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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 7029.ACYPI066108-PA |
| ProteomeId | EsuBft586_11 |
| Protein domains | IPR001584 |
| Protein domains | PTHR11439 |
| Protein domains | IPR012337 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation] |
| Nb exon | 5 |
| Max annot lvl | 7029.ACYPI066108-PA|- |
| Length | 2382 |
| Hectar predicted targeting category | other localisation |
| Evalue | 2.28e-24 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,396RY@33154|Opisthokonta,3C358@33208|Metazoa,3DI66@33213|Bilateria |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Description | transposition, RNA-mediated |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
| GO | 0003676 |
| GO | 0003824 |
| GO | 0015074 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft586_11a-0001 ID=EsuBft586_11a-0001|Name=EsuBft586_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2382bp|location=Sequence derived from alignment at Scaffold_370:817029..820658- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGATCTTGGAGATACGAGTGTGCTCACCGACGAGCAGCTCATGGATGG CTATGATGACACCCCGTATCAAGATTTTTTCCCCGTGTTTGTCCCAGAGA GTGACGCTGCGAATGTGGCTGGTGTTTTGGATAGCATTGATGGGGGTGCT GATTTTGACTTGAGTGCGGCTGCGCTTGGCCCTGGTGCGTCCCCGTTTGC TCTTGGTTCGACTGAAAAGTCCGTTGACATCAACCGCTTCCACCGCTCCC TTGCCCACGCTTGCGAGCCGCTTTTGAGGGAAACTGCCCAGCAGAGAGGC ACGGTGCTCACGGGCAAGCTGGAAGCTTGCACGGACCGCATAAGGGCGAA GGGCAGGCGAGGGTCGGTGCCGCGGGGGCCGGGAGCGCGAGCGTCTATGC CCCTCGGCGTCGACTTCCGGCGCTTCTGCGACGACAACGGCATCGGCGTC GAGTTCACCCCGCCTGGCGTTCCGCAGGACAACGGCGTCGTCGAGAGGAC CATCTGGCGCATCATGAAGGCCGGCATGGCCGCCCGCCGCAGCGCTGGCC GTGTGTTCAACGTCGACTTCGCCTCCATCCCCGGCCTCGACGAGCGCGGT GACCGTCTTTGGATGGAATCGGCGAAGTGGGCCGCCGACGCTCTCAACCA GTCGGCGACCAAGGCCAACCCCGGGCGGCGCTCGCCGCACGAGATGTTCA CCGGCGAGCAGGGGCCTTTCCGCGTGCTGCCGCCACTCTCTTTCCTCTAC CTGAACGGCGGCGACAACCACCCGAGCGGCACCGTCAAGGTCCTCAAGGC GTCCACCGGCCGCGTCGTCTACACCACCAACGTGTCGTGGGTGACGTCGG CGCCAGCCGGCGAGGGGGGGTTCCGCTGGTATCAGCGCTGCGCCGATACC CCCCCCATTCACGCCGCCGGTCGTCTCGGTCAACTTTGGTCCAGCACCGA CGCCTTCGACCGCCGCACCGCCGCCGCCAGCGCCCACGCCGTCGCCCGCT CCCGCTCCCGCTGCCGCTTCGCCCCCTGCAGTAACGCCGCCGCCAGCGAC CACGCGGCCGCCCGCTCCCACGCCTTCACAGCCGCCCTCTGCCACTTCGC CGTCACCGTCGGTGACCCCCGCTCCTGGCCAGCCGTCCGCTGTCGCTTCG