCGCTGTTGAGACAA
CGCTCGCGGATATCAACGACTCCGCCACCAAAGCCTCCGTGCTGGAGGCG
TATATCAAGAACGCCAAGGGCGGTGACGAAGCGGCGGCGCTACGCCGCCT
AGAAGATAACCTGAACAGCCTCAAGGCGGACTTCGACGAGGTCAAGGAGC
TGGCCCCGGGCGCCCAGAAAGCGGCAGACCTTTGCCAGGTGGAAAAGACG
CAGATGATGACGGCCGCCGCCACGGTCAAGGTTATCGTCTTCGAGGGGGA
GGCACGACCCGTGGTGAACGGGGCCGAGAGCGCCGCGCAGGCTTTCCGTC
ACCAGAATAATGCGTTCGAGAAGGCCAAGGCTTCGGCGGGGGGCGTCATG
GCCGCCGGGGAGAAGGCGGCGATCTCGCTCAGAGTTCCAGTCTTGGTGGC
GGAGGCGAGCCGAGAAGAGGTTCGGGAAGCCGAAAAGGCGCACGCAGAGA
AGGAGAAGCAGGCCAAGCAGAAAGCGACGGCGCAGGCGGAGGCGGTGGTG
GCAGCGAAAGCGAAAGCGGCTGCCACCGCGACGGTGGCAGAGAAGGACAA
GGAAAAGGACAAGGAGGTCGCTGCCGTTGTCGCGACTGCCGCCAGCGCTG
CCACGAAGCGGGTTGCCGCGGTACACACGGATCGGCTGGGATAG
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