CCTTCACCATCGGCAACCCCCGATCTAGACCAGCCGCCGTCGCCGCCGGA CCCCGCGATGCCCCCGCTCACGGCTCACGCCATGCGGCAGCTTCGCCCGG GTACAAAGGCCGAGGCACAGGACACATCTCGATGCTAGACAAGAACACTC TGGTGTCGATGCTGGAGGCTCGGAGCGGGGTGGATGAGGAGCGTAGGGAT CTGGGGGGGGCGGAGGCCGGAGAGCCAGGGGGAGCGGGGGCCGGAGAGCA GGCGGGAGCACTCGCAGCGGTGGACCCGGGGACTGGAGGAGCGGGCTTTC CACTCGCATTGGCCACGCTTCTCGCCAGCCGGGAAGACATCGAGGCCACG CTGCGAGACCAGCGCCCGCCGGAGCAACGCCCTGACCTTCCGCACTGCCA GGCCAGCGACCTTCGTGTTCCGAAGAGCTACAAAGAGGCCATGGCGTCGG AGTTGACGATGCCTCAGCAGACGTTCACGGATGAGCTAGCAGCAGAGTAT GGAGTAGTGGGAGGTAAGAGCGTTCCGATGTCTTCGGGGGTGAAGCTTTC CGATTTTGATGCGGATGAGGTGGCGACAGACTTTCCGTTTCGTGAACTAG TCGGATCTTTGATGTGGCTGGCGACTCAGACTAGACCAGACATTGCGAAT GCAGTAAGGGCAGTATCTAGGTATTGCTCATCTCCGAAGCAGGTCCACTG GGATGCAGCGATAAGTATTTTAGGGTATGCGAGGAGGACGAGTCACTTCG GTATTTTATTGCAGAGAGGTACGGTAGAGGGTTTCAGTTTGCAGGGGTAC CCTGATGCGGACTTTGTAAGCAAGGCAGCAGACCATAGGCCGGTATCAGG GGGGATCGTCACGTGCGGAGGAGGCGCCGTGTCTTGGTTTTCCAGAACGC AGAAGTGTGTTACGCTTTCGACGACAGAAGCAGAGTATGTGGCGCTTGGT GGCGTAATGAAGGAGATTGGTTTTGAGGCAGATTTGGCGTTTCATGTTGC CGCAGGTCGGCATGCCGTGCATCCCAGTCTTCGAGGACAACCAGGGGGCG ATTCAACTAGCGCAGAACCCCATCTCAAACTCGAACTCGAAGCACATAGA TGCAAGGCACCATTTTCTCAGGAAACTGGTAGAGAGGAAGGAAATTTCGG TGATCCACGTGCCGTCGCCATACCAGCGTGCAGATTTTCTTACGAAGAGC TTGCCGAAGGGCACTTTACCGTGATTTTGTGA back to topprotein sequence of EsuBft586_11a-0001 >EsuBft586_11 ID=EsuBft586_11|Name=EsuBft586_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=793bp
MDLGDTSVLTDEQLMDGYDDTPYQDFFPVFVPESDAANVAGVLDSIDGGA DFDLSAAALGPGASPFALGSTEKSVDINRFHRSLAHACEPLLRETAQQRG TVLTGKLEACTDRIRAKGRRGSVPRGPGARASMPLGVDFRRFCDDNGIGV EFTPPGVPQDNGVVERTIWRIMKAGMAARRSAGRVFNVDFASIPGLDERG DRLWMESAKWAADALNQSATKANPGRRSPHEMFTGEQGPFRVLPPLSFLY LNGGDNHPSGTVKVLKASTGRVVYTTNVSWVTSAPAGEGGFRWYQRCADT PPIHAAGRLGQLWSSTDAFDRRTAAASAHAVARSRSRCRFAPCSNAAASD HAAARSHAFTAALCHFAVTVGDPRSWPAVRCRFAFTIGNPRSRPAAVAAG PRDAPAHGSRHAAASPGYKGRGTGHISMLDKNTLVSMLEARSGVDEERRD LGGAEAGEPGGAGAGEQAGALAAVDPGTGGAGFPLALATLLASREDIEAT LRDQRPPEQRPDLPHCQASDLRVPKSYKEAMASELTMPQQTFTDELAAEY GVVGGKSVPMSSGVKLSDFDADEVATDFPFRELVGSLMWLATQTRPDIAN AVRAVSRYCSSPKQVHWDAAISILGYARRTSHFGILLQRGTVEGFSLQGY PDADFVSKAADHRPVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALG GVMKEIGFEADLAFHVAAGRHAVHPSLRGQPGGDSTSAEPHLKLELEAHR CKAPFSQETGREEGNFGDPRAVAIPACRFSYEELAEGHFTVIL back to topmRNA from alignment at Scaffold_370:817029..820658- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft586_11a-0001 ID=EsuBft586_11a-0001|Name=EsuBft586_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3630bp|location=Sequence derived from alignment at Scaffold_370:817029..820658- (Ectocarpus subulatus male Bft15b) ATGGATCTTGGAGATACGAGTGTGCTCACCGACGAGCAGCTCATGGATGG
CTATGATGACACCCCGTATCAAGATTTTTTCCCCGTGTTTGTCCCAGAGA
GTGACGCTGCGAATGTGGCTGGTGTTTTGGATAGCATTGATGGGGGTGCT
GATTTTGACTTGAGTGCGGCTGCGCTTGGCCCTGGTGCGTCCCCGTTTGC
TCTTGGTTCGACTGAAAAGTCCGTTGACATCAACCGCTTCCACCGCTCCC
TTGCCCACGCTTGCGAGCCGCTTTTGAGGGAAACTGCCCAGCAGAGAGGC
ACGGTGCTCACGGGCAAGCTGGAAGCTTGCACGGACCGCATAAGGGCGAA
GGGCAGGCGAGGGTCGGTGCCGCGGGGGCCGGGAGCGCGAGCGTCTATGC
CCCTCGGCGTGTTCACCTGGACCTGTGTGGATCGCTGGTGCCTTCCCTGG
GCGGCAACCTCTACCTGTTCGTCGCCGTGGACAGCGCCTCGCGGTGGAAC
AAGGCCCACGGTCTCCGGCGGAAGTCCGACACGCTGGCGGCAACGAAAAG
GCTGCTGGCGCACGTGGGGCGACGACCTCGGGCGCCTCGGGTGGTTCCGC
GTCGACAACGGCACCGAGTGAACCCGCAGCGACTTCCGGCGCTTCTGCGA
CGACAACGGCATCGGCGTCGAGTTCACCCCGCCTGGCGTTCCGCAGGACA
ACGGCGTCGTCGAGAGGACCATCTGGCGCATCATGAAGGCCGGCATGGCC
GCCCGCCGCAGCGCTGGCCGTGTGTTCAACGTCGACTTCGCCTCCATCCC
CGGCCTCGACGAGCGCGGTGACCGTCTTTGGATGGAATCGGCGAAGTGGG
CCGCCGACGCTCTCAACCAGTCGGCGACCAAGGCCAACCCCGGGCGGCGC
TCGCCGCACGAGATGTTCACCGGCGAGCAGGGGCCTTTCCGCGTGCTGCC
GTTCTTCCAGCCCGGCTTCATGCGTGAGGATCGCCGCACCAAGCTCGACG
ACCAGGCCACTCTCTTTCCTCTACCTGAACGGCGGCGACAACCACCCGAG
CGGCACCGTCAAGGTCCTCAAGGCGTCCACCGGCCGCGTCGTCTACACCA
CCAACGTGTCGTGGGTGACGTCGGCGCCAGCCGGCGAGGGGGGGTTCCGC
TGGTATCAGCGCTGCGCCGATACCCCCCCCATTCACGCCGCCGGTCGTCT
CGGTCAACTTTGGTCCAGCACCGACGCCTTCGACCGCCGCACCGCCGCCG
CCAGCGCCCACGCCGTCGCCCGCTCCCGCTCCCGCTGCCGCTTCGCCCCC
TGCAGTAACGCCGCCGCCAGCGACCACGCGGCCGCCCGCTCCCACGCCTT
CACAGCCGCCCTCTGCCACTTCGCCGTCACCGTCGGTGACCCCCGCTCCT
GGCCAGCCGTCCGCTGTCGCTTCGCCTTCACCATCGGCAACCCCCGATCT
AGACCAGCCGCCGTCGCCGCCGGACCCCGCGATGCCCCCGCTCACGGCTC
ACGCCATGCGGCAGCTTCGCCCGGGTACAAAGGCCGAGGGTATGACAGAC
CCGCGGCTGTCAAGCCGTACGAGATCGGGCACAAGGCACAGCACAGGACA
CATCTCGATGCTAGACAAGAACACTCTGGTGTCGATGCTGGAGGCTCGGA
GCGGGGTGGATGAGGAGCGTAGGGATCTGGGGGGGGCGGAGGCCGGAGAG
CCAGGGGGAGCGGGGGCCGGAGAGCAGGCGGGAGCACTCGCAGCGGTGGA
CCCGGGGACTGGAGGAGCGGGCTTTCCACTCGCATTGGCCACGCTTCTCG
CCAGCCGGGAAGACATCGAGGCCACGCTGCGAGACCAGCGCCCGCCGGAG
CAACGCCCTGACCTTCCGCACTGCCAGGCCAGCGACCTTCGTGTTCCGAA
GAGCTACAAAGAGGCCATGGCGTCGGAGTACTAGCACCTTTGGAGCGACT
CTATGCAAAGGGATTTTTATGGCTTGTTGGAAGCGGGGACTTTTACTCCG
GCGAAGTAGCAATTAGTGGAGAACGCAATTAAGCTAAGTGGGTATTCGAT
TGGAAGGCAAATGAGTTTGGATGGCCCACACAGGTTAAGTCAAGACTTGT
AGCGAGAGGTGAAATGCAGAGAGAGTACATTGACTTTGGGGAGTTGTACG
CGCCTACCGTCTCTGTTTCTTGTGTTAGGATGTTGGCTGCTTTGGCGTGC
GAGATGAAGGATGTCATTTCGATATTGAGTAAGCTTTAGTGCGTTGGAGT
TGGAGACAGACGTGTACATGCGTTTGCCGCAGGGATGTGGAGCTCTGTCT
GCAATGATTGTAAAACTAGGCAAGAGTCTGTATGGCTTGAGACAGGCATC
TAGGCAGTGGCATGCAATGCTGAAGAGGTGTTTGGTGGCGTTAGGTGTTG
AGCAGTGCATGGCCGATGCTTGTGTGTTTCGTTTGATTGAGGATGGATGT
GTTGTTTTAATTTTGGTAGTACATGTCGATGACATTTTTGCTGTGGGAGA
GAGGGAGAGATGTGACAAGTTTGGCGCCGACCATAACAAGTGCGTGCCAG
TGAAGAACCTGAGAGAGTTGAGATGGTATTCTGGGTGCTTTTACGAGAGG
AACAAGGAGACCGGTAGGTTGACGATGCCTCAGCAGACGNATGGCCGATG
CTTGTGTGTTTCGTTTGATTGAGGATGGATGTGTTGTTTTAATTTTGGTA
GTACATGTCGATGACATTTTTGCTGTGGGAGAGAGGGAGAGATGTGACAA
GTTTGGCGCCGACCATAACAAGTGCGTGCCAGTGAAGAACCTGAGAGAGT
TGAGATGGTATTCTGGGTGCTTTTACGAGAGGAACAAGGAGACCGGTAGG
TTGACGATGCCTCAGCAGACGTTCACGGATGAGCTAGCAGCAGAGTATGG
AGTAGTGGGAGGTAAGAGCGTTCCGATGTCTTCGGGGGTGAAGCTTTCCG
ATTTTGATGCGGATGAGGTGGCGACAGACTTTCCGTTTCGTGAACTAGTC
GGATCTTTGATGTGGCTGGCGACTCAGACTAGACCAGACATTGCGAATGC
AGTAAGGGCAGTATCTAGGTATTGCTCATCTCCGAAGCAGGTCCACTGGG
ATGCAGCGATAAGTATTTTAGGGTATGCGAGGAGGACGAGTCACTTCGGT
ATTTTATTGCAGAGAGGTACGGTAGAGGGTTTCAGTTTGCAGGGGTACCC
TGATGCGGACTTTGTAAGCAAGGCAGCAGACCATAGGCCGGTATCAGGGG
GGATCGTCACGTGCGGAGGAGGCGCCGTGTCTTGGTTTTCCAGAACGCAG
AAGTGTGTTACGCTTTCGACGACAGAAGCAGAGTATGTGGCGCTTGGTGG
CGTAATGAAGGAGATTGGTTTTGAGGCAGATTTGGCGTTTCATGTTGCCG
CAGGTCGGCATGCCGTGCATCCCAGTCTTCGAGGACAACCAGGGGGCGAT
TCAACTAGCGCAGAACCCCATCTCAAACTCGAACTCGAAGCACATAGATG
CAAGGCACCATTTTCTCAGGAAACTGGTAGAGAGGAAGGAAATTTCGGTG
ATCCACGTGCCGTCGCCATACCAGCGTGCAGATTTTCTTACGAAGAGCTT
GCCGAAGGGCACTTTACCGTGATTTTGTGA back to topCoding sequence (CDS) from alignment at Scaffold_370:817029..820658- >EsuBft586_11a-0001 ID=EsuBft586_11a-0001|Name=EsuBft586_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2382bp|location=Sequence derived from alignment at Scaffold_370:817029..820658- (Ectocarpus subulatus male Bft15b) ATGGATCTTGGAGATACGAGTGTGCTCACCGACGAGCAGCTCATGGATGG CTATGATGACACCCCGTATCAAGATTTTTTCCCCGTGTTTGTCCCAGAGA GTGACGCTGCGAATGTGGCTGGTGTTTTGGATAGCATTGATGGGGGTGCT GATTTTGACTTGAGTGCGGCTGCGCTTGGCCCTGGTGCGTCCCCGTTTGC TCTTGGTTCGACTGAAAAGTCCGTTGACATCAACCGCTTCCACCGCTCCC TTGCCCACGCTTGCGAGCCGCTTTTGAGGGAAACTGCCCAGCAGAGAGGC ACGGTGCTCACGGGCAAGCTGGAAGCTTGCACGGACCGCATAAGGGCGAA GGGCAGGCGAGGGTCGGTGCCGCGGGGGCCGGGAGCGCGAGCGTCTATGC CCCTCGGCGTCGACTTCCGGCGCTTCTGCGACGACAACGGCATCGGCGTC GAGTTCACCCCGCCTGGCGTTCCGCAGGACAACGGCGTCGTCGAGAGGAC CATCTGGCGCATCATGAAGGCCGGCATGGCCGCCCGCCGCAGCGCTGGCC GTGTGTTCAACGTCGACTTCGCCTCCATCCCCGGCCTCGACGAGCGCGGT GACCGTCTTTGGATGGAATCGGCGAAGTGGGCCGCCGACGCTCTCAACCA GTCGGCGACCAAGGCCAACCCCGGGCGGCGCTCGCCGCACGAGATGTTCA CCGGCGAGCAGGGGCCTTTCCGCGTGCTGCCGCCACTCTCTTTCCTCTAC CTGAACGGCGGCGACAACCACCCGAGCGGCACCGTCAAGGTCCTCAAGGC GTCCACCGGCCGCGTCGTCTACACCACCAACGTGTCGTGGGTGACGTCGG CGCCAGCCGGCGAGGGGGGGTTCCGCTGGTATCAGCGCTGCGCCGATACC CCCCCCATTCACGCCGCCGGTCGTCTCGGTCAACTTTGGTCCAGCACCGA CGCCTTCGACCGCCGCACCGCCGCCGCCAGCGCCCACGCCGTCGCCCGCT CCCGCTCCCGCTGCCGCTTCGCCCCCTGCAGTAACGCCGCCGCCAGCGAC CACGCGGCCGCCCGCTCCCACGCCTTCACAGCCGCCCTCTGCCACTTCGC CGTCACCGTCGGTGACCCCCGCTCCTGGCCAGCCGTCCGCTGTCGCTTCG CCTTCACCATCGGCAACCCCCGATCTAGACCAGCCGCCGTCGCCGCCGGA CCCCGCGATGCCCCCGCTCACGGCTCACGCCATGCGGCAGCTTCGCCCGG GTACAAAGGCCGAGGCACAGGACACATCTCGATGCTAGACAAGAACACTC TGGTGTCGATGCTGGAGGCTCGGAGCGGGGTGGATGAGGAGCGTAGGGAT CTGGGGGGGGCGGAGGCCGGAGAGCCAGGGGGAGCGGGGGCCGGAGAGCA GGCGGGAGCACTCGCAGCGGTGGACCCGGGGACTGGAGGAGCGGGCTTTC CACTCGCATTGGCCACGCTTCTCGCCAGCCGGGAAGACATCGAGGCCACG CTGCGAGACCAGCGCCCGCCGGAGCAACGCCCTGACCTTCCGCACTGCCA GGCCAGCGACCTTCGTGTTCCGAAGAGCTACAAAGAGGCCATGGCGTCGG AGTTGACGATGCCTCAGCAGACGTTCACGGATGAGCTAGCAGCAGAGTAT GGAGTAGTGGGAGGTAAGAGCGTTCCGATGTCTTCGGGGGTGAAGCTTTC CGATTTTGATGCGGATGAGGTGGCGACAGACTTTCCGTTTCGTGAACTAG TCGGATCTTTGATGTGGCTGGCGACTCAGACTAGACCAGACATTGCGAAT GCAGTAAGGGCAGTATCTAGGTATTGCTCATCTCCGAAGCAGGTCCACTG GGATGCAGCGATAAGTATTTTAGGGTATGCGAGGAGGACGAGTCACTTCG GTATTTTATTGCAGAGAGGTACGGTAGAGGGTTTCAGTTTGCAGGGGTAC CCTGATGCGGACTTTGTAAGCAAGGCAGCAGACCATAGGCCGGTATCAGG GGGGATCGTCACGTGCGGAGGAGGCGCCGTGTCTTGGTTTTCCAGAACGC AGAAGTGTGTTACGCTTTCGACGACAGAAGCAGAGTATGTGGCGCTTGGT GGCGTAATGAAGGAGATTGGTTTTGAGGCAGATTTGGCGTTTCATGTTGC CGCAGGTCGGCATGCCGTGCATCCCAGTCTTCGAGGACAACCAGGGGGCG ATTCAACTAGCGCAGAACCCCATCTCAAACTCGAACTCGAAGCACATAGA TGCAAGGCACCATTTTCTCAGGAAACTGGTAGAGAGGAAGGAAATTTCGG TGATCCACGTGCCGTCGCCATACCAGCGTGCAGATTTTCTTACGAAGAGC TTGCCGAAGGGCACTTTACCGTGATTTTGTGA back to top
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